RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 BRPF1P55201 1214 aaPredicted RBP9.65□□□□□ -0.86
YBX3-209ENST00000540747 SUPT20HQ8NEM7 779 aa9.65□□□□□ -0.86
YBX3-209ENST00000540747 TRPM4Q8TD43 1214 aa9.65□□□□□ -0.86
YBX3-209ENST00000540747 COL4A1P02462 1669 aa9.64□□□□□ -0.87
YBX3-209ENST00000540747 SHTN1A0MZ66 631 aa9.64□□□□□ -0.87
YBX3-209ENST00000540747 ANXA1P04083 346 aa9.64□□□□□ -0.87
YBX3-209ENST00000540747 HCLS1P14317 486 aaPredicted RBP9.64□□□□□ -0.87
YBX3-209ENST00000540747 GRAPQ13588 217 aa9.64□□□□□ -0.87
YBX3-209ENST00000540747 CIAPIN1Q6FI81 312 aa9.64□□□□□ -0.87
YBX3-209ENST00000540747 DPP8Q6V1X1 898 aaPredicted RBP9.64□□□□□ -0.87
YBX3-209ENST00000540747 GRAPLQ8TC17 118 aaPredicted RBP9.64□□□□□ -0.87
YBX3-209ENST00000540747 TSPYL4Q9UJ04 414 aa9.64□□□□□ -0.87
YBX3-209ENST00000540747 TSKSQ9UJT2 592 aa9.64□□□□□ -0.87
YBX3-209ENST00000540747 TCIRG1Q13488 830 aa9.63□□□□□ -0.87
YBX3-209ENST00000540747 MPNDQ8N594 471 aa9.63□□□□□ -0.87
YBX3-209ENST00000540747 ZIC5Q96T25 663 aa9.63□□□□□ -0.87
YBX3-209ENST00000540747 PDE4DIPQ5VU43 2346 aa9.63□□□□□ -0.87
YBX3-209ENST00000540747 DDX60Q8IY21 1712 aaKnown RBP9.62□□□□□ -0.87
YBX3-209ENST00000540747 SH3TC1Q8TE82 1336 aa9.62□□□□□ -0.87
YBX3-209ENST00000540747 RAD17O75943 681 aa9.62□□□□□ -0.87
YBX3-209ENST00000540747 NEFMP07197 916 aa9.62□□□□□ -0.87
YBX3-209ENST00000540747 TNIP1Q15025 636 aa9.62□□□□□ -0.87
YBX3-209ENST00000540747 HSP90AB3PQ58FF7 597 aa9.62□□□□□ -0.87
YBX3-209ENST00000540747 PAXIP1Q6ZW49 1069 aaPredicted RBP9.62□□□□□ -0.87
YBX3-209ENST00000540747 CDC37L1Q7L3B6 337 aa9.62□□□□□ -0.87
YBX3-209ENST00000540747 COPS6Q7L5N1 327 aa9.62□□□□□ -0.87
YBX3-209ENST00000540747 TMC4Q7Z404 712 aa9.62□□□□□ -0.87
YBX3-209ENST00000540747 XAGE3Q8WTP9 111 aa9.62□□□□□ -0.87
YBX3-209ENST00000540747 DPF2Q92785 391 aa9.62□□□□□ -0.87
YBX3-209ENST00000540747 BEGAINQ9BUH8 593 aa9.62□□□□□ -0.87
YBX3-209ENST00000540747 MCOLN1Q9GZU1 580 aa9.62□□□□□ -0.87
YBX3-209ENST00000540747 CNOT7Q9UIV1 285 aaKnown RBP9.62□□□□□ -0.87
YBX3-209ENST00000540747 RTL9Q8NET4 1388 aa9.62□□□□□ -0.87
YBX3-209ENST00000540747 TAF1P21675 1872 aa9.62□□□□□ -0.87
YBX3-209ENST00000540747 MAPK8IP3Q9UPT6 1336 aa9.61□□□□□ -0.87
YBX3-209ENST00000540747 FAM155AB1AL88 458 aaPredicted RBP9.61□□□□□ -0.87
YBX3-209ENST00000540747 CHL1O00533 1208 aa9.61□□□□□ -0.87
YBX3-209ENST00000540747 EGFRP00533 1210 aa9.61□□□□□ -0.87
YBX3-209ENST00000540747 EIF2S2P20042 333 aaKnown RBP9.61□□□□□ -0.87
YBX3-209ENST00000540747 MLLT1Q03111 559 aaPredicted RBP9.61□□□□□ -0.87
YBX3-209ENST00000540747 GRM1Q13255 1194 aa9.61□□□□□ -0.87
YBX3-209ENST00000540747 SF3B3Q15393 1217 aaKnown RBP9.61□□□□□ -0.87
YBX3-209ENST00000540747 DLK2Q6UY11 383 aa9.61□□□□□ -0.87
YBX3-209ENST00000540747 DDX46Q7L014 1031 aaKnown RBP9.61□□□□□ -0.87
YBX3-209ENST00000540747 MICALL2Q8IY33 904 aa9.61□□□□□ -0.87
YBX3-209ENST00000540747 ISCA1Q9BUE6 129 aa9.61□□□□□ -0.87
YBX3-209ENST00000540747 PNNQ9H307 717 aaKnown RBP9.61□□□□□ -0.87
YBX3-209ENST00000540747 ZNF609O15014 1411 aa9.61□□□□□ -0.87
YBX3-209ENST00000540747 CASP8AP2Q9UKL3 1982 aa9.61□□□□□ -0.87
YBX3-209ENST00000540747 CCDC85CA6NKD9 419 aa9.6□□□□□ -0.87
YBX3-209ENST00000540747 PSMD14O00487 310 aa9.6□□□□□ -0.87
YBX3-209ENST00000540747 TMPOP42166 694 aaKnown RBP9.6□□□□□ -0.87
YBX3-209ENST00000540747 RIPK4P57078 832 aa9.6□□□□□ -0.87
YBX3-209ENST00000540747 NOGQ13253 232 aa9.6□□□□□ -0.87
YBX3-209ENST00000540747 KRT24Q2M2I5 525 aa9.6□□□□□ -0.87
YBX3-209ENST00000540747 CELF1Q92879 486 aaKnown RBP9.6□□□□□ -0.87
YBX3-209ENST00000540747 BCL2L13Q9BXK5 485 aa9.6□□□□□ -0.87
YBX3-209ENST00000540747 TMX4Q9H1E5 349 aaPredicted RBP9.6□□□□□ -0.87
YBX3-209ENST00000540747 TRMT112Q9UI30 125 aaKnown RBP9.6□□□□□ -0.87
YBX3-209ENST00000540747 ZBTB12Q9Y330 459 aaPredicted RBP9.6□□□□□ -0.87
YBX3-209ENST00000540747 RPS12P25398 132 aaKnown RBP9.59□□□□□ -0.87
YBX3-209ENST00000540747 HUNKP57058 714 aa9.59□□□□□ -0.87
YBX3-209ENST00000540747 TRIM28Q13263 835 aaKnown RBP9.59□□□□□ -0.87
YBX3-209ENST00000540747 SAMD7Q7Z3H4 446 aa9.59□□□□□ -0.87
YBX3-209ENST00000540747 USP48Q86UV5 1035 aa9.59□□□□□ -0.87
YBX3-209ENST00000540747 POLLQ9UGP5 575 aa9.59□□□□□ -0.87
YBX3-209ENST00000540747 SCN9AQ15858 1988 aa9.59□□□□□ -0.87
YBX3-209ENST00000540747 H7C1D1 291 aa9.58□□□□□ -0.88
YBX3-209ENST00000540747 HOXB7P09629 217 aa9.58□□□□□ -0.88
YBX3-209ENST00000540747 GPSM2P81274 684 aa9.58□□□□□ -0.88
YBX3-209ENST00000540747 LMOD3Q0VAK6 560 aa9.58□□□□□ -0.88
YBX3-209ENST00000540747 AIMP1Q12904 312 aaKnown RBP9.58□□□□□ -0.88
YBX3-209ENST00000540747 PLBD2Q8NHP8 589 aa9.58□□□□□ -0.88
YBX3-209ENST00000540747 ZNF408Q9H9D4 720 aa9.58□□□□□ -0.88
YBX3-209ENST00000540747 DBNDD1Q9H9R9 158 aa9.58□□□□□ -0.88
YBX3-209ENST00000540747 KCNQ5Q9NR82 932 aa9.58□□□□□ -0.88
YBX3-209ENST00000540747 SAGE1Q9NXZ1 904 aa9.58□□□□□ -0.88
YBX3-209ENST00000540747 CHPF2Q9P2E5 772 aa9.58□□□□□ -0.88
YBX3-209ENST00000540747 TRIM35Q9UPQ4 493 aa9.58□□□□□ -0.88
YBX3-209ENST00000540747 ADM5C9JUS6 153 aa9.57□□□□□ -0.88
YBX3-209ENST00000540747 VIL1P09327 827 aaKnown RBP9.57□□□□□ -0.88
YBX3-209ENST00000540747 DGKZQ13574 1117 aa9.57□□□□□ -0.88
YBX3-209ENST00000540747 WASHC4Q2M389 1173 aa9.57□□□□□ -0.88
YBX3-209ENST00000540747 TBC1D10BQ4KMP7 808 aaPredicted RBP9.57□□□□□ -0.88
YBX3-209ENST00000540747 RGMBQ6NW40 437 aa9.57□□□□□ -0.88
YBX3-209ENST00000540747 KRT26Q7Z3Y9 468 aa9.57□□□□□ -0.88
YBX3-209ENST00000540747 TBC1D16Q8TBP0 767 aa9.57□□□□□ -0.88
YBX3-209ENST00000540747 NECTIN2Q92692 538 aa9.57□□□□□ -0.88
YBX3-209ENST00000540747 FAM89AQ96GI7 184 aa9.57□□□□□ -0.88
YBX3-209ENST00000540747 GBA2Q9HCG7 927 aaPredicted RBP9.57□□□□□ -0.88
YBX3-209ENST00000540747 PODXL2Q9NZ53 605 aa9.57□□□□□ -0.88
YBX3-209ENST00000540747 ECE2O60344 883 aa9.56□□□□□ -0.88
YBX3-209ENST00000540747 SLC10A3P09131 477 aa9.56□□□□□ -0.88
YBX3-209ENST00000540747 ZNF280AP59817 542 aaPredicted RBP9.56□□□□□ -0.88
YBX3-209ENST00000540747 ANKRD13DQ6ZTN6 518 aa9.56□□□□□ -0.88
YBX3-209ENST00000540747 NSFL1CQ9UNZ2 370 aaKnown RBP9.56□□□□□ -0.88
YBX3-209ENST00000540747 HTTP42858 3142 aa9.56□□□□□ -0.88
YBX3-209ENST00000540747 ASTN2O75129 1339 aaPredicted RBP9.56□□□□□ -0.88
YBX3-209ENST00000540747 POLR2AP24928 1970 aaKnown RBP9.55□□□□□ -0.88
YBX3-209ENST00000540747 ATP5J2-PTCD1G3V325 749 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms