RNA–Protein interactions for RNA: ENST00000542838.5

DDX11-223, Transcript of DEAD/H-box helicase 11, human

APPRIS P1 TSL 1 (best) BASIC

Gene DDX11, Length 3,079 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX11-223	ENST00000542838	SLIT1	O75093	1534 aa		15.29	■□□□□ 0.04
DDX11-223	ENST00000542838	MED23	Q9ULK4	1368 aa		15.29	■□□□□ 0.04
DDX11-223	ENST00000542838	ADGRL3	Q9HAR2	1447 aa		15.29	■□□□□ 0.04
DDX11-223	ENST00000542838	NR1I2	O75469	434 aa		15.29	■□□□□ 0.04
DDX11-223	ENST00000542838	C1orf141	Q5JVX7	400 aa		15.29	■□□□□ 0.04
DDX11-223	ENST00000542838	HMG20B	Q9P0W2	317 aa		15.29	■□□□□ 0.04
DDX11-223	ENST00000542838	ARHGAP23	Q9P227	1491 aa		15.29	■□□□□ 0.04
DDX11-223	ENST00000542838	RBM43	Q6ZSC3	357 aa	Known RBP	15.28	■□□□□ 0.04
DDX11-223	ENST00000542838	PLA2G4D	Q86XP0	818 aa		15.28	■□□□□ 0.04
DDX11-223	ENST00000542838	TDRD7	Q8NHU6	1098 aa	Known RBP	15.28	■□□□□ 0.04
DDX11-223	ENST00000542838	PGBD1	Q96JS3	809 aa		15.28	■□□□□ 0.04
DDX11-223	ENST00000542838	DNAJC25	Q9H1X3	360 aa		15.28	■□□□□ 0.04
DDX11-223	ENST00000542838	PHF8	Q9UPP1	1060 aa		15.28	■□□□□ 0.04
DDX11-223	ENST00000542838	CTIF	O43310	598 aa	Known RBP	15.28	■□□□□ 0.04
DDX11-223	ENST00000542838	ZNF165	P49910	485 aa		15.28	■□□□□ 0.04
DDX11-223	ENST00000542838	DMTN	Q08495	405 aa		15.28	■□□□□ 0.04
DDX11-223	ENST00000542838	KLHDC4	Q8TBB5	520 aa		15.28	■□□□□ 0.04
DDX11-223	ENST00000542838	ANKRD7	Q92527	254 aa		15.28	■□□□□ 0.04
DDX11-223	ENST00000542838	JAK2	O60674	1132 aa		15.27	■□□□□ 0.04
DDX11-223	ENST00000542838	DDX58	O95786	925 aa	Known RBP	15.27	■□□□□ 0.04
DDX11-223	ENST00000542838	ZSCAN20	P17040	1043 aa	Predicted RBP	15.27	■□□□□ 0.04
DDX11-223	ENST00000542838	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	15.27	■□□□□ 0.04
DDX11-223	ENST00000542838	C16orf45	Q96MC5	204 aa	Predicted RBP	15.27	■□□□□ 0.04
DDX11-223	ENST00000542838	TSGA10IP	Q3SY00	556 aa		15.27	■□□□□ 0.03
DDX11-223	ENST00000542838	AMOT	Q4VCS5	1084 aa		15.27	■□□□□ 0.03
DDX11-223	ENST00000542838	ZSCAN25	Q6NSZ9	544 aa		15.27	■□□□□ 0.03
DDX11-223	ENST00000542838	EDC3	Q96F86	508 aa	Known RBP	15.27	■□□□□ 0.03
DDX11-223	ENST00000542838	UTY	O14607	1347 aa		15.27	■□□□□ 0.03
DDX11-223	ENST00000542838	TAF5L	O75529	589 aa		15.26	■□□□□ 0.03
DDX11-223	ENST00000542838	BRF1	Q92994	677 aa		15.26	■□□□□ 0.03
DDX11-223	ENST00000542838	SPDYE4	A6NLX3	237 aa		15.26	■□□□□ 0.03
DDX11-223	ENST00000542838	UTP14C	Q5TAP6	766 aa	Known RBP	15.26	■□□□□ 0.03
DDX11-223	ENST00000542838	CLIP2	Q9UDT6	1046 aa		15.26	■□□□□ 0.03
DDX11-223	ENST00000542838		H3BQV1	296 aa		15.25	■□□□□ 0.03
DDX11-223	ENST00000542838	HSP90B1	P14625	803 aa	Known RBP	15.25	■□□□□ 0.03
DDX11-223	ENST00000542838	REST	Q13127	1097 aa		15.25	■□□□□ 0.03
DDX11-223	ENST00000542838	KRT32	Q14532	448 aa		15.25	■□□□□ 0.03
DDX11-223	ENST00000542838	IFFO2	Q5TF58	517 aa		15.25	■□□□□ 0.03
DDX11-223	ENST00000542838	GTF3C6	Q969F1	213 aa		15.25	■□□□□ 0.03
DDX11-223	ENST00000542838	DDX11	Q96FC9	970 aa		15.25	■□□□□ 0.03
DDX11-223	ENST00000542838	NFAT5	O94916	1531 aa		15.25	■□□□□ 0.03
DDX11-223	ENST00000542838	JCAD	Q9P266	1359 aa		15.25	■□□□□ 0.03
DDX11-223	ENST00000542838	TNNT1	P13805	278 aa		15.25	■□□□□ 0.03
DDX11-223	ENST00000542838	RIC3	Q7Z5B4	369 aa		15.25	■□□□□ 0.03
DDX11-223	ENST00000542838	THEMIS	Q8N1K5	641 aa	Predicted RBP	15.25	■□□□□ 0.03
DDX11-223	ENST00000542838	NEK1	Q96PY6	1258 aa		15.25	■□□□□ 0.03
DDX11-223	ENST00000542838	ZHX1	Q9UKY1	873 aa	Predicted RBP	15.25	■□□□□ 0.03
DDX11-223	ENST00000542838	PXDN	Q92626	1479 aa		15.25	■□□□□ 0.03
DDX11-223	ENST00000542838	U2AF2	P26368	475 aa	Known RBP eCLIP	15.25	■□□□□ 0.03	2e-7	■■■□□ 17.2
DDX11-223	ENST00000542838	DDX21	Q9NR30	783 aa	Known RBP eCLIP	15.25	■□□□□ 0.03
DDX11-223	ENST00000542838	HEG1	Q9ULI3	1381 aa		15.24	■□□□□ 0.03
DDX11-223	ENST00000542838		Q6ZUG5	572 aa		15.24	■□□□□ 0.03
DDX11-223	ENST00000542838	SMTNL1	A8MU46	457 aa		15.24	■□□□□ 0.03
DDX11-223	ENST00000542838	USPL1	Q5W0Q7	1092 aa		15.24	■□□□□ 0.03
DDX11-223	ENST00000542838	KCNH5	Q8NCM2	988 aa		15.24	■□□□□ 0.03
DDX11-223	ENST00000542838	IGKV5-2	P06315	115 aa		15.23	■□□□□ 0.03
DDX11-223	ENST00000542838	CACTIN	Q8WUQ7	758 aa	Known RBP	15.23	■□□□□ 0.03
DDX11-223	ENST00000542838	NCAPD2	Q15021	1401 aa		15.23	■□□□□ 0.03
DDX11-223	ENST00000542838	CEBPZ	Q03701	1054 aa	Known RBP	15.23	■□□□□ 0.03
DDX11-223	ENST00000542838	TPD52L1	Q16890	204 aa	Predicted RBP	15.23	■□□□□ 0.03
DDX11-223	ENST00000542838	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	15.23	■□□□□ 0.03
DDX11-223	ENST00000542838	CFAP45	Q9UL16	551 aa		15.23	■□□□□ 0.03
DDX11-223	ENST00000542838	KIF13A	Q9H1H9	1805 aa		15.23	■□□□□ 0.03
DDX11-223	ENST00000542838	GOLGA6L19	H0YKK7	550 aa		15.23	■□□□□ 0.03
DDX11-223	ENST00000542838	COL15A1	P39059	1388 aa		15.22	■□□□□ 0.03
DDX11-223	ENST00000542838	PSME1	Q06323	249 aa		15.22	■□□□□ 0.03
DDX11-223	ENST00000542838	NCBP1	Q09161	790 aa	Known RBP	15.22	■□□□□ 0.03
DDX11-223	ENST00000542838	NEXN	Q0ZGT2	675 aa		15.22	■□□□□ 0.03
DDX11-223	ENST00000542838	CCDC144B	Q3MJ40	725 aa		15.22	■□□□□ 0.03
DDX11-223	ENST00000542838	CCDC144CP	Q8IYA2	1237 aa		15.22	■□□□□ 0.03
DDX11-223	ENST00000542838	CAVIN2	O95810	425 aa		15.22	■□□□□ 0.03
DDX11-223	ENST00000542838	CCDC129	Q6ZRS4	1044 aa		15.22	■□□□□ 0.03
DDX11-223	ENST00000542838	CDC25B	P30305	580 aa		15.21	■□□□□ 0.03
DDX11-223	ENST00000542838	FGD1	P98174	961 aa		15.21	■□□□□ 0.03
DDX11-223	ENST00000542838	PDIA6	Q15084	440 aa		15.21	■□□□□ 0.03
DDX11-223	ENST00000542838	EPHA10	Q5JZY3	1008 aa		15.21	■□□□□ 0.03
DDX11-223	ENST00000542838	LRRC2	Q9BYS8	371 aa		15.21	■□□□□ 0.03
DDX11-223	ENST00000542838	GTPBP4	Q9BZE4	634 aa	Known RBP	15.21	■□□□□ 0.03
DDX11-223	ENST00000542838	NDUFB9	Q9Y6M9	179 aa		15.21	■□□□□ 0.03
DDX11-223	ENST00000542838	ATP5J	P18859	108 aa		15.21	■□□□□ 0.03
DDX11-223	ENST00000542838		U3KPZ7	1027 aa	Predicted RBP	15.21	■□□□□ 0.03
DDX11-223	ENST00000542838	NEURL1B	A8MQ27	555 aa		15.2	■□□□□ 0.02
DDX11-223	ENST00000542838	MYL6B	P14649	208 aa		15.2	■□□□□ 0.02
DDX11-223	ENST00000542838	FOSB	P53539	338 aa		15.2	■□□□□ 0.02
DDX11-223	ENST00000542838	IQCB1	Q15051	598 aa		15.2	■□□□□ 0.02
DDX11-223	ENST00000542838	SYCP1	Q15431	976 aa		15.2	■□□□□ 0.02
DDX11-223	ENST00000542838	DBNL	Q9UJU6	430 aa	Known RBP	15.2	■□□□□ 0.02
DDX11-223	ENST00000542838	PAXBP1	Q9Y5B6	917 aa		15.2	■□□□□ 0.02
DDX11-223	ENST00000542838	OVOS2	A0A0G2JMS6	1433 aa		15.2	■□□□□ 0.02
DDX11-223	ENST00000542838	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	15.2	■□□□□ 0.02
DDX11-223	ENST00000542838	CHGB	P05060	677 aa		15.2	■□□□□ 0.02
DDX11-223	ENST00000542838	SCRN1	Q12765	414 aa		15.2	■□□□□ 0.02
DDX11-223	ENST00000542838	C11orf57	Q6ZUT1	292 aa	Predicted RBP	15.2	■□□□□ 0.02
DDX11-223	ENST00000542838	CCDC112	Q8NEF3	446 aa		15.2	■□□□□ 0.02
DDX11-223	ENST00000542838	SEC62	Q99442	399 aa	Known RBP	15.2	■□□□□ 0.02
DDX11-223	ENST00000542838	DNAJC2	Q99543	621 aa	Known RBP	15.2	■□□□□ 0.02
DDX11-223	ENST00000542838	MYD88	Q99836	296 aa		15.2	■□□□□ 0.02
DDX11-223	ENST00000542838	CYP21A2	P08686	494 aa		15.2	■□□□□ 0.02
DDX11-223	ENST00000542838	GCKR	Q14397	625 aa		15.2	■□□□□ 0.02
DDX11-223	ENST00000542838	CCAR1	Q8IX12	1150 aa	Known RBP	15.2	■□□□□ 0.02

Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms