RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 BRIP1Q9BX63 1249 aa19.92■□□□□ 0.78
PRPF40A-212ENST00000545856 NUTM1Q86Y26 1132 aa19.91■□□□□ 0.78
PRPF40A-212ENST00000545856 SIRT2Q8IXJ6 389 aa19.91■□□□□ 0.78
PRPF40A-212ENST00000545856 COPRSQ9NQ92 184 aa19.91■□□□□ 0.78
PRPF40A-212ENST00000545856 NOP58Q9Y2X3 529 aaKnown RBP19.91■□□□□ 0.78
PRPF40A-212ENST00000545856 C10orf71Q711Q0 1435 aa19.9■□□□□ 0.78
PRPF40A-212ENST00000545856 DLEC1Q9Y238 1755 aa19.9■□□□□ 0.78
PRPF40A-212ENST00000545856 CCDC57Q2TAC2 916 aa19.9■□□□□ 0.78
PRPF40A-212ENST00000545856 EPHA10Q5JZY3 1008 aa19.9■□□□□ 0.78
PRPF40A-212ENST00000545856 SMC5Q8IY18 1101 aa19.9■□□□□ 0.78
PRPF40A-212ENST00000545856 DCTPP1Q9H773 170 aa19.9■□□□□ 0.78
PRPF40A-212ENST00000545856 KDM2BQ8NHM5 1336 aa19.9■□□□□ 0.78
PRPF40A-212ENST00000545856 FAM177BA6PVY3 158 aa19.89■□□□□ 0.77
PRPF40A-212ENST00000545856 PDE6BP35913 854 aa19.89■□□□□ 0.77
PRPF40A-212ENST00000545856 IFIT5Q13325 482 aaKnown RBP19.89■□□□□ 0.77
PRPF40A-212ENST00000545856 CRY2Q49AN0 593 aa19.89■□□□□ 0.77
PRPF40A-212ENST00000545856 ERC1Q8IUD2 1116 aa19.89■□□□□ 0.77
PRPF40A-212ENST00000545856 PNMA6EA0A0J9YXQ4 647 aa19.88■□□□□ 0.77
PRPF40A-212ENST00000545856 ANKRD18BA2A2Z9 1011 aa19.88■□□□□ 0.77
PRPF40A-212ENST00000545856 SOCS7O14512 581 aa19.88■□□□□ 0.77
PRPF40A-212ENST00000545856 RAB11FIP3O75154 756 aa19.88■□□□□ 0.77
PRPF40A-212ENST00000545856 HCLS1P14317 486 aaPredicted RBP19.88■□□□□ 0.77
PRPF40A-212ENST00000545856 RTL5Q5HYW3 569 aaPredicted RBP19.88■□□□□ 0.77
PRPF40A-212ENST00000545856 CDC5LQ99459 802 aaKnown RBP19.88■□□□□ 0.77
PRPF40A-212ENST00000545856 CIAO1O76071 339 aa19.87■□□□□ 0.77
PRPF40A-212ENST00000545856 RFX5P48382 616 aaPredicted RBP19.86■□□□□ 0.77
PRPF40A-212ENST00000545856 MSL1Q68DK7 614 aa19.86■□□□□ 0.77
PRPF40A-212ENST00000545856 TMC4Q7Z404 712 aa19.86■□□□□ 0.77
PRPF40A-212ENST00000545856 SYNE4Q8N205 404 aa19.86■□□□□ 0.77
PRPF40A-212ENST00000545856 JARID2Q92833 1246 aaPredicted RBP19.86■□□□□ 0.77
PRPF40A-212ENST00000545856 ITGA6P23229 1130 aa19.85■□□□□ 0.77
PRPF40A-212ENST00000545856 HOXA10P31260 410 aaPredicted RBP19.85■□□□□ 0.77
PRPF40A-212ENST00000545856 CHMP3Q9Y3E7 222 aa19.85■□□□□ 0.77
PRPF40A-212ENST00000545856 COL11A2P13942 1736 aaPredicted RBP19.85■□□□□ 0.77
PRPF40A-212ENST00000545856 PTPN12Q05209 780 aaKnown RBP19.84■□□□□ 0.77
PRPF40A-212ENST00000545856 FAM161AQ3B820 660 aa19.84■□□□□ 0.77
PRPF40A-212ENST00000545856 GREM2Q9H772 168 aa19.84■□□□□ 0.77
PRPF40A-212ENST00000545856 IL15P40933 162 aaPredicted RBP19.83■□□□□ 0.77
PRPF40A-212ENST00000545856 TAF7LQ5H9L4 462 aa19.83■□□□□ 0.77
PRPF40A-212ENST00000545856 DDX46Q7L014 1031 aaKnown RBP19.83■□□□□ 0.77
PRPF40A-212ENST00000545856 CRAMP1Q96RY5 1269 aa19.83■□□□□ 0.77
PRPF40A-212ENST00000545856 SGIP1Q9BQI5 828 aa19.83■□□□□ 0.77
PRPF40A-212ENST00000545856 PDGFDQ9GZP0 370 aaPredicted RBP19.83■□□□□ 0.77
PRPF40A-212ENST00000545856 SPEF2Q9C093 1822 aa19.83■□□□□ 0.76
PRPF40A-212ENST00000545856 IGHDP01880 384 aa19.83■□□□□ 0.76
PRPF40A-212ENST00000545856 IGHMBP2P38935 993 aaKnown RBP19.83■□□□□ 0.76
PRPF40A-212ENST00000545856 G3BP1Q13283 466 aaKnown RBP eCLIP19.83■□□□□ 0.766e-8■□□□□ 11.3
PRPF40A-212ENST00000545856 B4GALNT3Q6L9W6 998 aa19.83■□□□□ 0.76
PRPF40A-212ENST00000545856 RPGRQ92834 1020 aaKnown RBP19.83■□□□□ 0.76
PRPF40A-212ENST00000545856 KIF1BPQ96EK5 621 aa19.83■□□□□ 0.76
PRPF40A-212ENST00000545856 RBM17Q96I25 401 aaKnown RBP19.83■□□□□ 0.76
PRPF40A-212ENST00000545856 ZBTB47Q9UFB7 747 aaPredicted RBP19.83■□□□□ 0.76
PRPF40A-212ENST00000545856 A0A1B0GUL6 1792 aa19.82■□□□□ 0.76
PRPF40A-212ENST00000545856 LRRC37AA6NMS7 1700 aa19.82■□□□□ 0.76
PRPF40A-212ENST00000545856 EYA2O00167 538 aa19.82■□□□□ 0.76
PRPF40A-212ENST00000545856 SURF6O75683 361 aaKnown RBP19.82■□□□□ 0.76
PRPF40A-212ENST00000545856 ZBTB7AO95365 584 aa19.82■□□□□ 0.76
PRPF40A-212ENST00000545856 NPR1P16066 1061 aa19.82■□□□□ 0.76
PRPF40A-212ENST00000545856 SPON1Q9HCB6 807 aa19.82■□□□□ 0.76
PRPF40A-212ENST00000545856 ALDH1B1P30837 517 aa19.81■□□□□ 0.76
PRPF40A-212ENST00000545856 MASTLQ96GX5 879 aa19.81■□□□□ 0.76
PRPF40A-212ENST00000545856 MROH5Q6ZUA9 1318 aa19.8■□□□□ 0.76
PRPF40A-212ENST00000545856 PSDA5PKW4 1024 aaPredicted RBP19.8■□□□□ 0.76
PRPF40A-212ENST00000545856 SRGNP10124 158 aa19.8■□□□□ 0.76
PRPF40A-212ENST00000545856 TGFB2P61812 414 aa19.8■□□□□ 0.76
PRPF40A-212ENST00000545856 GRAPQ13588 217 aa19.8■□□□□ 0.76
PRPF40A-212ENST00000545856 STYK1Q6J9G0 422 aa19.8■□□□□ 0.76
PRPF40A-212ENST00000545856 ANKRD18AQ8IVF6 992 aa19.8■□□□□ 0.76
PRPF40A-212ENST00000545856 GRAPLQ8TC17 118 aaPredicted RBP19.8■□□□□ 0.76
PRPF40A-212ENST00000545856 MPHOSPH8Q99549 860 aa19.8■□□□□ 0.76
PRPF40A-212ENST00000545856 LRRCC1Q9C099 1032 aa19.8■□□□□ 0.76
PRPF40A-212ENST00000545856 GPR108Q9NPR9 543 aa19.8■□□□□ 0.76
PRPF40A-212ENST00000545856 BSDC1Q9NW68 430 aaPredicted RBP19.8■□□□□ 0.76
PRPF40A-212ENST00000545856 CD2APQ9Y5K6 639 aa19.8■□□□□ 0.76
PRPF40A-212ENST00000545856 KIAA1551Q9HCM1 1747 aa19.79■□□□□ 0.76
PRPF40A-212ENST00000545856 H0YIN7 160 aa19.79■□□□□ 0.76
PRPF40A-212ENST00000545856 BBOX1O75936 387 aa19.79■□□□□ 0.76
PRPF40A-212ENST00000545856 BRCA1P38398 1863 aaKnown RBP19.79■□□□□ 0.76
PRPF40A-212ENST00000545856 PTGER2P43116 358 aa19.78■□□□□ 0.76
PRPF40A-212ENST00000545856 RPS8P62241 208 aaKnown RBP19.78■□□□□ 0.76
PRPF40A-212ENST00000545856 NUCB1Q02818 461 aa19.78■□□□□ 0.76
PRPF40A-212ENST00000545856 OS9Q13438 667 aaPredicted RBP19.78■□□□□ 0.76
PRPF40A-212ENST00000545856 LDHAL6AQ6ZMR3 332 aa19.78■□□□□ 0.76
PRPF40A-212ENST00000545856 C3orf67Q6ZVT6 689 aa19.78■□□□□ 0.76
PRPF40A-212ENST00000545856 TAF1P21675 1872 aa19.77■□□□□ 0.76
PRPF40A-212ENST00000545856 ARAP2Q8WZ64 1704 aa19.77■□□□□ 0.76
PRPF40A-212ENST00000545856 EXOC6BQ9Y2D4 811 aa19.77■□□□□ 0.76
PRPF40A-212ENST00000545856 RHPN1Q8TCX5 695 aa19.76■□□□□ 0.75
PRPF40A-212ENST00000545856 CNKSR1Q969H4 720 aa19.76■□□□□ 0.75
PRPF40A-212ENST00000545856 CNNM1Q9NRU3 951 aa19.76■□□□□ 0.75
PRPF40A-212ENST00000545856 ATF5Q9Y2D1 282 aaPredicted RBP19.76■□□□□ 0.75
PRPF40A-212ENST00000545856 GRIPAP1Q4V328 841 aa19.75■□□□□ 0.75
PRPF40A-212ENST00000545856 ATG9AQ7Z3C6 839 aa19.75■□□□□ 0.75
PRPF40A-212ENST00000545856 ANKRD2Q9GZV1 360 aa19.75■□□□□ 0.75
PRPF40A-212ENST00000545856 PA2G4Q9UQ80 394 aaKnown RBP19.75■□□□□ 0.75
PRPF40A-212ENST00000545856 AKAP2Q9Y2D5 859 aa19.75■□□□□ 0.75
PRPF40A-212ENST00000545856 RIPOR2Q9Y4F9 1068 aa19.75■□□□□ 0.75
PRPF40A-212ENST00000545856 CACNA1SQ13698 1873 aa19.75■□□□□ 0.75
PRPF40A-212ENST00000545856 CC2D2BQ6DHV5 1058 aa19.74■□□□□ 0.75
PRPF40A-212ENST00000545856 CHD1LQ86WJ1 897 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms