RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 CD2APQ9Y5K6 639 aa14.54□□□□□ -0.08
YBX3-213ENST00000542641 LRRFIP2Q9Y608 721 aaKnown RBP14.54□□□□□ -0.08
YBX3-213ENST00000542641 NRXN2Q9P2S2 1712 aa14.54□□□□□ -0.08
YBX3-213ENST00000542641 N4BP2Q86UW6 1770 aaPredicted RBP14.53□□□□□ -0.08
YBX3-213ENST00000542641 RIC1Q4ADV7 1423 aa14.53□□□□□ -0.08
YBX3-213ENST00000542641 C10orf71Q711Q0 1435 aa14.53□□□□□ -0.08
YBX3-213ENST00000542641 CTSWP56202 376 aa14.53□□□□□ -0.08
YBX3-213ENST00000542641 FOXO4P98177 505 aa14.53□□□□□ -0.08
YBX3-213ENST00000542641 EPHA10Q5JZY3 1008 aa14.53□□□□□ -0.08
YBX3-213ENST00000542641 C3orf67Q6ZVT6 689 aa14.53□□□□□ -0.08
YBX3-213ENST00000542641 KAZALD1Q96I82 304 aa14.53□□□□□ -0.08
YBX3-213ENST00000542641 BICC1Q9H694 974 aaKnown RBP14.53□□□□□ -0.08
YBX3-213ENST00000542641 ZBTB40Q9NUA8 1239 aa14.53□□□□□ -0.08
YBX3-213ENST00000542641 KLRG2A4D1S0 409 aaPredicted RBP14.52□□□□□ -0.09
YBX3-213ENST00000542641 H0YIN7 160 aa14.52□□□□□ -0.09
YBX3-213ENST00000542641 SF3B3Q15393 1217 aaKnown RBP14.52□□□□□ -0.09
YBX3-213ENST00000542641 CCDC152Q4G0S7 254 aa14.52□□□□□ -0.09
YBX3-213ENST00000542641 LMBR1LQ6UX01 489 aa14.52□□□□□ -0.09
YBX3-213ENST00000542641 C2CD5Q86YS7 1000 aa14.52□□□□□ -0.09
YBX3-213ENST00000542641 TTLL11Q8NHH1 800 aa14.52□□□□□ -0.09
YBX3-213ENST00000542641 RPGRQ92834 1020 aaKnown RBP14.52□□□□□ -0.09
YBX3-213ENST00000542641 CCDC85AQ96PX6 553 aaPredicted RBP14.52□□□□□ -0.09
YBX3-213ENST00000542641 C1orf115Q9H7X2 142 aa14.52□□□□□ -0.09
YBX3-213ENST00000542641 PDZRN3Q9UPQ7 1066 aa14.52□□□□□ -0.09
YBX3-213ENST00000542641 NEFLP07196 543 aa14.51□□□□□ -0.09
YBX3-213ENST00000542641 CSF1RP07333 972 aa14.51□□□□□ -0.09
YBX3-213ENST00000542641 TGFB2P61812 414 aa14.51□□□□□ -0.09
YBX3-213ENST00000542641 CRY2Q49AN0 593 aa14.51□□□□□ -0.09
YBX3-213ENST00000542641 EXOC6Q8TAG9 804 aa14.51□□□□□ -0.09
YBX3-213ENST00000542641 FHDC1Q9C0D6 1143 aaPredicted RBP14.51□□□□□ -0.09
YBX3-213ENST00000542641 CHMP3Q9Y3E7 222 aa14.51□□□□□ -0.09
YBX3-213ENST00000542641 A0A0G2JLW4 131 aa14.5□□□□□ -0.09
YBX3-213ENST00000542641 SRGNP10124 158 aa14.5□□□□□ -0.09
YBX3-213ENST00000542641 CHRNA5P30532 468 aa14.5□□□□□ -0.09
YBX3-213ENST00000542641 RABL6Q3YEC7 729 aaPredicted RBP14.5□□□□□ -0.09
YBX3-213ENST00000542641 ANKRD44Q8N8A2 993 aa14.5□□□□□ -0.09
YBX3-213ENST00000542641 NPR1P16066 1061 aa14.49□□□□□ -0.09
YBX3-213ENST00000542641 DPEP1P16444 411 aa14.49□□□□□ -0.09
YBX3-213ENST00000542641 DDX46Q7L014 1031 aaKnown RBP14.49□□□□□ -0.09
YBX3-213ENST00000542641 ZNF622Q969S3 477 aaKnown RBP eCLIP14.49□□□□□ -0.092e-15■□□□□ 9.4
YBX3-213ENST00000542641 MASTLQ96GX5 879 aa14.49□□□□□ -0.09
YBX3-213ENST00000542641 RBM17Q96I25 401 aaKnown RBP14.49□□□□□ -0.09
YBX3-213ENST00000542641 GREM2Q9H772 168 aa14.49□□□□□ -0.09
YBX3-213ENST00000542641 SRCAPQ6ZRS2 3230 aa14.48□□□□□ -0.09
YBX3-213ENST00000542641 SPDYE4A6NLX3 237 aa14.48□□□□□ -0.09
YBX3-213ENST00000542641 HOXA10P31260 410 aaPredicted RBP14.48□□□□□ -0.09
YBX3-213ENST00000542641 IFIT5Q13325 482 aaKnown RBP14.48□□□□□ -0.09
YBX3-213ENST00000542641 AAMPQ13685 434 aa14.48□□□□□ -0.09
YBX3-213ENST00000542641 CCDC57Q2TAC2 916 aa14.48□□□□□ -0.09
YBX3-213ENST00000542641 FAM161AQ3B820 660 aa14.48□□□□□ -0.09
YBX3-213ENST00000542641 DDX60Q8IY21 1712 aaKnown RBP14.48□□□□□ -0.09
YBX3-213ENST00000542641 TNRC6CQ9HCJ0 1690 aaKnown RBP14.47□□□□□ -0.09
YBX3-213ENST00000542641 ANKRD18BA2A2Z9 1011 aa14.47□□□□□ -0.09
YBX3-213ENST00000542641 SRGAP3O43295 1099 aa14.47□□□□□ -0.09
YBX3-213ENST00000542641 KCNA3P22001 575 aa14.47□□□□□ -0.09
YBX3-213ENST00000542641 ITGA6P23229 1130 aa14.47□□□□□ -0.09
YBX3-213ENST00000542641 ALDH1B1P30837 517 aa14.47□□□□□ -0.09
YBX3-213ENST00000542641 ATP8B2P98198 1209 aa14.47□□□□□ -0.09
YBX3-213ENST00000542641 STYK1Q6J9G0 422 aa14.47□□□□□ -0.09
YBX3-213ENST00000542641 NLGN2Q8NFZ4 835 aa14.47□□□□□ -0.09
YBX3-213ENST00000542641 SYT17Q9BSW7 474 aa14.47□□□□□ -0.09
YBX3-213ENST00000542641 SEC31BQ9NQW1 1179 aa14.47□□□□□ -0.09
YBX3-213ENST00000542641 RTL9Q8NET4 1388 aa14.47□□□□□ -0.09
YBX3-213ENST00000542641 ANKRD31Q8N7Z5 1873 aa14.46□□□□□ -0.09
YBX3-213ENST00000542641 MTX1Q13505 466 aa14.46□□□□□ -0.09
YBX3-213ENST00000542641 CEP85Q6P2H3 762 aa14.46□□□□□ -0.09
YBX3-213ENST00000542641 RPAP2Q8IXW5 612 aaPredicted RBP14.46□□□□□ -0.09
YBX3-213ENST00000542641 CNKSR1Q969H4 720 aa14.46□□□□□ -0.09
YBX3-213ENST00000542641 CRAMP1Q96RY5 1269 aa14.46□□□□□ -0.09
YBX3-213ENST00000542641 CDC5LQ99459 802 aaKnown RBP14.46□□□□□ -0.09
YBX3-213ENST00000542641 PIM2Q9P1W9 311 aa14.46□□□□□ -0.09
YBX3-213ENST00000542641 LAMB2P55268 1798 aa14.45□□□□□ -0.1
YBX3-213ENST00000542641 PNMA6EA0A0J9YXQ4 647 aa14.45□□□□□ -0.1
YBX3-213ENST00000542641 RPS8P62241 208 aaKnown RBP14.45□□□□□ -0.1
YBX3-213ENST00000542641 GRAPQ13588 217 aa14.45□□□□□ -0.1
YBX3-213ENST00000542641 TAF7LQ5H9L4 462 aa14.45□□□□□ -0.1
YBX3-213ENST00000542641 GRAPLQ8TC17 118 aaPredicted RBP14.45□□□□□ -0.1
YBX3-213ENST00000542641 CELF1Q92879 486 aaKnown RBP14.45□□□□□ -0.1
YBX3-213ENST00000542641 LRP5O75197 1615 aa14.44□□□□□ -0.1
YBX3-213ENST00000542641 KIF13BQ9NQT8 1826 aa14.44□□□□□ -0.1
YBX3-213ENST00000542641 BBOX1O75936 387 aa14.44□□□□□ -0.1
YBX3-213ENST00000542641 IGHMBP2P38935 993 aaKnown RBP14.44□□□□□ -0.1
YBX3-213ENST00000542641 ANKRD18AQ8IVF6 992 aa14.44□□□□□ -0.1
YBX3-213ENST00000542641 TTLL6Q8N841 843 aa14.44□□□□□ -0.1
YBX3-213ENST00000542641 ZNF594Q96JF6 807 aaPredicted RBP14.44□□□□□ -0.1
YBX3-213ENST00000542641 PCDHB15Q9Y5E8 787 aa14.44□□□□□ -0.1
YBX3-213ENST00000542641 HMMRO75330 724 aa14.43□□□□□ -0.1
YBX3-213ENST00000542641 DALRD3Q5D0E6 543 aaKnown RBP14.43□□□□□ -0.1
YBX3-213ENST00000542641 KLHDC4Q8TBB5 520 aa14.43□□□□□ -0.1
YBX3-213ENST00000542641 SSH3Q8TE77 659 aa14.43□□□□□ -0.1
YBX3-213ENST00000542641 MPHOSPH8Q99549 860 aa14.43□□□□□ -0.1
YBX3-213ENST00000542641 WWC3Q9ULE0 1092 aa14.43□□□□□ -0.1
YBX3-213ENST00000542641 PPEF1O14829 653 aaPredicted RBP14.42□□□□□ -0.1
YBX3-213ENST00000542641 RFX5P48382 616 aaPredicted RBP14.42□□□□□ -0.1
YBX3-213ENST00000542641 PTPN12Q05209 780 aaKnown RBP14.42□□□□□ -0.1
YBX3-213ENST00000542641 PRPF40BQ6NWY9 871 aaKnown RBP14.42□□□□□ -0.1
YBX3-213ENST00000542641 LDHAL6AQ6ZMR3 332 aa14.42□□□□□ -0.1
YBX3-213ENST00000542641 SIRT2Q8IXJ6 389 aa14.42□□□□□ -0.1
YBX3-213ENST00000542641 MYH3P11055 1940 aa14.41□□□□□ -0.1
YBX3-213ENST00000542641 TMC4Q7Z404 712 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms