RNA–Protein interactions for RNA: ENST00000538333.3

LIMK1-208, Transcript of LIM domain kinase 1, humanhuman

TSL 2 BASIC

Gene LIMK1, Length 2,170 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-208ENST00000538333 COL22A1Q8NFW1 1626 aaPredicted RBP16.83■□□□□ 0.28
LIMK1-208ENST00000538333 ZNF445P59923 1031 aa16.82■□□□□ 0.28
LIMK1-208ENST00000538333 TCIRG1Q13488 830 aa16.82■□□□□ 0.28
LIMK1-208ENST00000538333 DNAJC10Q8IXB1 793 aa16.82■□□□□ 0.28
LIMK1-208ENST00000538333 TEX13AQ9BXU3 409 aaPredicted RBP16.82■□□□□ 0.28
LIMK1-208ENST00000538333 WDR33Q9C0J8 1336 aaKnown RBP16.82■□□□□ 0.28
LIMK1-208ENST00000538333 WNK3Q9BYP7 1800 aa16.82■□□□□ 0.28
LIMK1-208ENST00000538333 TAF5LO75529 589 aa16.82■□□□□ 0.28
LIMK1-208ENST00000538333 IL15P40933 162 aaPredicted RBP16.82■□□□□ 0.28
LIMK1-208ENST00000538333 TRIM28Q13263 835 aaKnown RBP16.82■□□□□ 0.28
LIMK1-208ENST00000538333 CAVIN1Q6NZI2 390 aaKnown RBP16.82■□□□□ 0.28
LIMK1-208ENST00000538333 NDUFB9Q9Y6M9 179 aa16.82■□□□□ 0.28
LIMK1-208ENST00000538333 ROBO1Q9Y6N7 1651 aa16.82■□□□□ 0.28
LIMK1-208ENST00000538333 ZNF609O15014 1411 aa16.82■□□□□ 0.28
LIMK1-208ENST00000538333 COL9A3Q14050 684 aaPredicted RBP16.81■□□□□ 0.28
LIMK1-208ENST00000538333 USPL1Q5W0Q7 1092 aa16.81■□□□□ 0.28
LIMK1-208ENST00000538333 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.81■□□□□ 0.28
LIMK1-208ENST00000538333 EYA2O00167 538 aa16.81■□□□□ 0.28
LIMK1-208ENST00000538333 KCNJ4P48050 445 aa16.81■□□□□ 0.28
LIMK1-208ENST00000538333 ZSCAN23Q3MJ62 389 aa16.81■□□□□ 0.28
LIMK1-208ENST00000538333 TSGA10IPQ3SY00 556 aa16.81■□□□□ 0.28
LIMK1-208ENST00000538333 SH2B1Q9NRF2 756 aaPredicted RBP16.81■□□□□ 0.28
LIMK1-208ENST00000538333 AHDC1Q5TGY3 1603 aaPredicted RBP16.81■□□□□ 0.28
LIMK1-208ENST00000538333 BCL9O00512 1426 aa16.81■□□□□ 0.28
LIMK1-208ENST00000538333 CIAO1O76071 339 aa16.8■□□□□ 0.28
LIMK1-208ENST00000538333 ST3GAL1Q11201 340 aa16.8■□□□□ 0.28
LIMK1-208ENST00000538333 LRRC24Q50LG9 513 aa16.8■□□□□ 0.28
LIMK1-208ENST00000538333 ZSCAN31Q96LW9 406 aaPredicted RBP16.8■□□□□ 0.28
LIMK1-208ENST00000538333 TAF6LQ9Y6J9 622 aa16.8■□□□□ 0.28
LIMK1-208ENST00000538333 PSMA5P28066 241 aa16.79■□□□□ 0.28
LIMK1-208ENST00000538333 RNF20Q5VTR2 975 aa16.79■□□□□ 0.28
LIMK1-208ENST00000538333 DNAJC2Q99543 621 aaKnown RBP16.79■□□□□ 0.28
LIMK1-208ENST00000538333 HMG20BQ9P0W2 317 aa16.79■□□□□ 0.28
LIMK1-208ENST00000538333 NSFL1CQ9UNZ2 370 aaKnown RBP16.79■□□□□ 0.28
LIMK1-208ENST00000538333 PALLDQ8WX93 1383 aa16.79■□□□□ 0.28
LIMK1-208ENST00000538333 CHGBP05060 677 aa16.79■□□□□ 0.28
LIMK1-208ENST00000538333 NCLP19338 710 aaKnown RBP16.79■□□□□ 0.28
LIMK1-208ENST00000538333 KBTBD3Q8NAB2 608 aa16.79■□□□□ 0.28
LIMK1-208ENST00000538333 ZNF594Q96JF6 807 aaPredicted RBP16.79■□□□□ 0.28
LIMK1-208ENST00000538333 SYT1P21579 422 aa16.78■□□□□ 0.28
LIMK1-208ENST00000538333 ME3Q16798 604 aa16.78■□□□□ 0.28
LIMK1-208ENST00000538333 FAM43AQ8N2R8 423 aa16.78■□□□□ 0.28
LIMK1-208ENST00000538333 ALDH8A1Q9H2A2 487 aaPredicted RBP16.78■□□□□ 0.28
LIMK1-208ENST00000538333 SPEF2Q9C093 1822 aa16.78■□□□□ 0.28
LIMK1-208ENST00000538333 ANKRD36CQ5JPF3 1778 aa16.78■□□□□ 0.28
LIMK1-208ENST00000538333 STARD3NLO95772 234 aa16.78■□□□□ 0.28
LIMK1-208ENST00000538333 TIMM10P62072 90 aa16.78■□□□□ 0.28
LIMK1-208ENST00000538333 DDX46Q7L014 1031 aaKnown RBP16.78■□□□□ 0.28
LIMK1-208ENST00000538333 CCDC83Q8IWF9 413 aa16.78■□□□□ 0.28
LIMK1-208ENST00000538333 SLC4A9Q96Q91 983 aa16.78■□□□□ 0.28
LIMK1-208ENST00000538333 PLA2G12BQ9BX93 195 aa16.78■□□□□ 0.28
LIMK1-208ENST00000538333 SMC3Q9UQE7 1217 aa16.78■□□□□ 0.28
LIMK1-208ENST00000538333 STX6O43752 255 aa16.77■□□□□ 0.28
LIMK1-208ENST00000538333 MBD3O95983 291 aa16.77■□□□□ 0.28
LIMK1-208ENST00000538333 PCCAP05165 728 aaPredicted RBP16.77■□□□□ 0.28
LIMK1-208ENST00000538333 ZSCAN22P10073 491 aaPredicted RBP16.77■□□□□ 0.28
LIMK1-208ENST00000538333 KIF6Q6ZMV9 814 aa16.77■□□□□ 0.28
LIMK1-208ENST00000538333 NEUROD6Q96NK8 337 aa16.77■□□□□ 0.28
LIMK1-208ENST00000538333 PUS3Q9BZE2 481 aaKnown RBP16.77■□□□□ 0.28
LIMK1-208ENST00000538333 TMEM63CQ9P1W3 806 aa16.77■□□□□ 0.28
LIMK1-208ENST00000538333 RBM27Q9P2N5 1060 aaKnown RBP16.77■□□□□ 0.28
LIMK1-208ENST00000538333 TPCN1Q9ULQ1 816 aa16.77■□□□□ 0.28
LIMK1-208ENST00000538333 ZNF330Q9Y3S2 320 aaPredicted RBP16.77■□□□□ 0.28
LIMK1-208ENST00000538333 SH3TC1Q8TE82 1336 aa16.77■□□□□ 0.28
LIMK1-208ENST00000538333 RPS6KB1P23443 525 aa16.77■□□□□ 0.27
LIMK1-208ENST00000538333 MCMDC2Q4G0Z9 681 aa16.77■□□□□ 0.27
LIMK1-208ENST00000538333 TICAM2Q86XR7 235 aa16.77■□□□□ 0.27
LIMK1-208ENST00000538333 SEC62Q99442 399 aaKnown RBP16.77■□□□□ 0.27
LIMK1-208ENST00000538333 MAP3K15Q6ZN16 1313 aa16.76■□□□□ 0.27
LIMK1-208ENST00000538333 KAT6BQ8WYB5 2073 aa16.76■□□□□ 0.27
LIMK1-208ENST00000538333 BLOC1S2Q6QNY1 142 aa16.76■□□□□ 0.27
LIMK1-208ENST00000538333 GIGYF2Q6Y7W6 1299 aaKnown RBP16.76■□□□□ 0.27
LIMK1-208ENST00000538333 A0A1B0GUL7 405 aa16.75■□□□□ 0.27
LIMK1-208ENST00000538333 GJB2P29033 226 aa16.75■□□□□ 0.27
LIMK1-208ENST00000538333 CCDC129Q6ZRS4 1044 aa16.75■□□□□ 0.27
LIMK1-208ENST00000538333 ZBTB38Q8NAP3 1195 aaPredicted RBP16.75■□□□□ 0.27
LIMK1-208ENST00000538333 TMEM87AQ8NBN3 555 aa16.75■□□□□ 0.27
LIMK1-208ENST00000538333 PAG1Q9NWQ8 432 aa16.75■□□□□ 0.27
LIMK1-208ENST00000538333 FBXO3Q9UK99 471 aa16.75■□□□□ 0.27
LIMK1-208ENST00000538333 CSF1RP07333 972 aa16.75■□□□□ 0.27
LIMK1-208ENST00000538333 CYP19A1P11511 503 aaPredicted RBP16.75■□□□□ 0.27
LIMK1-208ENST00000538333 FAM89AQ96GI7 184 aa16.75■□□□□ 0.27
LIMK1-208ENST00000538333 NUP98P52948 1817 aa16.75■□□□□ 0.27
LIMK1-208ENST00000538333 MYH3P11055 1940 aa16.75■□□□□ 0.27
LIMK1-208ENST00000538333 GOLIM4O00461 696 aa16.74■□□□□ 0.27
LIMK1-208ENST00000538333 TOB2Q14106 344 aaPredicted RBP16.74■□□□□ 0.27
LIMK1-208ENST00000538333 CCDC57Q2TAC2 916 aa16.74■□□□□ 0.27
LIMK1-208ENST00000538333 DOT1LQ8TEK3 1739 aa16.74■□□□□ 0.27
LIMK1-208ENST00000538333 CCDC9Q9Y3X0 531 aaKnown RBP16.74■□□□□ 0.27
LIMK1-208ENST00000538333 LAMA4Q16363 1823 aa16.74■□□□□ 0.27
LIMK1-208ENST00000538333 F13A1P00488 732 aa16.74■□□□□ 0.27
LIMK1-208ENST00000538333 ANKRD1Q15327 319 aa16.74■□□□□ 0.27
LIMK1-208ENST00000538333 HLFQ16534 295 aa16.74■□□□□ 0.27
LIMK1-208ENST00000538333 NECAB1Q8N987 351 aa16.74■□□□□ 0.27
LIMK1-208ENST00000538333 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.74■□□□□ 0.27
LIMK1-208ENST00000538333 U3KPZ7 1027 aaPredicted RBP16.74■□□□□ 0.27
LIMK1-208ENST00000538333 CDHR2Q9BYE9 1310 aa16.73■□□□□ 0.27
LIMK1-208ENST00000538333 KRT32Q14532 448 aa16.73■□□□□ 0.27
LIMK1-208ENST00000538333 FOXD4L6Q3SYB3 417 aaPredicted RBP16.73■□□□□ 0.27
LIMK1-208ENST00000538333 FOXD4L3Q6VB84 417 aaPredicted RBP16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms