RNA–Protein interactions for RNA: ENST00000535927.5

VAMP1-205, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 4

Gene VAMP1, Length 578 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-205ENST00000535927 HDAC1Q13547 482 aaPredicted RBP20.23■□□□□ 0.83
VAMP1-205ENST00000535927 CRY2Q49AN0 593 aa20.23■□□□□ 0.83
VAMP1-205ENST00000535927 CEP85Q6P2H3 762 aa20.23■□□□□ 0.83
VAMP1-205ENST00000535927 LMBR1LQ6UX01 489 aa20.23■□□□□ 0.83
VAMP1-205ENST00000535927 SSH3Q8TE77 659 aa20.23■□□□□ 0.83
VAMP1-205ENST00000535927 PPP4R2Q9NY27 417 aa20.23■□□□□ 0.83
VAMP1-205ENST00000535927 DDX60Q8IY21 1712 aaKnown RBP20.22■□□□□ 0.83
VAMP1-205ENST00000535927 HCLS1P14317 486 aaPredicted RBP20.22■□□□□ 0.83
VAMP1-205ENST00000535927 CCDC57Q2TAC2 916 aa20.22■□□□□ 0.83
VAMP1-205ENST00000535927 HSP90AB4PQ58FF6 505 aa20.22■□□□□ 0.83
VAMP1-205ENST00000535927 RTL5Q5HYW3 569 aaPredicted RBP20.22■□□□□ 0.83
VAMP1-205ENST00000535927 SYT17Q9BSW7 474 aa20.22■□□□□ 0.83
VAMP1-205ENST00000535927 FHDC1Q9C0D6 1143 aaPredicted RBP20.22■□□□□ 0.83
VAMP1-205ENST00000535927 HOXA10P31260 410 aaPredicted RBP20.21■□□□□ 0.83
VAMP1-205ENST00000535927 TGFB2P61812 414 aa20.21■□□□□ 0.83
VAMP1-205ENST00000535927 IFIT5Q13325 482 aaKnown RBP20.21■□□□□ 0.83
VAMP1-205ENST00000535927 POLA2Q14181 598 aa20.21■□□□□ 0.83
VAMP1-205ENST00000535927 SYNE4Q8N205 404 aa20.21■□□□□ 0.83
VAMP1-205ENST00000535927 CDC5LQ99459 802 aaKnown RBP20.21■□□□□ 0.83
VAMP1-205ENST00000535927 CD2APQ9Y5K6 639 aa20.21■□□□□ 0.83
VAMP1-205ENST00000535927 ANKRD18BA2A2Z9 1011 aa20.2■□□□□ 0.82
VAMP1-205ENST00000535927 SRGAP3O43295 1099 aa20.2■□□□□ 0.82
VAMP1-205ENST00000535927 EPHA10Q5JZY3 1008 aa20.2■□□□□ 0.82
VAMP1-205ENST00000535927 TMC4Q7Z404 712 aa20.2■□□□□ 0.82
VAMP1-205ENST00000535927 JARID2Q92833 1246 aaPredicted RBP20.2■□□□□ 0.82
VAMP1-205ENST00000535927 RBM17Q96I25 401 aaKnown RBP20.2■□□□□ 0.82
VAMP1-205ENST00000535927 PCDHB15Q9Y5E8 787 aa20.2■□□□□ 0.82
VAMP1-205ENST00000535927 KIF13BQ9NQT8 1826 aa20.19■□□□□ 0.82
VAMP1-205ENST00000535927 ALDH1B1P30837 517 aa20.19■□□□□ 0.82
VAMP1-205ENST00000535927 DDX46Q7L014 1031 aaKnown RBP20.19■□□□□ 0.82
VAMP1-205ENST00000535927 CRAMP1Q96RY5 1269 aa20.19■□□□□ 0.82
VAMP1-205ENST00000535927 COPRSQ9NQ92 184 aa20.19■□□□□ 0.82
VAMP1-205ENST00000535927 ABCC12Q96J65 1359 aa20.19■□□□□ 0.82
VAMP1-205ENST00000535927 C10orf71Q711Q0 1435 aa20.19■□□□□ 0.82
VAMP1-205ENST00000535927 H0YIN7 160 aa20.18■□□□□ 0.82
VAMP1-205ENST00000535927 NPR1P16066 1061 aa20.18■□□□□ 0.82
VAMP1-205ENST00000535927 RPGRQ92834 1020 aaKnown RBP20.18■□□□□ 0.82
VAMP1-205ENST00000535927 GCC1Q96CN9 775 aa20.18■□□□□ 0.82
VAMP1-205ENST00000535927 NOP58Q9Y2X3 529 aaKnown RBP20.18■□□□□ 0.82
VAMP1-205ENST00000535927 BBOX1O75936 387 aa20.17■□□□□ 0.82
VAMP1-205ENST00000535927 STYK1Q6J9G0 422 aa20.17■□□□□ 0.82
VAMP1-205ENST00000535927 MASTLQ96GX5 879 aa20.17■□□□□ 0.82
VAMP1-205ENST00000535927 C1orf115Q9H7X2 142 aa20.17■□□□□ 0.82
VAMP1-205ENST00000535927 UTRNP46939 3433 aa20.17■□□□□ 0.82
VAMP1-205ENST00000535927 CIAO1O76071 339 aa20.16■□□□□ 0.82
VAMP1-205ENST00000535927 SRGNP10124 158 aa20.16■□□□□ 0.82
VAMP1-205ENST00000535927 ITGA6P23229 1130 aa20.16■□□□□ 0.82
VAMP1-205ENST00000535927 CHMP3Q9Y3E7 222 aa20.16■□□□□ 0.82
VAMP1-205ENST00000535927 RAB11FIP3O75154 756 aa20.15■□□□□ 0.82
VAMP1-205ENST00000535927 IGHMBP2P38935 993 aaKnown RBP20.15■□□□□ 0.82
VAMP1-205ENST00000535927 ERC1Q8IUD2 1116 aa20.15■□□□□ 0.82
VAMP1-205ENST00000535927 SIRT2Q8IXJ6 389 aa20.15■□□□□ 0.82
VAMP1-205ENST00000535927 CNKSR1Q969H4 720 aa20.15■□□□□ 0.82
VAMP1-205ENST00000535927 CCDC136Q96JN2 1154 aa20.15■□□□□ 0.82
VAMP1-205ENST00000535927 GREM2Q9H772 168 aa20.15■□□□□ 0.82
VAMP1-205ENST00000535927 DCTPP1Q9H773 170 aa20.15■□□□□ 0.82
VAMP1-205ENST00000535927 ANKRD31Q8N7Z5 1873 aa20.15■□□□□ 0.82
VAMP1-205ENST00000535927 PNMA6EA0A0J9YXQ4 647 aa20.14■□□□□ 0.81
VAMP1-205ENST00000535927 RFX5P48382 616 aaPredicted RBP20.14■□□□□ 0.81
VAMP1-205ENST00000535927 RPS8P62241 208 aaKnown RBP20.14■□□□□ 0.81
VAMP1-205ENST00000535927 GRIPAP1Q4V328 841 aa20.14■□□□□ 0.81
VAMP1-205ENST00000535927 TAF7LQ5H9L4 462 aa20.14■□□□□ 0.81
VAMP1-205ENST00000535927 ANKRD18AQ8IVF6 992 aa20.14■□□□□ 0.81
VAMP1-205ENST00000535927 C1QTNF8P60827 252 aa20.13■□□□□ 0.81
VAMP1-205ENST00000535927 PTPN12Q05209 780 aaKnown RBP20.13■□□□□ 0.81
VAMP1-205ENST00000535927 G3BP1Q13283 466 aaKnown RBP eCLIP20.13■□□□□ 0.81
VAMP1-205ENST00000535927 GRAPQ13588 217 aa20.13■□□□□ 0.81
VAMP1-205ENST00000535927 FAM161AQ3B820 660 aa20.13■□□□□ 0.81
VAMP1-205ENST00000535927 C2CD5Q86YS7 1000 aa20.13■□□□□ 0.81
VAMP1-205ENST00000535927 GRAPLQ8TC17 118 aaPredicted RBP20.13■□□□□ 0.81
VAMP1-205ENST00000535927 MPHOSPH8Q99549 860 aa20.13■□□□□ 0.81
VAMP1-205ENST00000535927 BSDC1Q9NW68 430 aaPredicted RBP20.13■□□□□ 0.81
VAMP1-205ENST00000535927 EYA2O00167 538 aa20.11■□□□□ 0.81
VAMP1-205ENST00000535927 IL15P40933 162 aaPredicted RBP20.11■□□□□ 0.81
VAMP1-205ENST00000535927 CC2D2BQ6DHV5 1058 aa20.11■□□□□ 0.81
VAMP1-205ENST00000535927 LDHAL6AQ6ZMR3 332 aa20.11■□□□□ 0.81
VAMP1-205ENST00000535927 CENPQQ7L2Z9 268 aaPredicted RBP20.11■□□□□ 0.81
VAMP1-205ENST00000535927 TMX4Q9H1E5 349 aaPredicted RBP20.11■□□□□ 0.81
VAMP1-205ENST00000535927 SURF6O75683 361 aaKnown RBP20.1■□□□□ 0.81
VAMP1-205ENST00000535927 GPR162Q16538 588 aa20.1■□□□□ 0.81
VAMP1-205ENST00000535927 C3orf67Q6ZVT6 689 aa20.1■□□□□ 0.81
VAMP1-205ENST00000535927 SMC5Q8IY18 1101 aa20.1■□□□□ 0.81
VAMP1-205ENST00000535927 CCDC24Q8N4L8 307 aa20.1■□□□□ 0.81
VAMP1-205ENST00000535927 MROH5Q6ZUA9 1318 aa20.09■□□□□ 0.81
VAMP1-205ENST00000535927 TNRC6CQ9HCJ0 1690 aaKnown RBP20.09■□□□□ 0.81
VAMP1-205ENST00000535927 DLEC1Q9Y238 1755 aa20.08■□□□□ 0.81
VAMP1-205ENST00000535927 SP8Q8IXZ3 490 aa20.08■□□□□ 0.81
VAMP1-205ENST00000535927 TTLL6Q8N841 843 aa20.08■□□□□ 0.81
VAMP1-205ENST00000535927 KIF1BPQ96EK5 621 aa20.08■□□□□ 0.81
VAMP1-205ENST00000535927 ANKRD2Q9GZV1 360 aa20.08■□□□□ 0.81
VAMP1-205ENST00000535927 SEC31BQ9NQW1 1179 aa20.08■□□□□ 0.81
VAMP1-205ENST00000535927 CNNM1Q9NRU3 951 aa20.08■□□□□ 0.81
VAMP1-205ENST00000535927 PIM2Q9P1W9 311 aa20.08■□□□□ 0.81
VAMP1-205ENST00000535927 ZBTB47Q9UFB7 747 aaPredicted RBP20.08■□□□□ 0.81
VAMP1-205ENST00000535927 RIPOR2Q9Y4F9 1068 aa20.08■□□□□ 0.81
VAMP1-205ENST00000535927 GTF3C3Q9Y5Q9 886 aa20.08■□□□□ 0.81
VAMP1-205ENST00000535927 SOGA3Q5TF21 947 aa20.07■□□□□ 0.8
VAMP1-205ENST00000535927 GPR108Q9NPR9 543 aa20.07■□□□□ 0.8
VAMP1-205ENST00000535927 IGHDP01880 384 aa20.06■□□□□ 0.8
VAMP1-205ENST00000535927 OS9Q13438 667 aaPredicted RBP20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms