RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 TLL2Q9Y6L7 1015 aa14.67□□□□□ -0.06
CLSTN3-206ENST00000535668 LAMB2P55268 1798 aa14.67□□□□□ -0.06
CLSTN3-206ENST00000535668 TRPM7Q96QT4 1865 aa14.67□□□□□ -0.06
CLSTN3-206ENST00000535668 ZNF609O15014 1411 aa14.66□□□□□ -0.06
CLSTN3-206ENST00000535668 DUOX1Q9NRD9 1551 aa14.66□□□□□ -0.06
CLSTN3-206ENST00000535668 ECE1P42892 770 aa14.66□□□□□ -0.06
CLSTN3-206ENST00000535668 TNIP1Q15025 636 aa14.66□□□□□ -0.06
CLSTN3-206ENST00000535668 AOC3Q16853 763 aa14.66□□□□□ -0.06
CLSTN3-206ENST00000535668 ANKRD13DQ6ZTN6 518 aa14.66□□□□□ -0.06
CLSTN3-206ENST00000535668 MPNDQ8N594 471 aa14.66□□□□□ -0.06
CLSTN3-206ENST00000535668 HYPKQ9NX55 129 aa14.66□□□□□ -0.06
CLSTN3-206ENST00000535668 DPP8Q6V1X1 898 aaPredicted RBP14.65□□□□□ -0.06
CLSTN3-206ENST00000535668 DDX46Q7L014 1031 aaKnown RBP14.65□□□□□ -0.06
CLSTN3-206ENST00000535668 AIDAQ96BJ3 306 aa14.65□□□□□ -0.06
CLSTN3-206ENST00000535668 TRMT112Q9UI30 125 aaKnown RBP14.65□□□□□ -0.06
CLSTN3-206ENST00000535668 GJA3Q9Y6H8 435 aa14.65□□□□□ -0.06
CLSTN3-206ENST00000535668 ANXA1P04083 346 aa14.64□□□□□ -0.07
CLSTN3-206ENST00000535668 HSPA8P11142 646 aaKnown RBP14.64□□□□□ -0.07
CLSTN3-206ENST00000535668 CIAPIN1Q6FI81 312 aa14.64□□□□□ -0.07
CLSTN3-206ENST00000535668 SAPCD2Q86UD0 394 aa14.64□□□□□ -0.07
CLSTN3-206ENST00000535668 SLC51AQ86UW1 340 aa14.64□□□□□ -0.07
CLSTN3-206ENST00000535668 CA12O43570 354 aa14.63□□□□□ -0.07
CLSTN3-206ENST00000535668 HCLS1P14317 486 aaPredicted RBP14.63□□□□□ -0.07
CLSTN3-206ENST00000535668 CHMP4AQ9BY43 222 aa14.63□□□□□ -0.07
CLSTN3-206ENST00000535668 PODXL2Q9NZ53 605 aa14.63□□□□□ -0.07
CLSTN3-206ENST00000535668 CHPF2Q9P2E5 772 aa14.63□□□□□ -0.07
CLSTN3-206ENST00000535668 YDJCA8MPS7 323 aa14.62□□□□□ -0.07
CLSTN3-206ENST00000535668 HSP90B1P14625 803 aaKnown RBP14.62□□□□□ -0.07
CLSTN3-206ENST00000535668 RPS12P25398 132 aaKnown RBP14.62□□□□□ -0.07
CLSTN3-206ENST00000535668 GMPSP49915 693 aaPredicted RBP14.62□□□□□ -0.07
CLSTN3-206ENST00000535668 HIRAP54198 1017 aaPredicted RBP14.62□□□□□ -0.07
CLSTN3-206ENST00000535668 HDGFL1Q5TGJ6 251 aa14.62□□□□□ -0.07
CLSTN3-206ENST00000535668 DDX60Q8IY21 1712 aaKnown RBP14.62□□□□□ -0.07
CLSTN3-206ENST00000535668 NECTIN2Q92692 538 aa14.62□□□□□ -0.07
CLSTN3-206ENST00000535668 CAPNS2Q96L46 248 aa14.62□□□□□ -0.07
CLSTN3-206ENST00000535668 KRT24Q2M2I5 525 aa14.61□□□□□ -0.07
CLSTN3-206ENST00000535668 NCBP3Q53F19 620 aaKnown RBP14.61□□□□□ -0.07
CLSTN3-206ENST00000535668 CDC37L1Q7L3B6 337 aa14.61□□□□□ -0.07
CLSTN3-206ENST00000535668 GPR101Q96P66 508 aaPredicted RBP14.61□□□□□ -0.07
CLSTN3-206ENST00000535668 IFT57Q9NWB7 429 aa14.61□□□□□ -0.07
CLSTN3-206ENST00000535668 ABT1Q9ULW3 272 aaKnown RBP14.61□□□□□ -0.07
CLSTN3-206ENST00000535668 ADAMTS8Q9UP79 889 aa14.61□□□□□ -0.07
CLSTN3-206ENST00000535668 LBX1P52954 281 aa14.6□□□□□ -0.07
CLSTN3-206ENST00000535668 AIMP1Q12904 312 aaKnown RBP14.6□□□□□ -0.07
CLSTN3-206ENST00000535668 ZBTB38Q8NAP3 1195 aaPredicted RBP14.6□□□□□ -0.07
CLSTN3-206ENST00000535668 BRPF1P55201 1214 aaPredicted RBP14.59□□□□□ -0.07
CLSTN3-206ENST00000535668 CALD1Q05682 793 aaKnown RBP14.59□□□□□ -0.07
CLSTN3-206ENST00000535668 DUSP27Q5VZP5 1158 aa14.59□□□□□ -0.07
CLSTN3-206ENST00000535668 CCDC191Q8NCU4 936 aa14.59□□□□□ -0.07
CLSTN3-206ENST00000535668 PRKRIP1Q9H875 184 aaPredicted RBP14.59□□□□□ -0.07
CLSTN3-206ENST00000535668 CNOT7Q9UIV1 285 aaKnown RBP14.59□□□□□ -0.07
CLSTN3-206ENST00000535668 TRAF5O00463 557 aa14.58□□□□□ -0.08
CLSTN3-206ENST00000535668 RGS19P49795 217 aa14.58□□□□□ -0.08
CLSTN3-206ENST00000535668 RPS8P62241 208 aaKnown RBP14.58□□□□□ -0.08
CLSTN3-206ENST00000535668 WASHC4Q2M389 1173 aa14.58□□□□□ -0.08
CLSTN3-206ENST00000535668 CELF1Q92879 486 aaKnown RBP14.58□□□□□ -0.08
CLSTN3-206ENST00000535668 FAM89AQ96GI7 184 aa14.58□□□□□ -0.08
CLSTN3-206ENST00000535668 MBIPQ9NS73 344 aa14.58□□□□□ -0.08
CLSTN3-206ENST00000535668 POLLQ9UGP5 575 aa14.58□□□□□ -0.08
CLSTN3-206ENST00000535668 H7C1D1 291 aa14.57□□□□□ -0.08
CLSTN3-206ENST00000535668 TCERG1O14776 1098 aaKnown RBP14.57□□□□□ -0.08
CLSTN3-206ENST00000535668 VIL1P09327 827 aaKnown RBP14.57□□□□□ -0.08
CLSTN3-206ENST00000535668 GNAI1P63096 354 aa14.57□□□□□ -0.08
CLSTN3-206ENST00000535668 FMR1Q06787 632 aaKnown RBP eCLIP14.57□□□□□ -0.08
CLSTN3-206ENST00000535668 WDR43Q15061 677 aaKnown RBP eCLIP14.57□□□□□ -0.08
CLSTN3-206ENST00000535668 EYA3Q99504 573 aa14.57□□□□□ -0.08
CLSTN3-206ENST00000535668 TAF1P21675 1872 aa14.57□□□□□ -0.08
CLSTN3-206ENST00000535668 IRS4O14654 1257 aaPredicted RBP14.56□□□□□ -0.08
CLSTN3-206ENST00000535668 RAD17O75943 681 aa14.56□□□□□ -0.08
CLSTN3-206ENST00000535668 PCCAP05165 728 aaPredicted RBP14.56□□□□□ -0.08
CLSTN3-206ENST00000535668 CYP4F22Q6NT55 531 aa14.56□□□□□ -0.08
CLSTN3-206ENST00000535668 TBC1D16Q8TBP0 767 aa14.56□□□□□ -0.08
CLSTN3-206ENST00000535668 TRPM4Q8TD43 1214 aa14.56□□□□□ -0.08
CLSTN3-206ENST00000535668 NSFL1CQ9UNZ2 370 aaKnown RBP14.56□□□□□ -0.08
CLSTN3-206ENST00000535668 RTL9Q8NET4 1388 aa14.56□□□□□ -0.08
CLSTN3-206ENST00000535668 PSMD14O00487 310 aa14.55□□□□□ -0.08
CLSTN3-206ENST00000535668 CELF2O95319 508 aaKnown RBP14.55□□□□□ -0.08
CLSTN3-206ENST00000535668 MMP14P50281 582 aa14.55□□□□□ -0.08
CLSTN3-206ENST00000535668 DDX10Q13206 875 aaKnown RBP14.55□□□□□ -0.08
CLSTN3-206ENST00000535668 NOGQ13253 232 aa14.55□□□□□ -0.08
CLSTN3-206ENST00000535668 CCDC27Q2M243 656 aa14.55□□□□□ -0.08
CLSTN3-206ENST00000535668 MICALL2Q8IY33 904 aa14.55□□□□□ -0.08
CLSTN3-206ENST00000535668 CCDC146Q8IYE0 955 aa14.55□□□□□ -0.08
CLSTN3-206ENST00000535668 ABHD8Q96I13 439 aa14.55□□□□□ -0.08
CLSTN3-206ENST00000535668 BEGAINQ9BUH8 593 aa14.55□□□□□ -0.08
CLSTN3-206ENST00000535668 BCL2L13Q9BXK5 485 aa14.55□□□□□ -0.08
CLSTN3-206ENST00000535668 GLIS2Q9BZE0 524 aaPredicted RBP14.55□□□□□ -0.08
CLSTN3-206ENST00000535668 CAPN15O75808 1086 aa14.54□□□□□ -0.08
CLSTN3-206ENST00000535668 ZNF280AP59817 542 aaPredicted RBP14.54□□□□□ -0.08
CLSTN3-206ENST00000535668 GPSM2P81274 684 aa14.54□□□□□ -0.08
CLSTN3-206ENST00000535668 NEUROD2Q15784 382 aa14.54□□□□□ -0.08
CLSTN3-206ENST00000535668 AGBL3Q8NEM8 1001 aa14.54□□□□□ -0.08
CLSTN3-206ENST00000535668 GMLQ99445 158 aa14.54□□□□□ -0.08
CLSTN3-206ENST00000535668 COL4A1P02462 1669 aa14.54□□□□□ -0.08
CLSTN3-206ENST00000535668 ATP5J2-PTCD1G3V325 749 aa14.53□□□□□ -0.08
CLSTN3-206ENST00000535668 GOLGA2Q08379 1002 aa14.53□□□□□ -0.08
CLSTN3-206ENST00000535668 METTL22Q9BUU2 404 aaPredicted RBP14.53□□□□□ -0.08
CLSTN3-206ENST00000535668 SAGE1Q9NXZ1 904 aa14.53□□□□□ -0.08
CLSTN3-206ENST00000535668 SCN9AQ15858 1988 aa14.53□□□□□ -0.08
CLSTN3-206ENST00000535668 ECE2O60344 883 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms