RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	CSF1R	P07333	972 aa		12.68	□□□□□ -0.38
CPSF7-221	ENST00000543545	SRGN	P10124	158 aa		12.68	□□□□□ -0.38
CPSF7-221	ENST00000543545	FAM161A	Q3B820	660 aa		12.68	□□□□□ -0.38
CPSF7-221	ENST00000543545	ANKRD44	Q8N8A2	993 aa		12.68	□□□□□ -0.38
CPSF7-221	ENST00000543545	MASTL	Q96GX5	879 aa		12.68	□□□□□ -0.38
CPSF7-221	ENST00000543545	GREM2	Q9H772	168 aa		12.68	□□□□□ -0.38
CPSF7-221	ENST00000543545	WWC3	Q9ULE0	1092 aa		12.68	□□□□□ -0.38
CPSF7-221	ENST00000543545	BCOR	Q6W2J9	1755 aa		12.68	□□□□□ -0.38
CPSF7-221	ENST00000543545	ARFGEF2	Q9Y6D5	1785 aa		12.68	□□□□□ -0.38
CPSF7-221	ENST00000543545	KLRG2	A4D1S0	409 aa	Predicted RBP	12.67	□□□□□ -0.38
CPSF7-221	ENST00000543545	SRGAP3	O43295	1099 aa		12.67	□□□□□ -0.38
CPSF7-221	ENST00000543545	ITGA6	P23229	1130 aa		12.67	□□□□□ -0.38
CPSF7-221	ENST00000543545	ALDH1B1	P30837	517 aa		12.67	□□□□□ -0.38
CPSF7-221	ENST00000543545	RABL6	Q3YEC7	729 aa	Predicted RBP	12.67	□□□□□ -0.38
CPSF7-221	ENST00000543545	CRY2	Q49AN0	593 aa		12.67	□□□□□ -0.38
CPSF7-221	ENST00000543545	STYK1	Q6J9G0	422 aa		12.67	□□□□□ -0.38
CPSF7-221	ENST00000543545	CNKSR1	Q969H4	720 aa		12.67	□□□□□ -0.38
CPSF7-221	ENST00000543545	CDC5L	Q99459	802 aa	Known RBP	12.67	□□□□□ -0.38
CPSF7-221	ENST00000543545	SEC31B	Q9NQW1	1179 aa		12.67	□□□□□ -0.38
CPSF7-221	ENST00000543545	C10orf71	Q711Q0	1435 aa		12.67	□□□□□ -0.38
CPSF7-221	ENST00000543545	NUP98	P52948	1817 aa		12.67	□□□□□ -0.38
CPSF7-221	ENST00000543545	IGHMBP2	P38935	993 aa	Known RBP	12.66	□□□□□ -0.38
CPSF7-221	ENST00000543545	ATP8B2	P98198	1209 aa		12.66	□□□□□ -0.38
CPSF7-221	ENST00000543545	AAMP	Q13685	434 aa		12.66	□□□□□ -0.38
CPSF7-221	ENST00000543545	ANKRD18A	Q8IVF6	992 aa		12.66	□□□□□ -0.38
CPSF7-221	ENST00000543545	NLGN2	Q8NFZ4	835 aa		12.66	□□□□□ -0.38
CPSF7-221	ENST00000543545	SYT17	Q9BSW7	474 aa		12.66	□□□□□ -0.38
CPSF7-221	ENST00000543545	TMX4	Q9H1E5	349 aa	Predicted RBP	12.66	□□□□□ -0.38
CPSF7-221	ENST00000543545	PIM2	Q9P1W9	311 aa		12.66	□□□□□ -0.38
CPSF7-221	ENST00000543545	HMMR	O75330	724 aa		12.65	□□□□□ -0.38
CPSF7-221	ENST00000543545	HOXA10	P31260	410 aa	Predicted RBP	12.65	□□□□□ -0.38
CPSF7-221	ENST00000543545	RPS8	P62241	208 aa	Known RBP	12.65	□□□□□ -0.38
CPSF7-221	ENST00000543545	GRAP	Q13588	217 aa		12.65	□□□□□ -0.38
CPSF7-221	ENST00000543545	CEP85	Q6P2H3	762 aa		12.65	□□□□□ -0.38
CPSF7-221	ENST00000543545	RPAP2	Q8IXW5	612 aa	Predicted RBP	12.65	□□□□□ -0.38
CPSF7-221	ENST00000543545	PELP1	Q8IZL8	1130 aa	Known RBP	12.65	□□□□□ -0.38
CPSF7-221	ENST00000543545	TTLL6	Q8N841	843 aa		12.65	□□□□□ -0.38
CPSF7-221	ENST00000543545	GRAPL	Q8TC17	118 aa	Predicted RBP	12.65	□□□□□ -0.38
CPSF7-221	ENST00000543545	CRAMP1	Q96RY5	1269 aa		12.65	□□□□□ -0.38
CPSF7-221	ENST00000543545	MPHOSPH8	Q99549	860 aa		12.65	□□□□□ -0.38
CPSF7-221	ENST00000543545	ZNF219	Q9P2Y4	722 aa	Predicted RBP	12.65	□□□□□ -0.38
CPSF7-221	ENST00000543545	PNMA6E	A0A0J9YXQ4	647 aa		12.64	□□□□□ -0.39
CPSF7-221	ENST00000543545	BBOX1	O75936	387 aa		12.64	□□□□□ -0.39
CPSF7-221	ENST00000543545	DALRD3	Q5D0E6	543 aa	Known RBP	12.64	□□□□□ -0.39
CPSF7-221	ENST00000543545	CELF1	Q92879	486 aa	Known RBP	12.64	□□□□□ -0.39
CPSF7-221	ENST00000543545	ZNF594	Q96JF6	807 aa	Predicted RBP	12.64	□□□□□ -0.39
CPSF7-221	ENST00000543545	RIC1	Q4ADV7	1423 aa		12.63	□□□□□ -0.39
CPSF7-221	ENST00000543545	KCNA3	P22001	575 aa		12.63	□□□□□ -0.39
CPSF7-221	ENST00000543545	OS9	Q13438	667 aa	Predicted RBP	12.63	□□□□□ -0.39
CPSF7-221	ENST00000543545	MTX1	Q13505	466 aa		12.63	□□□□□ -0.39
CPSF7-221	ENST00000543545	LDHAL6A	Q6ZMR3	332 aa		12.63	□□□□□ -0.39
CPSF7-221	ENST00000543545	KLHDC4	Q8TBB5	520 aa		12.63	□□□□□ -0.39
CPSF7-221	ENST00000543545	CNNM1	Q9NRU3	951 aa		12.63	□□□□□ -0.39
CPSF7-221	ENST00000543545	BCS1L	Q9Y276	419 aa		12.63	□□□□□ -0.39
CPSF7-221	ENST00000543545	PCDHB15	Q9Y5E8	787 aa		12.63	□□□□□ -0.39
CPSF7-221	ENST00000543545	PPEF1	O14829	653 aa	Predicted RBP	12.62	□□□□□ -0.39
CPSF7-221	ENST00000543545	SURF6	O75683	361 aa	Known RBP	12.62	□□□□□ -0.39
CPSF7-221	ENST00000543545	G3BP1	Q13283	466 aa	Known RBP eCLIP	12.62	□□□□□ -0.39
CPSF7-221	ENST00000543545	PRPF40B	Q6NWY9	871 aa	Known RBP	12.62	□□□□□ -0.39
CPSF7-221	ENST00000543545	SIL1	Q9H173	461 aa		12.62	□□□□□ -0.39
CPSF7-221	ENST00000543545	PA2G4	Q9UQ80	394 aa	Known RBP	12.62	□□□□□ -0.39
CPSF7-221	ENST00000543545	RTL9	Q8NET4	1388 aa		12.61	□□□□□ -0.39
CPSF7-221	ENST00000543545	C21orf2	O43822	256 aa		12.61	□□□□□ -0.39
CPSF7-221	ENST00000543545	RFX5	P48382	616 aa	Predicted RBP	12.61	□□□□□ -0.39
CPSF7-221	ENST00000543545	SSH3	Q8TE77	659 aa		12.61	□□□□□ -0.39
CPSF7-221	ENST00000543545	RWDD1	Q9H446	243 aa	Predicted RBP	12.61	□□□□□ -0.39
CPSF7-221	ENST00000543545	BSDC1	Q9NW68	430 aa	Predicted RBP	12.61	□□□□□ -0.39
CPSF7-221	ENST00000543545	COL24A1	Q17RW2	1714 aa		12.6	□□□□□ -0.39
CPSF7-221	ENST00000543545	EYA2	O00167	538 aa		12.6	□□□□□ -0.39
CPSF7-221	ENST00000543545	PTPN12	Q05209	780 aa	Known RBP	12.6	□□□□□ -0.39
CPSF7-221	ENST00000543545	POLA2	Q14181	598 aa		12.6	□□□□□ -0.39
CPSF7-221	ENST00000543545	TMC4	Q7Z404	712 aa		12.6	□□□□□ -0.39
CPSF7-221	ENST00000543545	POTED	Q86YR6	584 aa		12.6	□□□□□ -0.39
CPSF7-221	ENST00000543545	SIRT2	Q8IXJ6	389 aa		12.6	□□□□□ -0.39
CPSF7-221	ENST00000543545	PUS3	Q9BZE2	481 aa	Known RBP	12.6	□□□□□ -0.39
CPSF7-221	ENST00000543545	COPRS	Q9NQ92	184 aa		12.6	□□□□□ -0.39
CPSF7-221	ENST00000543545	ANKIB1	Q9P2G1	1089 aa		12.6	□□□□□ -0.39
CPSF7-221	ENST00000543545	ANKRD36C	Q5JPF3	1778 aa		12.6	□□□□□ -0.39
CPSF7-221	ENST00000543545	APBB1	O00213	710 aa		12.59	□□□□□ -0.39
CPSF7-221	ENST00000543545	GPR162	Q16538	588 aa		12.59	□□□□□ -0.39
CPSF7-221	ENST00000543545	LRRC24	Q50LG9	513 aa		12.59	□□□□□ -0.39
CPSF7-221	ENST00000543545	METTL24	Q5JXM2	366 aa		12.59	□□□□□ -0.39
CPSF7-221	ENST00000543545	SP8	Q8IXZ3	490 aa		12.59	□□□□□ -0.39
CPSF7-221	ENST00000543545	BCL11A	Q9H165	835 aa		12.59	□□□□□ -0.39
CPSF7-221	ENST00000543545	NSFL1C	Q9UNZ2	370 aa	Known RBP	12.59	□□□□□ -0.39
CPSF7-221	ENST00000543545	ATP6V0A2	Q9Y487	856 aa		12.59	□□□□□ -0.39
CPSF7-221	ENST00000543545	IL15	P40933	162 aa	Predicted RBP	12.58	□□□□□ -0.4
CPSF7-221	ENST00000543545	KCNJ4	P48050	445 aa		12.58	□□□□□ -0.4
CPSF7-221	ENST00000543545	HSP90AB4P	Q58FF6	505 aa		12.58	□□□□□ -0.4
CPSF7-221	ENST00000543545	SOGA3	Q5TF21	947 aa		12.58	□□□□□ -0.4
CPSF7-221	ENST00000543545	CC2D2B	Q6DHV5	1058 aa		12.58	□□□□□ -0.4
CPSF7-221	ENST00000543545	OLFM4	Q6UX06	510 aa		12.58	□□□□□ -0.4
CPSF7-221	ENST00000543545	HELB	Q8NG08	1087 aa	Predicted RBP	12.58	□□□□□ -0.4
CPSF7-221	ENST00000543545	ANKRD2	Q9GZV1	360 aa		12.58	□□□□□ -0.4
CPSF7-221	ENST00000543545	CEP126	Q9P2H0	1117 aa		12.58	□□□□□ -0.4
CPSF7-221	ENST00000543545	MINPP1	Q9UNW1	487 aa		12.58	□□□□□ -0.4
CPSF7-221	ENST00000543545	EXOC6B	Q9Y2D4	811 aa		12.58	□□□□□ -0.4
CPSF7-221	ENST00000543545	AFDN	P55196	1824 aa	Known RBP	12.58	□□□□□ -0.4
CPSF7-221	ENST00000543545	NRXN2	Q9P2S2	1712 aa		12.57	□□□□□ -0.4
CPSF7-221	ENST00000543545	DCAF8L1	A6NGE4	600 aa		12.57	□□□□□ -0.4

Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms