RNA–Protein interactions for RNA: ENST00000542541.6

HOMER3-205, Transcript of homer scaffold protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HOMER3, Length 1,607 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOMER3-205ENST00000542541 CRY2Q49AN0 593 aa28.84■■■□□ 2.21
HOMER3-205ENST00000542541 CD2APQ9Y5K6 639 aa28.84■■■□□ 2.21
HOMER3-205ENST00000542541 C3orf67Q6ZVT6 689 aa28.83■■■□□ 2.21
HOMER3-205ENST00000542541 H0YIN7 160 aa28.83■■■□□ 2.21
HOMER3-205ENST00000542541 CEP85Q6P2H3 762 aa28.83■■■□□ 2.21
HOMER3-205ENST00000542541 RPGRQ92834 1020 aaKnown RBP28.83■■■□□ 2.21
HOMER3-205ENST00000542541 CCDC57Q2TAC2 916 aa28.82■■■□□ 2.2
HOMER3-205ENST00000542541 SRGAP3O43295 1099 aa28.81■■■□□ 2.2
HOMER3-205ENST00000542541 HMMRO75330 724 aa28.81■■■□□ 2.2
HOMER3-205ENST00000542541 TGFB2P61812 414 aa28.81■■■□□ 2.2
HOMER3-205ENST00000542541 IFIT5Q13325 482 aaKnown RBP28.81■■■□□ 2.2
HOMER3-205ENST00000542541 DDX60Q8IY21 1712 aaKnown RBP28.81■■■□□ 2.2
HOMER3-205ENST00000542541 RTL9Q8NET4 1388 aa28.81■■■□□ 2.2
HOMER3-205ENST00000542541 CCDC85AQ96PX6 553 aaPredicted RBP28.81■■■□□ 2.2
HOMER3-205ENST00000542541 PPP1R1BQ9UD71 204 aaPredicted RBP28.81■■■□□ 2.2
HOMER3-205ENST00000542541 LAMB2P55268 1798 aa28.81■■■□□ 2.2
HOMER3-205ENST00000542541 DDX46Q7L014 1031 aaKnown RBP28.8■■■□□ 2.2
HOMER3-205ENST00000542541 C2CD5Q86YS7 1000 aa28.8■■■□□ 2.2
HOMER3-205ENST00000542541 RBM17Q96I25 401 aaKnown RBP28.8■■■□□ 2.2
HOMER3-205ENST00000542541 GREM2Q9H772 168 aa28.8■■■□□ 2.2
HOMER3-205ENST00000542541 ANKRD18BA2A2Z9 1011 aa28.8■■■□□ 2.2
HOMER3-205ENST00000542541 SRGNP10124 158 aa28.8■■■□□ 2.2
HOMER3-205ENST00000542541 NPR1P16066 1061 aa28.8■■■□□ 2.2
HOMER3-205ENST00000542541 FAM161AQ3B820 660 aa28.8■■■□□ 2.2
HOMER3-205ENST00000542541 PCDHB15Q9Y5E8 787 aa28.8■■■□□ 2.2
HOMER3-205ENST00000542541 KIF13BQ9NQT8 1826 aa28.79■■■□□ 2.2
HOMER3-205ENST00000542541 ITGA6P23229 1130 aa28.79■■■□□ 2.2
HOMER3-205ENST00000542541 HOXA10P31260 410 aaPredicted RBP28.79■■■□□ 2.2
HOMER3-205ENST00000542541 KLHL34Q8N239 644 aa28.79■■■□□ 2.2
HOMER3-205ENST00000542541 MASTLQ96GX5 879 aa28.79■■■□□ 2.2
HOMER3-205ENST00000542541 CDC5LQ99459 802 aaKnown RBP28.78■■■□□ 2.2
HOMER3-205ENST00000542541 SSH3Q8TE77 659 aa28.77■■■□□ 2.2
HOMER3-205ENST00000542541 PNMA6EA0A0J9YXQ4 647 aa28.76■■■□□ 2.2
HOMER3-205ENST00000542541 CRAMP1Q96RY5 1269 aa28.76■■■□□ 2.2
HOMER3-205ENST00000542541 ALDH1B1P30837 517 aa28.76■■■□□ 2.19
HOMER3-205ENST00000542541 TAF7LQ5H9L4 462 aa28.76■■■□□ 2.19
HOMER3-205ENST00000542541 STYK1Q6J9G0 422 aa28.76■■■□□ 2.19
HOMER3-205ENST00000542541 TNRC6CQ9HCJ0 1690 aaKnown RBP28.75■■■□□ 2.19
HOMER3-205ENST00000542541 MYH3P11055 1940 aa28.75■■■□□ 2.19
HOMER3-205ENST00000542541 POLA2Q14181 598 aa28.75■■■□□ 2.19
HOMER3-205ENST00000542541 SEC31BQ9NQW1 1179 aa28.75■■■□□ 2.19
HOMER3-205ENST00000542541 ANKRD31Q8N7Z5 1873 aa28.75■■■□□ 2.19
HOMER3-205ENST00000542541 CHRNA5P30532 468 aa28.74■■■□□ 2.19
HOMER3-205ENST00000542541 SIRT2Q8IXJ6 389 aa28.74■■■□□ 2.19
HOMER3-205ENST00000542541 ZNF622Q969S3 477 aaKnown RBP eCLIP28.74■■■□□ 2.19
HOMER3-205ENST00000542541 KIAA1551Q9HCM1 1747 aa28.74■■■□□ 2.19
HOMER3-205ENST00000542541 DPEP1P16444 411 aa28.72■■■□□ 2.19
HOMER3-205ENST00000542541 IGHMBP2P38935 993 aaKnown RBP28.72■■■□□ 2.19
HOMER3-205ENST00000542541 RFX5P48382 616 aaPredicted RBP28.72■■■□□ 2.19
HOMER3-205ENST00000542541 GRAPQ13588 217 aa28.72■■■□□ 2.19
HOMER3-205ENST00000542541 ANKRD18AQ8IVF6 992 aa28.72■■■□□ 2.19
HOMER3-205ENST00000542541 GRAPLQ8TC17 118 aaPredicted RBP28.72■■■□□ 2.19
HOMER3-205ENST00000542541 CNKSR1Q969H4 720 aa28.72■■■□□ 2.19
HOMER3-205ENST00000542541 RWDD1Q9H446 243 aaPredicted RBP28.72■■■□□ 2.19
HOMER3-205ENST00000542541 A0A0G2JLW4 131 aa28.72■■■□□ 2.19
HOMER3-205ENST00000542541 RPS8P62241 208 aaKnown RBP28.72■■■□□ 2.19
HOMER3-205ENST00000542541 COPRSQ9NQ92 184 aa28.72■■■□□ 2.19
HOMER3-205ENST00000542541 BBOX1O75936 387 aa28.71■■■□□ 2.19
HOMER3-205ENST00000542541 HDAC1Q13547 482 aaPredicted RBP28.71■■■□□ 2.19
HOMER3-205ENST00000542541 MPHOSPH8Q99549 860 aa28.71■■■□□ 2.19
HOMER3-205ENST00000542541 FHDC1Q9C0D6 1143 aaPredicted RBP28.71■■■□□ 2.19
HOMER3-205ENST00000542541 PTPN12Q05209 780 aaKnown RBP28.7■■■□□ 2.19
HOMER3-205ENST00000542541 CELF1Q92879 486 aaKnown RBP28.69■■■□□ 2.18
HOMER3-205ENST00000542541 FBXO3Q9UK99 471 aa28.69■■■□□ 2.18
HOMER3-205ENST00000542541 LDHAL6AQ6ZMR3 332 aa28.69■■■□□ 2.18
HOMER3-205ENST00000542541 TMC4Q7Z404 712 aa28.69■■■□□ 2.18
HOMER3-205ENST00000542541 ZNF594Q96JF6 807 aaPredicted RBP28.69■■■□□ 2.18
HOMER3-205ENST00000542541 PIM2Q9P1W9 311 aa28.69■■■□□ 2.18
HOMER3-205ENST00000542541 BSDC1Q9NW68 430 aaPredicted RBP28.68■■■□□ 2.18
HOMER3-205ENST00000542541 SURF6O75683 361 aaKnown RBP28.67■■■□□ 2.18
HOMER3-205ENST00000542541 KCNA3P22001 575 aa28.67■■■□□ 2.18
HOMER3-205ENST00000542541 HSP90AB4PQ58FF6 505 aa28.67■■■□□ 2.18
HOMER3-205ENST00000542541 TTLL6Q8N841 843 aa28.67■■■□□ 2.18
HOMER3-205ENST00000542541 KLHDC4Q8TBB5 520 aa28.67■■■□□ 2.18
HOMER3-205ENST00000542541 PPP4R2Q9NY27 417 aa28.67■■■□□ 2.18
HOMER3-205ENST00000542541 PA2G4Q9UQ80 394 aaKnown RBP28.66■■■□□ 2.18
HOMER3-205ENST00000542541 NOP58Q9Y2X3 529 aaKnown RBP28.66■■■□□ 2.18
HOMER3-205ENST00000542541 G3BP1Q13283 466 aaKnown RBP eCLIP28.65■■■□□ 2.18
HOMER3-205ENST00000542541 SYT17Q9BSW7 474 aa28.65■■■□□ 2.18
HOMER3-205ENST00000542541 CNNM1Q9NRU3 951 aa28.65■■■□□ 2.18
HOMER3-205ENST00000542541 EYA2O00167 538 aa28.65■■■□□ 2.18
HOMER3-205ENST00000542541 CIAO1O76071 339 aa28.65■■■□□ 2.18
HOMER3-205ENST00000542541 TMX4Q9H1E5 349 aaPredicted RBP28.65■■■□□ 2.18
HOMER3-205ENST00000542541 CCDC136Q96JN2 1154 aa28.64■■■□□ 2.18
HOMER3-205ENST00000542541 SIL1Q9H173 461 aa28.64■■■□□ 2.18
HOMER3-205ENST00000542541 COL11A2P13942 1736 aaPredicted RBP28.63■■■□□ 2.17
HOMER3-205ENST00000542541 PPEF1O14829 653 aaPredicted RBP28.63■■■□□ 2.17
HOMER3-205ENST00000542541 OS9Q13438 667 aaPredicted RBP28.63■■■□□ 2.17
HOMER3-205ENST00000542541 PRPF40BQ6NWY9 871 aaKnown RBP28.63■■■□□ 2.17
HOMER3-205ENST00000542541 NLGN2Q8NFZ4 835 aa28.63■■■□□ 2.17
HOMER3-205ENST00000542541 DCTPP1Q9H773 170 aa28.63■■■□□ 2.17
HOMER3-205ENST00000542541 IL15P40933 162 aaPredicted RBP28.62■■■□□ 2.17
HOMER3-205ENST00000542541 DLEC1Q9Y238 1755 aa28.62■■■□□ 2.17
HOMER3-205ENST00000542541 DALRD3Q5D0E6 543 aaKnown RBP28.61■■■□□ 2.17
HOMER3-205ENST00000542541 BRCA1P38398 1863 aaKnown RBP28.61■■■□□ 2.17
HOMER3-205ENST00000542541 IGHDP01880 384 aa28.61■■■□□ 2.17
HOMER3-205ENST00000542541 ERC1Q8IUD2 1116 aa28.61■■■□□ 2.17
HOMER3-205ENST00000542541 SP8Q8IXZ3 490 aa28.61■■■□□ 2.17
HOMER3-205ENST00000542541 GCC1Q96CN9 775 aa28.61■■■□□ 2.17
HOMER3-205ENST00000542541 PUS3Q9BZE2 481 aaKnown RBP28.61■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms