RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 CYP19A1P11511 503 aaPredicted RBP16.59■□□□□ 0.25
RTN3-210ENST00000540798 RUFY3Q7L099 469 aa16.59■□□□□ 0.25
RTN3-210ENST00000540798 MAP3K15Q6ZN16 1313 aa16.58■□□□□ 0.25
RTN3-210ENST00000540798 EYA2O00167 538 aa16.58■□□□□ 0.24
RTN3-210ENST00000540798 KLHL40Q2TBA0 621 aa16.58■□□□□ 0.24
RTN3-210ENST00000540798 VPS53Q5VIR6 699 aa16.58■□□□□ 0.24
RTN3-210ENST00000540798 PRPF40BQ6NWY9 871 aaKnown RBP16.58■□□□□ 0.24
RTN3-210ENST00000540798 GZF1Q9H116 711 aaPredicted RBP16.58■□□□□ 0.24
RTN3-210ENST00000540798 LMBRD1Q9NUN5 540 aa16.58■□□□□ 0.24
RTN3-210ENST00000540798 CREB3L3Q68CJ9 461 aa16.58■□□□□ 0.24
RTN3-210ENST00000540798 FBXO3Q9UK99 471 aa16.58■□□□□ 0.24
RTN3-210ENST00000540798 PALLDQ8WX93 1383 aa16.57■□□□□ 0.24
RTN3-210ENST00000540798 EXOC5O00471 708 aa16.57■□□□□ 0.24
RTN3-210ENST00000540798 ADCK5Q3MIX3 580 aa16.57■□□□□ 0.24
RTN3-210ENST00000540798 KIF6Q6ZMV9 814 aa16.57■□□□□ 0.24
RTN3-210ENST00000540798 LIMCH1Q9UPQ0 1083 aa16.57■□□□□ 0.24
RTN3-210ENST00000540798 GOLGA6L3A6NEY3 463 aa16.57■□□□□ 0.24
RTN3-210ENST00000540798 CASTP20810 708 aaKnown RBP16.57■□□□□ 0.24
RTN3-210ENST00000540798 TSGA10IPQ3SY00 556 aa16.57■□□□□ 0.24
RTN3-210ENST00000540798 USPL1Q5W0Q7 1092 aa16.57■□□□□ 0.24
RTN3-210ENST00000540798 GIGYF2Q6Y7W6 1299 aaKnown RBP16.57■□□□□ 0.24
RTN3-210ENST00000540798 CDCA7Q9BWT1 371 aaPredicted RBP16.57■□□□□ 0.24
RTN3-210ENST00000540798 CDHR2Q9BYE9 1310 aa16.57■□□□□ 0.24
RTN3-210ENST00000540798 CSF1RP07333 972 aa16.56■□□□□ 0.24
RTN3-210ENST00000540798 EDC3Q96F86 508 aaKnown RBP16.56■□□□□ 0.24
RTN3-210ENST00000540798 THRAP3Q9Y2W1 955 aaKnown RBP16.56■□□□□ 0.24
RTN3-210ENST00000540798 SLC27A2O14975 620 aa16.56■□□□□ 0.24
RTN3-210ENST00000540798 MCTP1Q6DN14 999 aa16.56■□□□□ 0.24
RTN3-210ENST00000540798 ZNF589Q86UQ0 364 aaPredicted RBP16.56■□□□□ 0.24
RTN3-210ENST00000540798 ZBTB38Q8NAP3 1195 aaPredicted RBP16.56■□□□□ 0.24
RTN3-210ENST00000540798 SPATA31A1Q5TZJ5 1347 aa16.56■□□□□ 0.24
RTN3-210ENST00000540798 TAF5LO75529 589 aa16.55■□□□□ 0.24
RTN3-210ENST00000540798 LRRC24Q50LG9 513 aa16.55■□□□□ 0.24
RTN3-210ENST00000540798 NOL8Q76FK4 1167 aaKnown RBP16.55■□□□□ 0.24
RTN3-210ENST00000540798 ALDH8A1Q9H2A2 487 aaPredicted RBP16.55■□□□□ 0.24
RTN3-210ENST00000540798 CHMP3Q9Y3E7 222 aa16.55■□□□□ 0.24
RTN3-210ENST00000540798 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.55■□□□□ 0.24
RTN3-210ENST00000540798 JAKMIP1Q96N16 626 aaKnown RBP16.55■□□□□ 0.24
RTN3-210ENST00000540798 ZKSCAN1P17029 563 aaPredicted RBP16.54■□□□□ 0.24
RTN3-210ENST00000540798 SH3TC1Q8TE82 1336 aa16.54■□□□□ 0.24
RTN3-210ENST00000540798 KBTBD3Q8NAB2 608 aa16.54■□□□□ 0.24
RTN3-210ENST00000540798 CYP46A1Q9Y6A2 500 aa16.54■□□□□ 0.24
RTN3-210ENST00000540798 XRCC6P12956 609 aaKnown RBP eCLIP16.54■□□□□ 0.24
RTN3-210ENST00000540798 ZNF594Q96JF6 807 aaPredicted RBP16.54■□□□□ 0.24
RTN3-210ENST00000540798 PDRG1Q9NUG6 133 aa16.54■□□□□ 0.24
RTN3-210ENST00000540798 HMG20BQ9P0W2 317 aa16.54■□□□□ 0.24
RTN3-210ENST00000540798 LRP5O75197 1615 aa16.53■□□□□ 0.24
RTN3-210ENST00000540798 CPA1P15085 419 aa16.53■□□□□ 0.24
RTN3-210ENST00000540798 HSP90AB3PQ58FF7 597 aa16.53■□□□□ 0.24
RTN3-210ENST00000540798 HLFQ16534 295 aa16.53■□□□□ 0.24
RTN3-210ENST00000540798 NLRP10Q86W26 655 aa16.53■□□□□ 0.24
RTN3-210ENST00000540798 FBXO41Q8TF61 875 aa16.53■□□□□ 0.24
RTN3-210ENST00000540798 ZSCAN31Q96LW9 406 aaPredicted RBP16.53■□□□□ 0.24
RTN3-210ENST00000540798 SLIT2O94813 1529 aa16.53■□□□□ 0.24
RTN3-210ENST00000540798 ZNF831Q5JPB2 1677 aa16.53■□□□□ 0.24
RTN3-210ENST00000540798 PUS3Q9BZE2 481 aaKnown RBP16.52■□□□□ 0.24
RTN3-210ENST00000540798 SH2B1Q9NRF2 756 aaPredicted RBP16.52■□□□□ 0.24
RTN3-210ENST00000540798 ERVV-1B6SEH8 477 aa16.52■□□□□ 0.23
RTN3-210ENST00000540798 LARGE1O95461 756 aa16.52■□□□□ 0.23
RTN3-210ENST00000540798 PSMA5P28066 241 aa16.52■□□□□ 0.23
RTN3-210ENST00000540798 IL6STP40189 918 aaPredicted RBP16.52■□□□□ 0.23
RTN3-210ENST00000540798 MRE11P49959 708 aa16.52■□□□□ 0.23
RTN3-210ENST00000540798 RNF20Q5VTR2 975 aa16.52■□□□□ 0.23
RTN3-210ENST00000540798 ZBTB1Q9Y2K1 713 aa16.52■□□□□ 0.23
RTN3-210ENST00000540798 NDUFB9Q9Y6M9 179 aa16.52■□□□□ 0.23
RTN3-210ENST00000540798 LAMA4Q16363 1823 aa16.52■□□□□ 0.23
RTN3-210ENST00000540798 RIC1Q4ADV7 1423 aa16.52■□□□□ 0.23
RTN3-210ENST00000540798 TIMM10P62072 90 aa16.51■□□□□ 0.23
RTN3-210ENST00000540798 FAM89AQ96GI7 184 aa16.51■□□□□ 0.23
RTN3-210ENST00000540798 DNAJC2Q99543 621 aaKnown RBP16.51■□□□□ 0.23
RTN3-210ENST00000540798 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.51■□□□□ 0.23
RTN3-210ENST00000540798 DDX49Q9Y6V7 483 aaKnown RBP16.51■□□□□ 0.23
RTN3-210ENST00000540798 WDR33Q9C0J8 1336 aaKnown RBP16.51■□□□□ 0.23
RTN3-210ENST00000540798 A0A1B0GUL7 405 aa16.51■□□□□ 0.23
RTN3-210ENST00000540798 CCDC57Q2TAC2 916 aa16.51■□□□□ 0.23
RTN3-210ENST00000540798 MCMDC2Q4G0Z9 681 aa16.51■□□□□ 0.23
RTN3-210ENST00000540798 PAG1Q9NWQ8 432 aa16.51■□□□□ 0.23
RTN3-210ENST00000540798 COL5A3P25940 1745 aaPredicted RBP16.5■□□□□ 0.23
RTN3-210ENST00000540798 PRIM1P49642 420 aaKnown RBP16.5■□□□□ 0.23
RTN3-210ENST00000540798 ST3GAL1Q11201 340 aa16.5■□□□□ 0.23
RTN3-210ENST00000540798 ARAP2Q8WZ64 1704 aa16.5■□□□□ 0.23
RTN3-210ENST00000540798 SPATA31A5Q5VU36 1347 aa16.5■□□□□ 0.23
RTN3-210ENST00000540798 SPATA31A7Q8IWB4 1347 aa16.5■□□□□ 0.23
RTN3-210ENST00000540798 DDX46Q7L014 1031 aaKnown RBP16.5■□□□□ 0.23
RTN3-210ENST00000540798 GAS2L3Q86XJ1 694 aa16.5■□□□□ 0.23
RTN3-210ENST00000540798 LAMB2P55268 1798 aa16.5■□□□□ 0.23
RTN3-210ENST00000540798 KCNJ4P48050 445 aa16.5■□□□□ 0.23
RTN3-210ENST00000540798 NEUROD6Q96NK8 337 aa16.5■□□□□ 0.23
RTN3-210ENST00000540798 HELLSQ9NRZ9 838 aa16.5■□□□□ 0.23
RTN3-210ENST00000540798 ZNF330Q9Y3S2 320 aaPredicted RBP16.5■□□□□ 0.23
RTN3-210ENST00000540798 TAF6LQ9Y6J9 622 aa16.5■□□□□ 0.23
RTN3-210ENST00000540798 MYH7P12883 1935 aa16.49■□□□□ 0.23
RTN3-210ENST00000540798 RPS6KB1P23443 525 aa16.49■□□□□ 0.23
RTN3-210ENST00000540798 COL9A3Q14050 684 aaPredicted RBP16.49■□□□□ 0.23
RTN3-210ENST00000540798 GPT2Q8TD30 523 aa16.49■□□□□ 0.23
RTN3-210ENST00000540798 ABCC12Q96J65 1359 aa16.49■□□□□ 0.23
RTN3-210ENST00000540798 CHGBP05060 677 aa16.49■□□□□ 0.23
RTN3-210ENST00000540798 GRPEL1Q9HAV7 217 aa16.49■□□□□ 0.23
RTN3-210ENST00000540798 CEP126Q9P2H0 1117 aa16.49■□□□□ 0.23
RTN3-210ENST00000540798 U3KPZ7 1027 aaPredicted RBP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms