RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 TRPM3Q9HCF6 1732 aaPredicted RBP23.13■■□□□ 1.29
PCF11-203ENST00000530304 AP5Z1O43299 807 aa23.13■■□□□ 1.29
PCF11-203ENST00000530304 CCDC192P0DO97 292 aa23.13■■□□□ 1.29
PCF11-203ENST00000530304 PHKG2P15735 406 aa23.13■■□□□ 1.29
PCF11-203ENST00000530304 ATP5JP18859 108 aa23.13■■□□□ 1.29
PCF11-203ENST00000530304 STK3Q13188 491 aa23.13■■□□□ 1.29
PCF11-203ENST00000530304 CHMP3Q9Y3E7 222 aa23.13■■□□□ 1.29
PCF11-203ENST00000530304 RFX5P48382 616 aaPredicted RBP23.12■■□□□ 1.29
PCF11-203ENST00000530304 USPL1Q5W0Q7 1092 aa23.12■■□□□ 1.29
PCF11-203ENST00000530304 NLRP2Q9NX02 1062 aa23.12■■□□□ 1.29
PCF11-203ENST00000530304 PTPN12Q05209 780 aaKnown RBP23.12■■□□□ 1.29
PCF11-203ENST00000530304 TFCP2Q12800 502 aa23.12■■□□□ 1.29
PCF11-203ENST00000530304 NOLC1Q14978 699 aaKnown RBP eCLIP23.12■■□□□ 1.291e-11■□□□□ 9.8
PCF11-203ENST00000530304 TNNI3KQ59H18 835 aa23.12■■□□□ 1.29
PCF11-203ENST00000530304 LRP10Q7Z4F1 713 aa23.12■■□□□ 1.29
PCF11-203ENST00000530304 USP16Q9Y5T5 823 aa23.12■■□□□ 1.29
PCF11-203ENST00000530304 FPGT-TNNI3KV9GXZ4 949 aa23.12■■□□□ 1.29
PCF11-203ENST00000530304 ZNF142P52746 1687 aaPredicted RBP23.12■■□□□ 1.29
PCF11-203ENST00000530304 SCN11AQ9UI33 1791 aa23.12■■□□□ 1.29
PCF11-203ENST00000530304 DYNC1I1O14576 645 aa23.12■■□□□ 1.29
PCF11-203ENST00000530304 PIP4K2AP48426 406 aaPredicted RBP23.12■■□□□ 1.29
PCF11-203ENST00000530304 DNTTIP2Q5QJE6 756 aaKnown RBP23.12■■□□□ 1.29
PCF11-203ENST00000530304 LIG1P18858 919 aa23.11■■□□□ 1.29
PCF11-203ENST00000530304 COL15A1P39059 1388 aa23.11■■□□□ 1.29
PCF11-203ENST00000530304 NDUFB9Q9Y6M9 179 aa23.11■■□□□ 1.29
PCF11-203ENST00000530304 TATP17735 454 aaPredicted RBP23.1■■□□□ 1.29
PCF11-203ENST00000530304 KRT32Q14532 448 aa23.1■■□□□ 1.29
PCF11-203ENST00000530304 CAMK4Q16566 473 aa23.1■■□□□ 1.29
PCF11-203ENST00000530304 SCAND2PQ9GZW5 306 aaPredicted RBP23.1■■□□□ 1.29
PCF11-203ENST00000530304 NUP62CLQ9H1M0 184 aa23.1■■□□□ 1.29
PCF11-203ENST00000530304 SNRPA1P09661 255 aaKnown RBP23.09■■□□□ 1.29
PCF11-203ENST00000530304 MAP3K11Q16584 847 aa23.09■■□□□ 1.29
PCF11-203ENST00000530304 UBE3BQ7Z3V4 1068 aa23.09■■□□□ 1.29
PCF11-203ENST00000530304 TFIP11Q9UBB9 837 aaKnown RBP23.09■■□□□ 1.29
PCF11-203ENST00000530304 C17orf53Q8N3J3 647 aaPredicted RBP23.09■■□□□ 1.29
PCF11-203ENST00000530304 NEK1Q96PY6 1258 aa23.09■■□□□ 1.29
PCF11-203ENST00000530304 CHGBP05060 677 aa23.08■■□□□ 1.29
PCF11-203ENST00000530304 RABL6Q3YEC7 729 aaPredicted RBP23.08■■□□□ 1.29
PCF11-203ENST00000530304 SPATA32Q96LK8 384 aa23.08■■□□□ 1.29
PCF11-203ENST00000530304 IFNL2Q8IZJ0 200 aa23.08■■□□□ 1.28
PCF11-203ENST00000530304 TTC5Q8N0Z6 440 aa23.07■■□□□ 1.28
PCF11-203ENST00000530304 DNAJC2Q99543 621 aaKnown RBP23.07■■□□□ 1.28
PCF11-203ENST00000530304 CCDC129Q6ZRS4 1044 aa23.07■■□□□ 1.28
PCF11-203ENST00000530304 GTF3C6Q969F1 213 aa23.07■■□□□ 1.28
PCF11-203ENST00000530304 SEC62Q99442 399 aaKnown RBP23.07■■□□□ 1.28
PCF11-203ENST00000530304 DBNDD2Q9BQY9 259 aa23.07■■□□□ 1.28
PCF11-203ENST00000530304 GOLGA6L4A6NEF3 574 aa23.06■■□□□ 1.28
PCF11-203ENST00000530304 ATP5J2-PTCD1G3V325 749 aa23.06■■□□□ 1.28
PCF11-203ENST00000530304 JAK2O60674 1132 aa23.06■■□□□ 1.28
PCF11-203ENST00000530304 PTCD1O75127 700 aaKnown RBP23.06■■□□□ 1.28
PCF11-203ENST00000530304 FAM200AQ8TCP9 573 aa23.06■■□□□ 1.28
PCF11-203ENST00000530304 LEO1Q8WVC0 666 aaPredicted RBP23.06■■□□□ 1.28
PCF11-203ENST00000530304 DACT1Q9NYF0 836 aa23.06■■□□□ 1.28
PCF11-203ENST00000530304 ZNF609O15014 1411 aa23.06■■□□□ 1.28
PCF11-203ENST00000530304 TYRO3Q06418 890 aa23.06■■□□□ 1.28
PCF11-203ENST00000530304 SPTLC3Q9NUV7 552 aa23.06■■□□□ 1.28
PCF11-203ENST00000530304 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.06■■□□□ 1.281e-6■■■■□ 23.3
PCF11-203ENST00000530304 MRVI1Q9Y6F6 885 aa23.06■■□□□ 1.28
PCF11-203ENST00000530304 MEGF6O75095 1541 aa23.05■■□□□ 1.28
PCF11-203ENST00000530304 A0A087WZG4 1122 aa23.05■■□□□ 1.28
PCF11-203ENST00000530304 MAP7D2Q96T17 732 aa23.05■■□□□ 1.28
PCF11-203ENST00000530304 U3KPZ7 1027 aaPredicted RBP23.05■■□□□ 1.28
PCF11-203ENST00000530304 C1orf167Q5SNV9 1468 aa23.05■■□□□ 1.28
PCF11-203ENST00000530304 MCMDC2Q4G0Z9 681 aa23.05■■□□□ 1.28
PCF11-203ENST00000530304 Q6ZUG5 572 aa23.05■■□□□ 1.28
PCF11-203ENST00000530304 PROSER2Q86WR7 435 aaPredicted RBP23.05■■□□□ 1.28
PCF11-203ENST00000530304 HAUS7Q99871 368 aa23.05■■□□□ 1.28
PCF11-203ENST00000530304 TNMDQ9H2S6 317 aa23.05■■□□□ 1.28
PCF11-203ENST00000530304 CYP21A2P08686 494 aa23.04■■□□□ 1.28
PCF11-203ENST00000530304 CKAP2LQ8IYA6 745 aa23.04■■□□□ 1.28
PCF11-203ENST00000530304 AFDNP55196 1824 aaKnown RBP23.04■■□□□ 1.28
PCF11-203ENST00000530304 RFX7Q2KHR2 1363 aa23.04■■□□□ 1.28
PCF11-203ENST00000530304 MYRIPQ8NFW9 859 aa23.04■■□□□ 1.28
PCF11-203ENST00000530304 FMNL2Q96PY5 1086 aa23.04■■□□□ 1.28
PCF11-203ENST00000530304 MST1RQ04912 1400 aa23.03■■□□□ 1.28
PCF11-203ENST00000530304 DDX46Q7L014 1031 aaKnown RBP23.03■■□□□ 1.28
PCF11-203ENST00000530304 SPC24Q8NBT2 197 aa23.03■■□□□ 1.28
PCF11-203ENST00000530304 DCAF5Q96JK2 942 aa23.03■■□□□ 1.28
PCF11-203ENST00000530304 VSIG10Q8N0Z9 540 aa23.03■■□□□ 1.28
PCF11-203ENST00000530304 KCNF1Q9H3M0 494 aa23.03■■□□□ 1.28
PCF11-203ENST00000530304 HSP90B1P14625 803 aaKnown RBP23.02■■□□□ 1.28
PCF11-203ENST00000530304 PRIMPOLQ96LW4 560 aa23.02■■□□□ 1.28
PCF11-203ENST00000530304 CYP27B1O15528 508 aa23.02■■□□□ 1.28
PCF11-203ENST00000530304 TPM3P06753 285 aa23.02■■□□□ 1.28
PCF11-203ENST00000530304 CSB-PGBD3P0DP91 1061 aa23.02■■□□□ 1.28
PCF11-203ENST00000530304 LUZP1Q86V48 1076 aa23.02■■□□□ 1.28
PCF11-203ENST00000530304 BRF1Q92994 677 aa23.02■■□□□ 1.28
PCF11-203ENST00000530304 DDX19AQ9NUU7 478 aaKnown RBP23.02■■□□□ 1.28
PCF11-203ENST00000530304 CASP7P55210 303 aa23.01■■□□□ 1.27
PCF11-203ENST00000530304 KIF1AQ12756 1690 aa23.01■■□□□ 1.27
PCF11-203ENST00000530304 KIAA1524Q8TCG1 905 aa23.01■■□□□ 1.27
PCF11-203ENST00000530304 PGBD1Q96JS3 809 aa23.01■■□□□ 1.27
PCF11-203ENST00000530304 ALS2Q96Q42 1657 aa23.01■■□□□ 1.27
PCF11-203ENST00000530304 NR1I2O75469 434 aa23■■□□□ 1.27
PCF11-203ENST00000530304 RESTQ13127 1097 aa23■■□□□ 1.27
PCF11-203ENST00000530304 ANO6Q4KMQ2 910 aa23■■□□□ 1.27
PCF11-203ENST00000530304 LMBR1LQ6UX01 489 aa23■■□□□ 1.27
PCF11-203ENST00000530304 DDX11Q96FC9 970 aa23■■□□□ 1.27
PCF11-203ENST00000530304 CCDC9Q9Y3X0 531 aaKnown RBP23■■□□□ 1.27
PCF11-203ENST00000530304 GOLGA6L6A8MZA4 724 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms