RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 SATB1Q01826 763 aa16.49■□□□□ 0.23
PCF11-204ENST00000530660 MCM6Q14566 821 aa16.49■□□□□ 0.23
PCF11-204ENST00000530660 ERCC4Q92889 916 aaPredicted RBP16.49■□□□□ 0.23
PCF11-204ENST00000530660 HYPKQ9NX55 129 aa16.49■□□□□ 0.23
PCF11-204ENST00000530660 KIF24Q5T7B8 1368 aa16.49■□□□□ 0.23
PCF11-204ENST00000530660 ATP6V1AP38606 617 aa16.49■□□□□ 0.23
PCF11-204ENST00000530660 PLEKHO1Q53GL0 409 aaPredicted RBP16.49■□□□□ 0.23
PCF11-204ENST00000530660 LEO1Q8WVC0 666 aaPredicted RBP16.49■□□□□ 0.23
PCF11-204ENST00000530660 NPHP3Q7Z494 1330 aa16.49■□□□□ 0.23
PCF11-204ENST00000530660 TTC21AQ8NDW8 1320 aa16.49■□□□□ 0.23
PCF11-204ENST00000530660 SMC2O95347 1197 aa16.48■□□□□ 0.23
PCF11-204ENST00000530660 GGT6Q6P531 493 aa16.48■□□□□ 0.23
PCF11-204ENST00000530660 NPATQ14207 1427 aa16.48■□□□□ 0.23
PCF11-204ENST00000530660 DHX40Q8IX18 779 aaKnown RBP16.48■□□□□ 0.23
PCF11-204ENST00000530660 MICALL1Q8N3F8 863 aa16.48■□□□□ 0.23
PCF11-204ENST00000530660 SALL3Q9BXA9 1300 aa16.48■□□□□ 0.23
PCF11-204ENST00000530660 SSH2Q76I76 1423 aa16.48■□□□□ 0.23
PCF11-204ENST00000530660 LONRF2Q1L5Z9 754 aa16.48■□□□□ 0.23
PCF11-204ENST00000530660 CCDC30Q5VVM6 783 aa16.48■□□□□ 0.23
PCF11-204ENST00000530660 CABP1Q9NZU7 370 aa16.48■□□□□ 0.23
PCF11-204ENST00000530660 EMILIN1Q9Y6C2 1016 aa16.48■□□□□ 0.23
PCF11-204ENST00000530660 GSDMDP57764 484 aa16.47■□□□□ 0.23
PCF11-204ENST00000530660 LRRFIP1Q32MZ4 808 aaKnown RBP16.47■□□□□ 0.23
PCF11-204ENST00000530660 HDGFL2Q7Z4V5 671 aaPredicted RBP16.47■□□□□ 0.23
PCF11-204ENST00000530660 PARP3Q9Y6F1 533 aa16.47■□□□□ 0.23
PCF11-204ENST00000530660 PSDA5PKW4 1024 aaPredicted RBP16.47■□□□□ 0.23
PCF11-204ENST00000530660 TRIM65Q6PJ69 517 aa16.47■□□□□ 0.23
PCF11-204ENST00000530660 TMC6Q7Z403 805 aa16.47■□□□□ 0.23
PCF11-204ENST00000530660 CCDC189A1A4V9 331 aa16.47■□□□□ 0.23
PCF11-204ENST00000530660 ME3Q16798 604 aa16.47■□□□□ 0.23
PCF11-204ENST00000530660 AOPEPQ8N6M6 819 aa16.47■□□□□ 0.23
PCF11-204ENST00000530660 SPG7Q9UQ90 795 aa16.47■□□□□ 0.23
PCF11-204ENST00000530660 AKAP2Q9Y2D5 859 aa16.47■□□□□ 0.23
PCF11-204ENST00000530660 FAN1Q9Y2M0 1017 aa16.47■□□□□ 0.23
PCF11-204ENST00000530660 RPGRIP1LQ68CZ1 1315 aa16.46■□□□□ 0.23
PCF11-204ENST00000530660 PHACTR2O75167 634 aa16.46■□□□□ 0.23
PCF11-204ENST00000530660 HMMRO75330 724 aa16.46■□□□□ 0.23
PCF11-204ENST00000530660 MNAT1P51948 309 aa16.46■□□□□ 0.23
PCF11-204ENST00000530660 LRRC31Q6UY01 552 aa16.46■□□□□ 0.23
PCF11-204ENST00000530660 DNAAF4Q8WXU2 420 aa16.46■□□□□ 0.23
PCF11-204ENST00000530660 MED4Q9NPJ6 270 aa16.46■□□□□ 0.23
PCF11-204ENST00000530660 ANKRD26Q9UPS8 1709 aa16.46■□□□□ 0.23
PCF11-204ENST00000530660 SFPQP23246 707 aaKnown RBP eCLIP16.46■□□□□ 0.23
PCF11-204ENST00000530660 ADCK5Q3MIX3 580 aa16.46■□□□□ 0.23
PCF11-204ENST00000530660 CEP89Q96ST8 783 aa16.46■□□□□ 0.23
PCF11-204ENST00000530660 TPM1P09493 284 aa16.45■□□□□ 0.22
PCF11-204ENST00000530660 GPR161Q8N6U8 529 aaKnown RBP16.45■□□□□ 0.22
PCF11-204ENST00000530660 KAT2BQ92831 832 aa16.45■□□□□ 0.22
PCF11-204ENST00000530660 SCAND2PQ9GZW5 306 aaPredicted RBP16.45■□□□□ 0.22
PCF11-204ENST00000530660 OSBPL5Q9H0X9 879 aaPredicted RBP16.45■□□□□ 0.22
PCF11-204ENST00000530660 CDC42BPGQ6DT37 1551 aa16.45■□□□□ 0.22
PCF11-204ENST00000530660 ISM2Q6H9L7 571 aa16.45■□□□□ 0.22
PCF11-204ENST00000530660 TMED8Q6PL24 325 aaPredicted RBP16.45■□□□□ 0.22
PCF11-204ENST00000530660 TADA2BQ86TJ2 420 aa16.45■□□□□ 0.22
PCF11-204ENST00000530660 PHLPP2Q6ZVD8 1323 aa16.45■□□□□ 0.22
PCF11-204ENST00000530660 ZFYVE9O95405 1425 aa16.45■□□□□ 0.22
PCF11-204ENST00000530660 KIF1CO43896 1103 aaKnown RBP16.45■□□□□ 0.22
PCF11-204ENST00000530660 APOBRQ0VD83 1088 aa16.45■□□□□ 0.22
PCF11-204ENST00000530660 WWC2Q6AWC2 1192 aa16.45■□□□□ 0.22
PCF11-204ENST00000530660 LRRCC1Q9C099 1032 aa16.45■□□□□ 0.22
PCF11-204ENST00000530660 ZSWIM4Q9H7M6 989 aa16.45■□□□□ 0.22
PCF11-204ENST00000530660 RIMS2Q9UQ26 1411 aa16.44■□□□□ 0.22
PCF11-204ENST00000530660 CEBPZQ03701 1054 aaKnown RBP16.44■□□□□ 0.22
PCF11-204ENST00000530660 SLC4A10Q6U841 1118 aa16.44■□□□□ 0.22
PCF11-204ENST00000530660 STX1AQ16623 288 aa16.44■□□□□ 0.22
PCF11-204ENST00000530660 SRRTQ9BXP5 876 aaKnown RBP16.44■□□□□ 0.22
PCF11-204ENST00000530660 SUGCTQ9HAC7 445 aa16.44■□□□□ 0.22
PCF11-204ENST00000530660 YTHDC2Q9H6S0 1430 aaKnown RBP16.44■□□□□ 0.22
PCF11-204ENST00000530660 CAVIN2O95810 425 aa16.44■□□□□ 0.22
PCF11-204ENST00000530660 IL13P35225 146 aa16.44■□□□□ 0.22
PCF11-204ENST00000530660 HAP1P54257 671 aaPredicted RBP16.44■□□□□ 0.22
PCF11-204ENST00000530660 XPO4Q9C0E2 1151 aaKnown RBP16.44■□□□□ 0.22
PCF11-204ENST00000530660 JAKMIP1Q96N16 626 aaKnown RBP16.43■□□□□ 0.22
PCF11-204ENST00000530660 ABCC3O15438 1527 aa16.43■□□□□ 0.22
PCF11-204ENST00000530660 MAP2K7O14733 419 aa16.43■□□□□ 0.22
PCF11-204ENST00000530660 RPS6KA5O75582 802 aa16.43■□□□□ 0.22
PCF11-204ENST00000530660 COL9A3Q14050 684 aaPredicted RBP16.43■□□□□ 0.22
PCF11-204ENST00000530660 EFCAB13Q8IY85 973 aa16.43■□□□□ 0.22
PCF11-204ENST00000530660 BICC1Q9H694 974 aaKnown RBP16.43■□□□□ 0.22
PCF11-204ENST00000530660 CPP00450 1065 aa16.42■□□□□ 0.22
PCF11-204ENST00000530660 LSG1Q9H089 658 aaKnown RBP16.42■□□□□ 0.22
PCF11-204ENST00000530660 IL1RAPL2Q9NP60 686 aa16.42■□□□□ 0.22
PCF11-204ENST00000530660 IFNKQ9P0W0 207 aa16.42■□□□□ 0.22
PCF11-204ENST00000530660 KIAA0232Q92628 1395 aa16.42■□□□□ 0.22
PCF11-204ENST00000530660 TTC41PQ6P2S7 1318 aa16.42■□□□□ 0.22
PCF11-204ENST00000530660 PPP2R5AQ15172 486 aa16.42■□□□□ 0.22
PCF11-204ENST00000530660 RNF217Q8TC41 542 aa16.42■□□□□ 0.22
PCF11-204ENST00000530660 F6X3S4 739 aa16.42■□□□□ 0.22
PCF11-204ENST00000530660 SRGAP3O43295 1099 aa16.42■□□□□ 0.22
PCF11-204ENST00000530660 SCP2P22307 547 aa16.42■□□□□ 0.22
PCF11-204ENST00000530660 LIG3P49916 1009 aa16.42■□□□□ 0.22
PCF11-204ENST00000530660 PPP2R3AQ06190 1150 aa16.42■□□□□ 0.22
PCF11-204ENST00000530660 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.42■□□□□ 0.22
PCF11-204ENST00000530660 CDK19Q9BWU1 502 aa16.42■□□□□ 0.22
PCF11-204ENST00000530660 SGSM2O43147 1006 aa16.41■□□□□ 0.22
PCF11-204ENST00000530660 LARP1Q6PKG0 1096 aaKnown RBP16.41■□□□□ 0.22
PCF11-204ENST00000530660 MKRN1Q9UHC7 482 aaKnown RBP16.41■□□□□ 0.22
PCF11-204ENST00000530660 TPCN1Q9ULQ1 816 aa16.41■□□□□ 0.22
PCF11-204ENST00000530660 TUBGCP6Q96RT7 1819 aa16.41■□□□□ 0.22
PCF11-204ENST00000530660 ZRSR1Q15695 479 aaKnown RBP16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms