RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 CSRNP1Q96S65 589 aa16.46■□□□□ 0.23
CLSTN3-208ENST00000538933 MAP3K15Q6ZN16 1313 aa16.45■□□□□ 0.22
CLSTN3-208ENST00000538933 CENPFP49454 3210 aa16.45■□□□□ 0.22
CLSTN3-208ENST00000538933 YDJCA8MPS7 323 aa16.45■□□□□ 0.22
CLSTN3-208ENST00000538933 NTSR2O95665 410 aa16.45■□□□□ 0.22
CLSTN3-208ENST00000538933 GPTP24298 496 aa16.45■□□□□ 0.22
CLSTN3-208ENST00000538933 KIAA2012Q0VF49 1180 aa16.45■□□□□ 0.22
CLSTN3-208ENST00000538933 MCM10Q7L590 875 aa16.45■□□□□ 0.22
CLSTN3-208ENST00000538933 CFAP53Q96M91 514 aa16.45■□□□□ 0.22
CLSTN3-208ENST00000538933 BCL2L13Q9BXK5 485 aa16.45■□□□□ 0.22
CLSTN3-208ENST00000538933 RSPH6AQ9H0K4 717 aa16.45■□□□□ 0.22
CLSTN3-208ENST00000538933 HPS5Q9UPZ3 1129 aa16.45■□□□□ 0.22
CLSTN3-208ENST00000538933 LAMB2P55268 1798 aa16.45■□□□□ 0.22
CLSTN3-208ENST00000538933 TAF1P21675 1872 aa16.44■□□□□ 0.22
CLSTN3-208ENST00000538933 CCER2I3L3R5 266 aa16.44■□□□□ 0.22
CLSTN3-208ENST00000538933 TNIP1Q15025 636 aa16.44■□□□□ 0.22
CLSTN3-208ENST00000538933 SLC10A5Q5PT55 438 aa16.44■□□□□ 0.22
CLSTN3-208ENST00000538933 SUPT20HQ8NEM7 779 aa16.44■□□□□ 0.22
CLSTN3-208ENST00000538933 GBA2Q9HCG7 927 aaPredicted RBP16.44■□□□□ 0.22
CLSTN3-208ENST00000538933 MRS2Q9HD23 443 aa16.44■□□□□ 0.22
CLSTN3-208ENST00000538933 ANKRD36CQ5JPF3 1778 aa16.43■□□□□ 0.22
CLSTN3-208ENST00000538933 EGFRP00533 1210 aa16.43■□□□□ 0.22
CLSTN3-208ENST00000538933 PRKAR2BP31323 418 aa16.43■□□□□ 0.22
CLSTN3-208ENST00000538933 ZNF157P51786 506 aaPredicted RBP16.43■□□□□ 0.22
CLSTN3-208ENST00000538933 NGEFQ8N5V2 710 aa16.43■□□□□ 0.22
CLSTN3-208ENST00000538933 ABCC4O15439 1325 aa16.43■□□□□ 0.22
CLSTN3-208ENST00000538933 H7C1D1 291 aa16.42■□□□□ 0.22
CLSTN3-208ENST00000538933 SLC10A3P09131 477 aa16.42■□□□□ 0.22
CLSTN3-208ENST00000538933 DCTN1Q14203 1278 aa16.42■□□□□ 0.22
CLSTN3-208ENST00000538933 SAMD7Q7Z3H4 446 aa16.42■□□□□ 0.22
CLSTN3-208ENST00000538933 SP8Q8IXZ3 490 aa16.42■□□□□ 0.22
CLSTN3-208ENST00000538933 MICALL2Q8IY33 904 aa16.42■□□□□ 0.22
CLSTN3-208ENST00000538933 DUOX1Q9NRD9 1551 aa16.42■□□□□ 0.22
CLSTN3-208ENST00000538933 DPP8Q6V1X1 898 aaPredicted RBP16.41■□□□□ 0.22
CLSTN3-208ENST00000538933 KRT26Q7Z3Y9 468 aa16.41■□□□□ 0.22
CLSTN3-208ENST00000538933 C2orf69Q8N8R5 385 aa16.41■□□□□ 0.22
CLSTN3-208ENST00000538933 DPF2Q92785 391 aa16.41■□□□□ 0.22
CLSTN3-208ENST00000538933 NLRP3Q96P20 1036 aa16.41■□□□□ 0.22
CLSTN3-208ENST00000538933 MIS18AQ9NYP9 233 aa16.41■□□□□ 0.22
CLSTN3-208ENST00000538933 ZBTB12Q9Y330 459 aaPredicted RBP16.41■□□□□ 0.22
CLSTN3-208ENST00000538933 ADM5C9JUS6 153 aa16.4■□□□□ 0.22
CLSTN3-208ENST00000538933 BBOX1O75936 387 aa16.4■□□□□ 0.22
CLSTN3-208ENST00000538933 MPNDQ8N594 471 aa16.4■□□□□ 0.22
CLSTN3-208ENST00000538933 ZBTB3Q9H5J0 574 aa16.4■□□□□ 0.22
CLSTN3-208ENST00000538933 KDM3BQ7LBC6 1761 aa16.4■□□□□ 0.22
CLSTN3-208ENST00000538933 TAF7Q15545 349 aaPredicted RBP16.39■□□□□ 0.21
CLSTN3-208ENST00000538933 GIGYF2Q6Y7W6 1299 aaKnown RBP16.39■□□□□ 0.21
CLSTN3-208ENST00000538933 TMX4Q9H1E5 349 aaPredicted RBP16.39■□□□□ 0.21
CLSTN3-208ENST00000538933 RRP7AQ9Y3A4 280 aaKnown RBP16.39■□□□□ 0.21
CLSTN3-208ENST00000538933 PKN2Q16513 984 aaKnown RBP16.38■□□□□ 0.21
CLSTN3-208ENST00000538933 TBC1D10BQ4KMP7 808 aaPredicted RBP16.38■□□□□ 0.21
CLSTN3-208ENST00000538933 HABP4Q5JVS0 413 aaKnown RBP16.38■□□□□ 0.21
CLSTN3-208ENST00000538933 KIF6Q6ZMV9 814 aa16.38■□□□□ 0.21
CLSTN3-208ENST00000538933 RTF1Q92541 710 aaKnown RBP16.38■□□□□ 0.21
CLSTN3-208ENST00000538933 GCC1Q96CN9 775 aa16.38■□□□□ 0.21
CLSTN3-208ENST00000538933 SZT2Q5T011 3432 aa16.38■□□□□ 0.21
CLSTN3-208ENST00000538933 LRRC37AA6NMS7 1700 aa16.38■□□□□ 0.21
CLSTN3-208ENST00000538933 BRCA2P51587 3418 aa16.38■□□□□ 0.21
CLSTN3-208ENST00000538933 PSMD14O00487 310 aa16.37■□□□□ 0.21
CLSTN3-208ENST00000538933 HTATSF1O43719 755 aaKnown RBP16.37■□□□□ 0.21
CLSTN3-208ENST00000538933 PPP1R42Q7Z4L9 355 aa16.37■□□□□ 0.21
CLSTN3-208ENST00000538933 REM2Q8IYK8 340 aaPredicted RBP16.37■□□□□ 0.21
CLSTN3-208ENST00000538933 MYL6BP14649 208 aa16.36■□□□□ 0.21
CLSTN3-208ENST00000538933 WDR43Q15061 677 aaKnown RBP eCLIP16.36■□□□□ 0.21
CLSTN3-208ENST00000538933 PARP10Q53GL7 1025 aa16.36■□□□□ 0.21
CLSTN3-208ENST00000538933 RASAL3Q86YV0 1011 aa16.36■□□□□ 0.21
CLSTN3-208ENST00000538933 DLG5Q8TDM6 1919 aa16.35■□□□□ 0.21
CLSTN3-208ENST00000538933 LRP10Q7Z4F1 713 aa16.35■□□□□ 0.21
CLSTN3-208ENST00000538933 ZNF296Q8WUU4 475 aaPredicted RBP16.35■□□□□ 0.21
CLSTN3-208ENST00000538933 DCPSQ96C86 337 aaKnown RBP16.35■□□□□ 0.21
CLSTN3-208ENST00000538933 KCNQ5Q9NR82 932 aa16.35■□□□□ 0.21
CLSTN3-208ENST00000538933 NUDCQ9Y266 331 aa16.35■□□□□ 0.21
CLSTN3-208ENST00000538933 A0A0C4DFX4 3053 aa16.35■□□□□ 0.21
CLSTN3-208ENST00000538933 SCN9AQ15858 1988 aa16.35■□□□□ 0.21
CLSTN3-208ENST00000538933 EIF4A1P60842 406 aaKnown RBP16.34■□□□□ 0.21
CLSTN3-208ENST00000538933 UTP14AQ9BVJ6 771 aaKnown RBP16.34■□□□□ 0.21
CLSTN3-208ENST00000538933 ASTN2O75129 1339 aaPredicted RBP16.34■□□□□ 0.21
CLSTN3-208ENST00000538933 CCDC184Q52MB2 194 aa16.33■□□□□ 0.2
CLSTN3-208ENST00000538933 RBM26Q5T8P6 1007 aaKnown RBP16.33■□□□□ 0.2
CLSTN3-208ENST00000538933 FAM9BQ8IZU0 186 aa16.33■□□□□ 0.2
CLSTN3-208ENST00000538933 CDCA5Q96FF9 252 aa16.33■□□□□ 0.2
CLSTN3-208ENST00000538933 RTL9Q8NET4 1388 aa16.33■□□□□ 0.2
CLSTN3-208ENST00000538933 TBC1D8O95759 1140 aa16.32■□□□□ 0.2
CLSTN3-208ENST00000538933 HCLS1P14317 486 aaPredicted RBP16.32■□□□□ 0.2
CLSTN3-208ENST00000538933 RPS12P25398 132 aaKnown RBP16.32■□□□□ 0.2
CLSTN3-208ENST00000538933 GRAPQ13588 217 aa16.32■□□□□ 0.2
CLSTN3-208ENST00000538933 NOM1Q5C9Z4 860 aaKnown RBP16.32■□□□□ 0.2
CLSTN3-208ENST00000538933 GRAPLQ8TC17 118 aaPredicted RBP16.32■□□□□ 0.2
CLSTN3-208ENST00000538933 PDIA6Q15084 440 aa16.31■□□□□ 0.2
CLSTN3-208ENST00000538933 WASHC4Q2M389 1173 aa16.31■□□□□ 0.2
CLSTN3-208ENST00000538933 FBXO46Q6PJ61 603 aaPredicted RBP16.31■□□□□ 0.2
CLSTN3-208ENST00000538933 DBNDD1Q9H9R9 158 aa16.31■□□□□ 0.2
CLSTN3-208ENST00000538933 HDAC9Q9UKV0 1011 aa16.31■□□□□ 0.2
CLSTN3-208ENST00000538933 PAPPA2Q9BXP8 1791 aa16.31■□□□□ 0.2
CLSTN3-208ENST00000538933 DDX60Q8IY21 1712 aaKnown RBP16.31■□□□□ 0.2
CLSTN3-208ENST00000538933 DDX46Q7L014 1031 aaKnown RBP16.3■□□□□ 0.2
CLSTN3-208ENST00000538933 SULF1Q8IWU6 871 aa16.3■□□□□ 0.2
CLSTN3-208ENST00000538933 GGA3Q9NZ52 723 aa16.3■□□□□ 0.2
CLSTN3-208ENST00000538933 POLLQ9UGP5 575 aa16.3■□□□□ 0.2
CLSTN3-208ENST00000538933 COL4A1P02462 1669 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms