RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 MAP4K1Q92918 833 aa20.22■□□□□ 0.83
USP28-208ENST00000540438 TTLL5Q6EMB2 1281 aa20.22■□□□□ 0.83
USP28-208ENST00000540438 HCLS1P14317 486 aaPredicted RBP20.21■□□□□ 0.83
USP28-208ENST00000540438 PTMSP20962 102 aa20.21■□□□□ 0.83
USP28-208ENST00000540438 F13A1P00488 732 aa20.21■□□□□ 0.83
USP28-208ENST00000540438 CCT2P78371 535 aaKnown RBP20.21■□□□□ 0.83
USP28-208ENST00000540438 GUCY1B3Q02153 619 aa20.21■□□□□ 0.83
USP28-208ENST00000540438 LRSAM1Q6UWE0 723 aa20.21■□□□□ 0.83
USP28-208ENST00000540438 DNAJC10Q8IXB1 793 aa20.21■□□□□ 0.83
USP28-208ENST00000540438 ZSWIM6Q9HCJ5 1215 aa20.21■□□□□ 0.83
USP28-208ENST00000540438 SLAIN2Q9P270 581 aa20.21■□□□□ 0.83
USP28-208ENST00000540438 SNAP23O00161 211 aa20.21■□□□□ 0.83
USP28-208ENST00000540438 SLIT3O75094 1523 aa20.2■□□□□ 0.82
USP28-208ENST00000540438 ADORA1P30542 326 aa20.2■□□□□ 0.82
USP28-208ENST00000540438 GPHNQ9NQX3 736 aaPredicted RBP20.2■□□□□ 0.82
USP28-208ENST00000540438 TAF5LO75529 589 aa20.2■□□□□ 0.82
USP28-208ENST00000540438 MTMR6Q9Y217 621 aa20.2■□□□□ 0.82
USP28-208ENST00000540438 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.2■□□□□ 0.82
USP28-208ENST00000540438 LMO7Q8WWI1 1683 aa20.2■□□□□ 0.82
USP28-208ENST00000540438 PLBD2Q8NHP8 589 aa20.19■□□□□ 0.82
USP28-208ENST00000540438 FOXO4P98177 505 aa20.19■□□□□ 0.82
USP28-208ENST00000540438 NCOA5Q9HCD5 579 aaKnown RBP20.19■□□□□ 0.82
USP28-208ENST00000540438 USP42Q9H9J4 1324 aaKnown RBP20.19■□□□□ 0.82
USP28-208ENST00000540438 BRF1Q92994 677 aa20.19■□□□□ 0.82
USP28-208ENST00000540438 USP25Q9UHP3 1055 aa20.19■□□□□ 0.82
USP28-208ENST00000540438 STK11IPQ8N1F8 1099 aa20.18■□□□□ 0.82
USP28-208ENST00000540438 NCAPD2Q15021 1401 aa20.18■□□□□ 0.82
USP28-208ENST00000540438 UTYO14607 1347 aa20.18■□□□□ 0.82
USP28-208ENST00000540438 C5P01031 1676 aa20.18■□□□□ 0.82
USP28-208ENST00000540438 PTMAP06454 111 aaKnown RBP20.18■□□□□ 0.82
USP28-208ENST00000540438 CYP21A2P08686 494 aa20.18■□□□□ 0.82
USP28-208ENST00000540438 TOB2Q14106 344 aaPredicted RBP20.18■□□□□ 0.82
USP28-208ENST00000540438 GORABQ5T7V8 394 aa20.18■□□□□ 0.82
USP28-208ENST00000540438 CWC25Q9NXE8 425 aaPredicted RBP20.18■□□□□ 0.82
USP28-208ENST00000540438 CCDC173Q0VFZ6 552 aa20.17■□□□□ 0.82
USP28-208ENST00000540438 Q6ZUG5 572 aa20.17■□□□□ 0.82
USP28-208ENST00000540438 C17orf53Q8N3J3 647 aaPredicted RBP20.17■□□□□ 0.82
USP28-208ENST00000540438 HELBQ8NG08 1087 aaPredicted RBP20.17■□□□□ 0.82
USP28-208ENST00000540438 FTOQ9C0B1 505 aaKnown RBP eCLIP20.17■□□□□ 0.82
USP28-208ENST00000540438 COPRSQ9NQ92 184 aa20.17■□□□□ 0.82
USP28-208ENST00000540438 TUBGCP6Q96RT7 1819 aa20.17■□□□□ 0.82
USP28-208ENST00000540438 A0A087WWV3 80 aa20.17■□□□□ 0.82
USP28-208ENST00000540438 ATG9AQ7Z3C6 839 aa20.17■□□□□ 0.82
USP28-208ENST00000540438 FBXW7Q969H0 707 aa20.17■□□□□ 0.82
USP28-208ENST00000540438 BTG4Q9NY30 223 aa20.17■□□□□ 0.82
USP28-208ENST00000540438 IL2RBP14784 551 aa20.16■□□□□ 0.82
USP28-208ENST00000540438 CLCN1P35523 988 aa20.16■□□□□ 0.82
USP28-208ENST00000540438 CKAP2LQ8IYA6 745 aa20.16■□□□□ 0.82
USP28-208ENST00000540438 ARID3AQ99856 593 aa20.16■□□□□ 0.82
USP28-208ENST00000540438 TSPY26PQ9H489 355 aa20.16■□□□□ 0.82
USP28-208ENST00000540438 HDAC5Q9UQL6 1122 aa20.16■□□□□ 0.82
USP28-208ENST00000540438 STOX1Q6ZVD7 989 aa20.16■□□□□ 0.82
USP28-208ENST00000540438 TBC1D2BQ9UPU7 963 aa20.16■□□□□ 0.82
USP28-208ENST00000540438 CASP7P55210 303 aa20.16■□□□□ 0.82
USP28-208ENST00000540438 SCARF1Q14162 830 aa20.16■□□□□ 0.82
USP28-208ENST00000540438 HLFQ16534 295 aa20.16■□□□□ 0.82
USP28-208ENST00000540438 TAF7LQ5H9L4 462 aa20.16■□□□□ 0.82
USP28-208ENST00000540438 TNS3Q68CZ2 1445 aa20.15■□□□□ 0.82
USP28-208ENST00000540438 A0A1B0GUL7 405 aa20.15■□□□□ 0.82
USP28-208ENST00000540438 WASHC4Q2M389 1173 aa20.15■□□□□ 0.82
USP28-208ENST00000540438 ZNF609O15014 1411 aa20.15■□□□□ 0.82
USP28-208ENST00000540438 ADAMTSL3P82987 1691 aa20.15■□□□□ 0.82
USP28-208ENST00000540438 APOBRQ0VD83 1088 aa20.15■□□□□ 0.82
USP28-208ENST00000540438 MBD3O95983 291 aa20.14■□□□□ 0.82
USP28-208ENST00000540438 MSNP26038 577 aaKnown RBP20.14■□□□□ 0.82
USP28-208ENST00000540438 SMIM5Q71RC9 77 aa20.14■□□□□ 0.82
USP28-208ENST00000540438 TMOD3Q9NYL9 352 aa20.14■□□□□ 0.82
USP28-208ENST00000540438 RPS6KB1P23443 525 aa20.14■□□□□ 0.81
USP28-208ENST00000540438 WDR17Q8IZU2 1322 aa20.14■□□□□ 0.81
USP28-208ENST00000540438 IFIT1P09914 478 aaKnown RBP20.13■□□□□ 0.81
USP28-208ENST00000540438 PIGBQ92521 554 aa20.13■□□□□ 0.81
USP28-208ENST00000540438 TRPM3Q9HCF6 1732 aaPredicted RBP20.13■□□□□ 0.81
USP28-208ENST00000540438 ATP5JP18859 108 aa20.13■□□□□ 0.81
USP28-208ENST00000540438 PAG1Q9NWQ8 432 aa20.13■□□□□ 0.81
USP28-208ENST00000540438 OTUD7BQ6GQQ9 843 aa20.13■□□□□ 0.81
USP28-208ENST00000540438 TTC6Q86TZ1 520 aa20.13■□□□□ 0.81
USP28-208ENST00000540438 LIG1P18858 919 aa20.12■□□□□ 0.81
USP28-208ENST00000540438 KCNQ4P56696 695 aa20.12■□□□□ 0.81
USP28-208ENST00000540438 RNF20Q5VTR2 975 aa20.12■□□□□ 0.81
USP28-208ENST00000540438 ERCC4Q92889 916 aaPredicted RBP20.12■□□□□ 0.81
USP28-208ENST00000540438 ACSBG1Q96GR2 724 aa20.12■□□□□ 0.81
USP28-208ENST00000540438 NEK1Q96PY6 1258 aa20.12■□□□□ 0.81
USP28-208ENST00000540438 DENND2AQ9ULE3 1009 aa20.12■□□□□ 0.81
USP28-208ENST00000540438 GJB4Q9NTQ9 266 aa20.12■□□□□ 0.81
USP28-208ENST00000540438 CAMTA1Q9Y6Y1 1673 aa20.12■□□□□ 0.81
USP28-208ENST00000540438 ADAMTS2O95450 1211 aa20.11■□□□□ 0.81
USP28-208ENST00000540438 ISY1Q9ULR0 285 aaKnown RBP20.11■□□□□ 0.81
USP28-208ENST00000540438 STRCP1A6NGW2 1772 aa20.11■□□□□ 0.81
USP28-208ENST00000540438 H7C1W4 665 aa20.11■□□□□ 0.81
USP28-208ENST00000540438 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.11■□□□□ 0.812e-6■■■■□ 19.4
USP28-208ENST00000540438 PCDH11XQ9BZA7 1347 aa20.11■□□□□ 0.81
USP28-208ENST00000540438 PCDH11YQ9BZA8 1340 aa20.11■□□□□ 0.81
USP28-208ENST00000540438 CCDC57Q2TAC2 916 aa20.11■□□□□ 0.81
USP28-208ENST00000540438 MCMDC2Q4G0Z9 681 aa20.11■□□□□ 0.81
USP28-208ENST00000540438 PPP1R9BQ96SB3 815 aa20.11■□□□□ 0.81
USP28-208ENST00000540438 RABL6Q3YEC7 729 aaPredicted RBP20.1■□□□□ 0.81
USP28-208ENST00000540438 SPC24Q8NBT2 197 aa20.1■□□□□ 0.81
USP28-208ENST00000540438 PSMA5P28066 241 aa20.1■□□□□ 0.81
USP28-208ENST00000540438 BCL11BQ9C0K0 894 aaPredicted RBP20.1■□□□□ 0.81
USP28-208ENST00000540438 M0R2C6 588 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms