RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 MPRIPQ6WCQ1 1025 aa16.47■□□□□ 0.23
LIMS1-215ENST00000544547 CLEC17AQ6ZS10 378 aa16.47■□□□□ 0.23
LIMS1-215ENST00000544547 CCDC47Q96A33 483 aaKnown RBP16.47■□□□□ 0.23
LIMS1-215ENST00000544547 CROCC2H7BZ55 1655 aa16.47■□□□□ 0.23
LIMS1-215ENST00000544547 CDR1P51861 262 aa16.47■□□□□ 0.23
LIMS1-215ENST00000544547 FBXO38Q6PIJ6 1188 aa16.47■□□□□ 0.23
LIMS1-215ENST00000544547 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.47■□□□□ 0.23
LIMS1-215ENST00000544547 CEBPAP49715 358 aaPredicted RBP16.47■□□□□ 0.23
LIMS1-215ENST00000544547 IRX5P78411 483 aaPredicted RBP16.47■□□□□ 0.23
LIMS1-215ENST00000544547 PLEKHO1Q53GL0 409 aaPredicted RBP16.47■□□□□ 0.23
LIMS1-215ENST00000544547 DDX41Q9UJV9 622 aaKnown RBP16.47■□□□□ 0.23
LIMS1-215ENST00000544547 RAD50Q92878 1312 aa16.46■□□□□ 0.23
LIMS1-215ENST00000544547 DDIT3P35638 169 aa16.46■□□□□ 0.23
LIMS1-215ENST00000544547 PROSER2Q86WR7 435 aaPredicted RBP16.46■□□□□ 0.23
LIMS1-215ENST00000544547 CTNNA3Q9UI47 895 aa16.46■□□□□ 0.23
LIMS1-215ENST00000544547 ABCC1P33527 1531 aa16.46■□□□□ 0.23
LIMS1-215ENST00000544547 PNMA6EA0A0J9YXQ4 647 aa16.46■□□□□ 0.23
LIMS1-215ENST00000544547 RHOXF2BP0C7M4 288 aa16.46■□□□□ 0.23
LIMS1-215ENST00000544547 RHOXF2Q9BQY4 288 aa16.46■□□□□ 0.23
LIMS1-215ENST00000544547 GBP3Q9H0R5 595 aa16.46■□□□□ 0.23
LIMS1-215ENST00000544547 ABCC4O15439 1325 aa16.46■□□□□ 0.22
LIMS1-215ENST00000544547 NR1I2O75469 434 aa16.45■□□□□ 0.22
LIMS1-215ENST00000544547 IVLP07476 585 aa16.45■□□□□ 0.22
LIMS1-215ENST00000544547 ARID5BQ14865 1188 aa16.45■□□□□ 0.22
LIMS1-215ENST00000544547 ST7Q9NRC1 585 aa16.45■□□□□ 0.22
LIMS1-215ENST00000544547 LRRC8AQ8IWT6 810 aa16.45■□□□□ 0.22
LIMS1-215ENST00000544547 LEO1Q8WVC0 666 aaPredicted RBP16.45■□□□□ 0.22
LIMS1-215ENST00000544547 C8orf76Q96K31 380 aa16.45■□□□□ 0.22
LIMS1-215ENST00000544547 CLSTN2Q9H4D0 955 aa16.45■□□□□ 0.22
LIMS1-215ENST00000544547 A0A1B0GVL5 298 aa16.45■□□□□ 0.22
LIMS1-215ENST00000544547 MTMR6Q9Y217 621 aa16.45■□□□□ 0.22
LIMS1-215ENST00000544547 NEK1Q96PY6 1258 aa16.44■□□□□ 0.22
LIMS1-215ENST00000544547 RABEP2Q9H5N1 569 aa16.44■□□□□ 0.22
LIMS1-215ENST00000544547 LZTFL1Q9NQ48 299 aa16.44■□□□□ 0.22
LIMS1-215ENST00000544547 MRVI1Q9Y6F6 885 aa16.44■□□□□ 0.22
LIMS1-215ENST00000544547 MYO5CQ9NQX4 1742 aa16.44■□□□□ 0.22
LIMS1-215ENST00000544547 RIMS2Q9UQ26 1411 aa16.44■□□□□ 0.22
LIMS1-215ENST00000544547 SHTN1A0MZ66 631 aa16.44■□□□□ 0.22
LIMS1-215ENST00000544547 CHL1O00533 1208 aa16.44■□□□□ 0.22
LIMS1-215ENST00000544547 SEC31AO94979 1220 aaKnown RBP16.44■□□□□ 0.22
LIMS1-215ENST00000544547 PHAXQ9H814 394 aaKnown RBP16.44■□□□□ 0.22
LIMS1-215ENST00000544547 SMC1AQ14683 1233 aaKnown RBP16.43■□□□□ 0.22
LIMS1-215ENST00000544547 EVI5LQ96CN4 794 aa16.43■□□□□ 0.22
LIMS1-215ENST00000544547 AMOTL2Q9Y2J4 779 aa16.43■□□□□ 0.22
LIMS1-215ENST00000544547 UNC5CLQ8IV45 518 aa16.43■□□□□ 0.22
LIMS1-215ENST00000544547 ZSCAN16Q9H4T2 348 aaPredicted RBP16.43■□□□□ 0.22
LIMS1-215ENST00000544547 TCEAL9Q9UHQ7 104 aa16.43■□□□□ 0.22
LIMS1-215ENST00000544547 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.43■□□□□ 0.22
LIMS1-215ENST00000544547 CYP2E1P05181 493 aaPredicted RBP16.43■□□□□ 0.22
LIMS1-215ENST00000544547 HSPA4P34932 840 aa16.43■□□□□ 0.22
LIMS1-215ENST00000544547 PPP2R3AQ06190 1150 aa16.43■□□□□ 0.22
LIMS1-215ENST00000544547 CREB3L3Q68CJ9 461 aa16.43■□□□□ 0.22
LIMS1-215ENST00000544547 SAMD1Q6SPF0 538 aaPredicted RBP16.43■□□□□ 0.22
LIMS1-215ENST00000544547 RUFY3Q7L099 469 aa16.43■□□□□ 0.22
LIMS1-215ENST00000544547 CUL4AQ13619 759 aa16.43■□□□□ 0.22
LIMS1-215ENST00000544547 MARCKSP29966 332 aaPredicted RBP16.42■□□□□ 0.22
LIMS1-215ENST00000544547 RNF187Q5TA31 235 aaPredicted RBP16.42■□□□□ 0.22
LIMS1-215ENST00000544547 CTR9Q6PD62 1173 aa16.42■□□□□ 0.22
LIMS1-215ENST00000544547 MRPS27Q92552 414 aaKnown RBP16.42■□□□□ 0.22
LIMS1-215ENST00000544547 ERCC6L2Q5T890 1561 aa16.42■□□□□ 0.22
LIMS1-215ENST00000544547 IQGAP3Q86VI3 1631 aa16.42■□□□□ 0.22
LIMS1-215ENST00000544547 SGSM2O43147 1006 aa16.42■□□□□ 0.22
LIMS1-215ENST00000544547 PA2G4Q9UQ80 394 aaKnown RBP16.42■□□□□ 0.22
LIMS1-215ENST00000544547 A0A1B0GUL7 405 aa16.42■□□□□ 0.22
LIMS1-215ENST00000544547 KMT5BQ4FZB7 885 aa16.42■□□□□ 0.22
LIMS1-215ENST00000544547 RASEFQ8IZ41 740 aa16.42■□□□□ 0.22
LIMS1-215ENST00000544547 GOLGA1Q92805 767 aa16.42■□□□□ 0.22
LIMS1-215ENST00000544547 SPTLC3Q9NUV7 552 aa16.42■□□□□ 0.22
LIMS1-215ENST00000544547 CTDP1Q9Y5B0 961 aaPredicted RBP16.42■□□□□ 0.22
LIMS1-215ENST00000544547 ZFYVE9O95405 1425 aa16.41■□□□□ 0.22
LIMS1-215ENST00000544547 CNNM3Q8NE01 707 aa16.41■□□□□ 0.22
LIMS1-215ENST00000544547 EYA1Q99502 592 aa16.41■□□□□ 0.22
LIMS1-215ENST00000544547 PRM3Q9NNZ6 103 aa16.41■□□□□ 0.22
LIMS1-215ENST00000544547 MTMR7Q9Y216 660 aa16.41■□□□□ 0.22
LIMS1-215ENST00000544547 ME3Q16798 604 aa16.41■□□□□ 0.22
LIMS1-215ENST00000544547 Q6ZUG5 572 aa16.41■□□□□ 0.22
LIMS1-215ENST00000544547 FAM107BQ9H098 131 aa16.41■□□□□ 0.22
LIMS1-215ENST00000544547 CHPF2Q9P2E5 772 aa16.41■□□□□ 0.22
LIMS1-215ENST00000544547 CLTCL1P53675 1640 aa16.4■□□□□ 0.22
LIMS1-215ENST00000544547 FKBP4Q02790 459 aaKnown RBP eCLIP16.4■□□□□ 0.22
LIMS1-215ENST00000544547 NMIQ13287 307 aaPredicted RBP16.4■□□□□ 0.22
LIMS1-215ENST00000544547 STRN4Q9NRL3 753 aa16.4■□□□□ 0.22
LIMS1-215ENST00000544547 CHST3Q7LGC8 479 aa16.4■□□□□ 0.22
LIMS1-215ENST00000544547 THEMISQ8N1K5 641 aaPredicted RBP16.4■□□□□ 0.22
LIMS1-215ENST00000544547 PLCD4Q9BRC7 762 aa16.4■□□□□ 0.22
LIMS1-215ENST00000544547 KCNF1Q9H3M0 494 aa16.4■□□□□ 0.22
LIMS1-215ENST00000544547 JAK2O60674 1132 aa16.4■□□□□ 0.22
LIMS1-215ENST00000544547 RRP12Q5JTH9 1297 aaKnown RBP16.4■□□□□ 0.22
LIMS1-215ENST00000544547 CCDC82Q8N4S0 544 aa16.4■□□□□ 0.22
LIMS1-215ENST00000544547 MAP3K19Q56UN5 1328 aa16.39■□□□□ 0.21
LIMS1-215ENST00000544547 GYS2P54840 703 aa16.39■□□□□ 0.21
LIMS1-215ENST00000544547 DNAJC21Q5F1R6 531 aaKnown RBP16.39■□□□□ 0.21
LIMS1-215ENST00000544547 DACH1Q9UI36 760 aa16.39■□□□□ 0.21
LIMS1-215ENST00000544547 TBC1D2BQ9UPU7 963 aa16.39■□□□□ 0.21
LIMS1-215ENST00000544547 CDC42BPBQ9Y5S2 1711 aa16.39■□□□□ 0.21
LIMS1-215ENST00000544547 TATP17735 454 aaPredicted RBP16.39■□□□□ 0.21
LIMS1-215ENST00000544547 XPO4Q9C0E2 1151 aaKnown RBP16.39■□□□□ 0.21
LIMS1-215ENST00000544547 MAP3K2Q9Y2U5 619 aa16.39■□□□□ 0.21
LIMS1-215ENST00000544547 ANKRD65E5RJM6 399 aa16.38■□□□□ 0.21
LIMS1-215ENST00000544547 ZCCHC17Q9NP64 241 aaKnown RBP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms