RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 BRPF1P55201 1214 aaPredicted RBP16.99■□□□□ 0.31
USP28-212ENST00000544750 KIAA2012Q0VF49 1180 aa16.99■□□□□ 0.31
USP28-212ENST00000544750 SP8Q8IXZ3 490 aa16.99■□□□□ 0.31
USP28-212ENST00000544750 SUPT20HQ8NEM7 779 aa16.99■□□□□ 0.31
USP28-212ENST00000544750 ZC3H15Q8WU90 426 aaKnown RBP16.99■□□□□ 0.31
USP28-212ENST00000544750 MCOLN1Q9GZU1 580 aa16.99■□□□□ 0.31
USP28-212ENST00000544750 PDE4DIPQ5VU43 2346 aa16.98■□□□□ 0.31
USP28-212ENST00000544750 NFE2L2Q16236 605 aa16.98■□□□□ 0.31
USP28-212ENST00000544750 CIAPIN1Q6FI81 312 aa16.98■□□□□ 0.31
USP28-212ENST00000544750 UTP14AQ9BVJ6 771 aaKnown RBP16.98■□□□□ 0.31
USP28-212ENST00000544750 AKAP11Q9UKA4 1901 aa16.98■□□□□ 0.31
USP28-212ENST00000544750 YDJCA8MPS7 323 aa16.97■□□□□ 0.31
USP28-212ENST00000544750 BBOX1O75936 387 aa16.97■□□□□ 0.31
USP28-212ENST00000544750 TRPM4Q8TD43 1214 aa16.97■□□□□ 0.31
USP28-212ENST00000544750 SHTN1A0MZ66 631 aa16.96■□□□□ 0.31
USP28-212ENST00000544750 PROSER3Q2NL68 480 aa16.96■□□□□ 0.31
USP28-212ENST00000544750 DPP8Q6V1X1 898 aaPredicted RBP16.96■□□□□ 0.31
USP28-212ENST00000544750 MPNDQ8N594 471 aa16.96■□□□□ 0.31
USP28-212ENST00000544750 ZIC5Q96T25 663 aa16.96■□□□□ 0.31
USP28-212ENST00000544750 RAD17O75943 681 aa16.95■□□□□ 0.3
USP28-212ENST00000544750 CDC37L1Q7L3B6 337 aa16.95■□□□□ 0.3
USP28-212ENST00000544750 TMX4Q9H1E5 349 aaPredicted RBP16.95■□□□□ 0.3
USP28-212ENST00000544750 ANXA1P04083 346 aa16.94■□□□□ 0.3
USP28-212ENST00000544750 TNIP1Q15025 636 aa16.94■□□□□ 0.3
USP28-212ENST00000544750 NLRP10Q86W26 655 aa16.94■□□□□ 0.3
USP28-212ENST00000544750 BCL2L13Q9BXK5 485 aa16.94■□□□□ 0.3
USP28-212ENST00000544750 CNOT7Q9UIV1 285 aaKnown RBP16.94■□□□□ 0.3
USP28-212ENST00000544750 SCN9AQ15858 1988 aa16.94■□□□□ 0.3
USP28-212ENST00000544750 NEFMP07197 916 aa16.93■□□□□ 0.3
USP28-212ENST00000544750 HCLS1P14317 486 aaPredicted RBP16.93■□□□□ 0.3
USP28-212ENST00000544750 NOGQ13253 232 aa16.93■□□□□ 0.3
USP28-212ENST00000544750 COL4A1P02462 1669 aa16.93■□□□□ 0.3
USP28-212ENST00000544750 DGKZQ13574 1117 aa16.92■□□□□ 0.3
USP28-212ENST00000544750 GRAPQ13588 217 aa16.92■□□□□ 0.3
USP28-212ENST00000544750 DLK2Q6UY11 383 aa16.92■□□□□ 0.3
USP28-212ENST00000544750 GRAPLQ8TC17 118 aaPredicted RBP16.92■□□□□ 0.3
USP28-212ENST00000544750 ZNF408Q9H9D4 720 aa16.92■□□□□ 0.3
USP28-212ENST00000544750 PSME4Q14997 1843 aa16.91■□□□□ 0.3
USP28-212ENST00000544750 FAM155AB1AL88 458 aaPredicted RBP16.91■□□□□ 0.3
USP28-212ENST00000544750 EIF2S2P20042 333 aaKnown RBP16.91■□□□□ 0.3
USP28-212ENST00000544750 USP48Q86UV5 1035 aa16.91■□□□□ 0.3
USP28-212ENST00000544750 MICALL2Q8IY33 904 aa16.91■□□□□ 0.3
USP28-212ENST00000544750 DPF2Q92785 391 aa16.91■□□□□ 0.3
USP28-212ENST00000544750 TSPYL4Q9UJ04 414 aa16.91■□□□□ 0.3
USP28-212ENST00000544750 HUNKP57058 714 aa16.9■□□□□ 0.3
USP28-212ENST00000544750 TCIRG1Q13488 830 aa16.9■□□□□ 0.3
USP28-212ENST00000544750 HSP90AB3PQ58FF7 597 aa16.9■□□□□ 0.3
USP28-212ENST00000544750 DDX46Q7L014 1031 aaKnown RBP16.9■□□□□ 0.3
USP28-212ENST00000544750 COPS6Q7L5N1 327 aa16.9■□□□□ 0.3
USP28-212ENST00000544750 TMC4Q7Z404 712 aa16.9■□□□□ 0.3
USP28-212ENST00000544750 BABAM1Q9NWV8 329 aa16.9■□□□□ 0.3
USP28-212ENST00000544750 ZBTB12Q9Y330 459 aaPredicted RBP16.9■□□□□ 0.3
USP28-212ENST00000544750 SH3TC1Q8TE82 1336 aa16.9■□□□□ 0.3
USP28-212ENST00000544750 H7C1D1 291 aa16.89■□□□□ 0.29
USP28-212ENST00000544750 PSMD14O00487 310 aa16.89■□□□□ 0.29
USP28-212ENST00000544750 EGFRP00533 1210 aa16.89■□□□□ 0.29
USP28-212ENST00000544750 SAMD7Q7Z3H4 446 aa16.89■□□□□ 0.29
USP28-212ENST00000544750 XAGE3Q8WTP9 111 aa16.89■□□□□ 0.29
USP28-212ENST00000544750 PCDH10Q9P2E7 1040 aa16.89■□□□□ 0.29
USP28-212ENST00000544750 TRMT112Q9UI30 125 aaKnown RBP16.89■□□□□ 0.29
USP28-212ENST00000544750 RGMBQ6NW40 437 aa16.88■□□□□ 0.29
USP28-212ENST00000544750 CFAP44Q96MT7 982 aa16.87■□□□□ 0.29
USP28-212ENST00000544750 GBA2Q9HCG7 927 aaPredicted RBP16.87■□□□□ 0.29
USP28-212ENST00000544750 SAGE1Q9NXZ1 904 aa16.87■□□□□ 0.29
USP28-212ENST00000544750 RTL9Q8NET4 1388 aa16.87■□□□□ 0.29
USP28-212ENST00000544750 AIMP1Q12904 312 aaKnown RBP16.86■□□□□ 0.29
USP28-212ENST00000544750 WASHC4Q2M389 1173 aa16.86■□□□□ 0.29
USP28-212ENST00000544750 KRT26Q7Z3Y9 468 aa16.86■□□□□ 0.29
USP28-212ENST00000544750 CELF1Q92879 486 aaKnown RBP16.86■□□□□ 0.29
USP28-212ENST00000544750 PNNQ9H307 717 aaKnown RBP16.86■□□□□ 0.29
USP28-212ENST00000544750 DBNDD1Q9H9R9 158 aa16.86■□□□□ 0.29
USP28-212ENST00000544750 KCNQ5Q9NR82 932 aa16.86■□□□□ 0.29
USP28-212ENST00000544750 POLLQ9UGP5 575 aa16.86■□□□□ 0.29
USP28-212ENST00000544750 MAPK8IP3Q9UPT6 1336 aa16.86■□□□□ 0.29
USP28-212ENST00000544750 RPS12P25398 132 aaKnown RBP16.85■□□□□ 0.29
USP28-212ENST00000544750 SF3B3Q15393 1217 aaKnown RBP16.85■□□□□ 0.29
USP28-212ENST00000544750 TBC1D10BQ4KMP7 808 aaPredicted RBP16.85■□□□□ 0.29
USP28-212ENST00000544750 ADM5C9JUS6 153 aa16.84■□□□□ 0.29
USP28-212ENST00000544750 RIPK4P57078 832 aa16.84■□□□□ 0.29
USP28-212ENST00000544750 KIF23Q02241 960 aaPredicted RBP16.84■□□□□ 0.29
USP28-212ENST00000544750 NECTIN2Q92692 538 aa16.84■□□□□ 0.29
USP28-212ENST00000544750 CCDC102AQ96A19 550 aa16.84■□□□□ 0.29
USP28-212ENST00000544750 ISCA1Q9BUE6 129 aa16.84■□□□□ 0.29
USP28-212ENST00000544750 NSFL1CQ9UNZ2 370 aaKnown RBP16.84■□□□□ 0.29
USP28-212ENST00000544750 GPSM2P81274 684 aa16.83■□□□□ 0.28
USP28-212ENST00000544750 C2orf69Q8N8R5 385 aa16.83■□□□□ 0.28
USP28-212ENST00000544750 RNF186Q9NXI6 227 aa16.83■□□□□ 0.28
USP28-212ENST00000544750 ZNF609O15014 1411 aa16.82■□□□□ 0.28
USP28-212ENST00000544750 RIMBP2O15034 1052 aa16.82■□□□□ 0.28
USP28-212ENST00000544750 ECE2O60344 883 aa16.82■□□□□ 0.28
USP28-212ENST00000544750 SLC10A3P09131 477 aa16.82■□□□□ 0.28
USP28-212ENST00000544750 TMPOP42166 694 aaKnown RBP16.82■□□□□ 0.28
USP28-212ENST00000544750 KRT24Q2M2I5 525 aa16.82■□□□□ 0.28
USP28-212ENST00000544750 ZNF428Q96B54 188 aa16.82■□□□□ 0.28
USP28-212ENST00000544750 ZNF646O15015 1829 aaPredicted RBP16.82■□□□□ 0.28
USP28-212ENST00000544750 CHL1O00533 1208 aa16.81■□□□□ 0.28
USP28-212ENST00000544750 TRPA1O75762 1119 aa16.81■□□□□ 0.28
USP28-212ENST00000544750 VIL1P09327 827 aaKnown RBP16.81■□□□□ 0.28
USP28-212ENST00000544750 ZNF157P51786 506 aaPredicted RBP16.81■□□□□ 0.28
USP28-212ENST00000544750 PLBD2Q8NHP8 589 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms