RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 PLEKHO1Q53GL0 409 aaPredicted RBP17.35■□□□□ 0.37
HOXC11-202ENST00000546378 CREBRFQ8IUR6 639 aa17.35■□□□□ 0.37
HOXC11-202ENST00000546378 AKAP12Q02952 1782 aa17.35■□□□□ 0.37
HOXC11-202ENST00000546378 CLEC17AQ6ZS10 378 aa17.35■□□□□ 0.37
HOXC11-202ENST00000546378 DDX46Q7L014 1031 aaKnown RBP17.35■□□□□ 0.37
HOXC11-202ENST00000546378 CCDC112Q8NEF3 446 aa17.35■□□□□ 0.37
HOXC11-202ENST00000546378 KIF1BPQ96EK5 621 aa17.35■□□□□ 0.37
HOXC11-202ENST00000546378 ATP5J2-PTCD1G3V325 749 aa17.34■□□□□ 0.37
HOXC11-202ENST00000546378 PTCD1O75127 700 aaKnown RBP17.34■□□□□ 0.37
HOXC11-202ENST00000546378 CUL4AQ13619 759 aa17.34■□□□□ 0.37
HOXC11-202ENST00000546378 TOM1L2Q6ZVM7 507 aa17.34■□□□□ 0.37
HOXC11-202ENST00000546378 CBX8Q9HC52 389 aa17.34■□□□□ 0.37
HOXC11-202ENST00000546378 ARHGEF10O15013 1369 aa17.34■□□□□ 0.37
HOXC11-202ENST00000546378 LMTK3Q96Q04 1460 aa17.34■□□□□ 0.37
HOXC11-202ENST00000546378 SMC2O95347 1197 aa17.34■□□□□ 0.37
HOXC11-202ENST00000546378 MST1RQ04912 1400 aa17.34■□□□□ 0.37
HOXC11-202ENST00000546378 ANKRD26Q9UPS8 1709 aa17.34■□□□□ 0.37
HOXC11-202ENST00000546378 USP27XA6NNY8 438 aa17.34■□□□□ 0.37
HOXC11-202ENST00000546378 ME1P48163 572 aa17.34■□□□□ 0.37
HOXC11-202ENST00000546378 POLR3DP05423 398 aaPredicted RBP17.33■□□□□ 0.36
HOXC11-202ENST00000546378 SDF4Q9BRK5 362 aa17.33■□□□□ 0.36
HOXC11-202ENST00000546378 FMN2Q9NZ56 1722 aa17.33■□□□□ 0.36
HOXC11-202ENST00000546378 A0A0D9SFI3 127 aa17.32■□□□□ 0.36
HOXC11-202ENST00000546378 HAND2P61296 217 aa17.32■□□□□ 0.36
HOXC11-202ENST00000546378 SF3A1Q15459 793 aaKnown RBP17.32■□□□□ 0.36
HOXC11-202ENST00000546378 DNAAF4Q8WXU2 420 aa17.32■□□□□ 0.36
HOXC11-202ENST00000546378 KIAA0232Q92628 1395 aa17.32■□□□□ 0.36
HOXC11-202ENST00000546378 RPAP1Q9BWH6 1393 aaPredicted RBP17.32■□□□□ 0.36
HOXC11-202ENST00000546378 BTBD11A6QL63 1104 aa17.32■□□□□ 0.36
HOXC11-202ENST00000546378 RIC3Q7Z5B4 369 aa17.32■□□□□ 0.36
HOXC11-202ENST00000546378 HOMER1Q86YM7 354 aa17.32■□□□□ 0.36
HOXC11-202ENST00000546378 BRF1Q92994 677 aa17.32■□□□□ 0.36
HOXC11-202ENST00000546378 LSG1Q9H089 658 aaKnown RBP17.32■□□□□ 0.36
HOXC11-202ENST00000546378 HYPKQ9NX55 129 aa17.32■□□□□ 0.36
HOXC11-202ENST00000546378 PIK3C2AO00443 1686 aa17.32■□□□□ 0.36
HOXC11-202ENST00000546378 ATP2B1P20020 1258 aa17.32■□□□□ 0.36
HOXC11-202ENST00000546378 GOLGA8FQ08AF8 430 aa17.32■□□□□ 0.36
HOXC11-202ENST00000546378 GOLGA8DPQ0D2H9 430 aa17.32■□□□□ 0.36
HOXC11-202ENST00000546378 IBTKQ9P2D0 1353 aaPredicted RBP17.31■□□□□ 0.36
HOXC11-202ENST00000546378 MCM5P33992 734 aa17.31■□□□□ 0.36
HOXC11-202ENST00000546378 CREB3L3Q68CJ9 461 aa17.31■□□□□ 0.36
HOXC11-202ENST00000546378 RUFY2Q8WXA3 655 aa17.31■□□□□ 0.36
HOXC11-202ENST00000546378 RAD50Q92878 1312 aa17.31■□□□□ 0.36
HOXC11-202ENST00000546378 TOPAZ1Q8N9V7 1692 aa17.31■□□□□ 0.36
HOXC11-202ENST00000546378 BRPF1P55201 1214 aaPredicted RBP17.31■□□□□ 0.36
HOXC11-202ENST00000546378 GJB4Q9NTQ9 266 aa17.31■□□□□ 0.36
HOXC11-202ENST00000546378 NUTM2BA6NNL0 878 aaPredicted RBP17.31■□□□□ 0.36
HOXC11-202ENST00000546378 NUTM2EB1AL46 878 aaPredicted RBP17.31■□□□□ 0.36
HOXC11-202ENST00000546378 POLR3GO15318 223 aaPredicted RBP17.31■□□□□ 0.36
HOXC11-202ENST00000546378 NCBP3Q53F19 620 aaKnown RBP17.31■□□□□ 0.36
HOXC11-202ENST00000546378 ZNF589Q86UQ0 364 aaPredicted RBP17.31■□□□□ 0.36
HOXC11-202ENST00000546378 NUTM2AQ8IVF1 878 aaPredicted RBP17.31■□□□□ 0.36
HOXC11-202ENST00000546378 INTS4Q96HW7 963 aaKnown RBP17.31■□□□□ 0.36
HOXC11-202ENST00000546378 SNRKQ9NRH2 765 aa17.31■□□□□ 0.36
HOXC11-202ENST00000546378 GTF3C6Q969F1 213 aa17.3■□□□□ 0.36
HOXC11-202ENST00000546378 SPATA31A3Q5VYP0 1347 aa17.3■□□□□ 0.36
HOXC11-202ENST00000546378 PEAK1Q9H792 1746 aa17.3■□□□□ 0.36
HOXC11-202ENST00000546378 ADAMTS2O95450 1211 aa17.3■□□□□ 0.36
HOXC11-202ENST00000546378 GNL2Q13823 731 aaKnown RBP17.3■□□□□ 0.36
HOXC11-202ENST00000546378 CCDC144BQ3MJ40 725 aa17.3■□□□□ 0.36
HOXC11-202ENST00000546378 CCDC144CPQ8IYA2 1237 aa17.3■□□□□ 0.36
HOXC11-202ENST00000546378 PI4K2BQ8TCG2 481 aa17.3■□□□□ 0.36
HOXC11-202ENST00000546378 GPATCH3Q96I76 525 aa17.3■□□□□ 0.36
HOXC11-202ENST00000546378 ZSWIM4Q9H7M6 989 aa17.3■□□□□ 0.36
HOXC11-202ENST00000546378 ZSCAN20P17040 1043 aaPredicted RBP17.29■□□□□ 0.36
HOXC11-202ENST00000546378 TATP17735 454 aaPredicted RBP17.29■□□□□ 0.36
HOXC11-202ENST00000546378 CDK11BP21127 795 aaKnown RBP17.29■□□□□ 0.36
HOXC11-202ENST00000546378 TTLL5Q6EMB2 1281 aa17.29■□□□□ 0.36
HOXC11-202ENST00000546378 KIAA1524Q8TCG1 905 aa17.29■□□□□ 0.36
HOXC11-202ENST00000546378 CACTINQ8WUQ7 758 aaKnown RBP17.29■□□□□ 0.36
HOXC11-202ENST00000546378 ECHDC1Q9NTX5 307 aa17.29■□□□□ 0.36
HOXC11-202ENST00000546378 MRVI1Q9Y6F6 885 aa17.29■□□□□ 0.36
HOXC11-202ENST00000546378 FAM200AQ8TCP9 573 aa17.29■□□□□ 0.36
HOXC11-202ENST00000546378 GLRX3O76003 335 aaKnown RBP17.28■□□□□ 0.36
HOXC11-202ENST00000546378 ERBB3P21860 1342 aa17.28■□□□□ 0.36
HOXC11-202ENST00000546378 ELF2Q15723 593 aa17.28■□□□□ 0.36
HOXC11-202ENST00000546378 PLCD3Q8N3E9 789 aa17.27■□□□□ 0.36
HOXC11-202ENST00000546378 EAF2Q96CJ1 260 aaPredicted RBP17.27■□□□□ 0.36
HOXC11-202ENST00000546378 PRIMPOLQ96LW4 560 aa17.27■□□□□ 0.36
HOXC11-202ENST00000546378 MAP3K5Q99683 1374 aa17.27■□□□□ 0.36
HOXC11-202ENST00000546378 RXRAP19793 462 aa17.27■□□□□ 0.36
HOXC11-202ENST00000546378 CCDC82Q8N4S0 544 aa17.27■□□□□ 0.36
HOXC11-202ENST00000546378 A0A0G2JLW4 131 aa17.27■□□□□ 0.35
HOXC11-202ENST00000546378 SKILP12757 684 aa17.27■□□□□ 0.35
HOXC11-202ENST00000546378 ANAPC15P60006 121 aa17.26■□□□□ 0.35
HOXC11-202ENST00000546378 APOBRQ0VD83 1088 aa17.26■□□□□ 0.35
HOXC11-202ENST00000546378 C11orf57Q6ZUT1 292 aaPredicted RBP17.26■□□□□ 0.35
HOXC11-202ENST00000546378 MTERF4Q7Z6M4 381 aaKnown RBP17.26■□□□□ 0.35
HOXC11-202ENST00000546378 SMAP1Q8IYB5 467 aaPredicted RBP17.26■□□□□ 0.35
HOXC11-202ENST00000546378 AOPEPQ8N6M6 819 aa17.26■□□□□ 0.35
HOXC11-202ENST00000546378 BICC1Q9H694 974 aaKnown RBP17.26■□□□□ 0.35
HOXC11-202ENST00000546378 KDRP35968 1356 aa17.26■□□□□ 0.35
HOXC11-202ENST00000546378 A0A1B0GVL5 298 aa17.26■□□□□ 0.35
HOXC11-202ENST00000546378 Q6ZUG5 572 aa17.26■□□□□ 0.35
HOXC11-202ENST00000546378 EPC1Q9H2F5 836 aa17.26■□□□□ 0.35
HOXC11-202ENST00000546378 ZNF215Q9UL58 517 aaPredicted RBP17.26■□□□□ 0.35
HOXC11-202ENST00000546378 NRKQ7Z2Y5 1582 aa17.26■□□□□ 0.35
HOXC11-202ENST00000546378 GPHNQ9NQX3 736 aaPredicted RBP17.25■□□□□ 0.35
HOXC11-202ENST00000546378 CEP135Q66GS9 1140 aa17.25■□□□□ 0.35
HOXC11-202ENST00000546378 RGS12O14924 1447 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms