RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 SEMA6BQ9H3T3 888 aa7.47□□□□□ -1.21
USP48-211ENST00000526044 AVENQ9NQS1 362 aaPredicted RBP7.47□□□□□ -1.21
USP48-211ENST00000526044 CFTRP13569 1480 aa7.47□□□□□ -1.21
USP48-211ENST00000526044 LAMC3Q9Y6N6 1575 aa7.46□□□□□ -1.21
USP48-211ENST00000526044 NESP48681 1621 aa7.46□□□□□ -1.21
USP48-211ENST00000526044 OPLAHO14841 1288 aa7.46□□□□□ -1.22
USP48-211ENST00000526044 SPEM2Q0P670 501 aa7.46□□□□□ -1.22
USP48-211ENST00000526044 NEUROD1Q13562 356 aa7.46□□□□□ -1.22
USP48-211ENST00000526044 ZMYM1Q5SVZ6 1142 aa7.46□□□□□ -1.22
USP48-211ENST00000526044 ETFBKMTQ8IXQ9 262 aa7.46□□□□□ -1.22
USP48-211ENST00000526044 ABTB2Q8N961 1025 aa7.46□□□□□ -1.22
USP48-211ENST00000526044 HELQQ8TDG4 1101 aa7.46□□□□□ -1.22
USP48-211ENST00000526044 C11orf16Q9NQ32 467 aa7.46□□□□□ -1.22
USP48-211ENST00000526044 ZNF468Q5VIY5 522 aaPredicted RBP7.45□□□□□ -1.22
USP48-211ENST00000526044 SLC30A3Q99726 388 aa7.45□□□□□ -1.22
USP48-211ENST00000526044 EFCC1Q9HA90 598 aa7.45□□□□□ -1.22
USP48-211ENST00000526044 FAM13BQ9NYF5 915 aa7.45□□□□□ -1.22
USP48-211ENST00000526044 EPXP11678 715 aa7.44□□□□□ -1.22
USP48-211ENST00000526044 ADH6P28332 368 aa7.44□□□□□ -1.22
USP48-211ENST00000526044 PCBP4P57723 403 aaKnown RBP7.44□□□□□ -1.22
USP48-211ENST00000526044 CCINQ13939 588 aa7.44□□□□□ -1.22
USP48-211ENST00000526044 FAM26DQ5JW98 314 aa7.44□□□□□ -1.22
USP48-211ENST00000526044 RTCBQ9Y3I0 505 aaKnown RBP7.44□□□□□ -1.22
USP48-211ENST00000526044 PDS5BQ9NTI5 1447 aa7.44□□□□□ -1.22
USP48-211ENST00000526044 NEURL1BA8MQ27 555 aa7.43□□□□□ -1.22
USP48-211ENST00000526044 ZBTB39O15060 712 aa7.43□□□□□ -1.22
USP48-211ENST00000526044 BRD1O95696 1058 aa7.43□□□□□ -1.22
USP48-211ENST00000526044 ZAP70P43403 619 aa7.43□□□□□ -1.22
USP48-211ENST00000526044 CHRNA4P43681 627 aa7.43□□□□□ -1.22
USP48-211ENST00000526044 DOC2BQ14184 412 aa7.43□□□□□ -1.22
USP48-211ENST00000526044 SYT9Q86SS6 491 aa7.43□□□□□ -1.22
USP48-211ENST00000526044 RGL4Q8IZJ4 473 aa7.43□□□□□ -1.22
USP48-211ENST00000526044 GSX2Q9BZM3 304 aa7.43□□□□□ -1.22
USP48-211ENST00000526044 KLF15Q9UIH9 416 aa7.43□□□□□ -1.22
USP48-211ENST00000526044 PRDM2Q13029 1718 aa7.42□□□□□ -1.22
USP48-211ENST00000526044 SCO2A0A1W2PP80 73 aa7.42□□□□□ -1.22
USP48-211ENST00000526044 SIN3BO75182 1162 aa7.42□□□□□ -1.22
USP48-211ENST00000526044 ABL1P00519 1130 aa7.42□□□□□ -1.22
USP48-211ENST00000526044 HOXB4P17483 251 aaPredicted RBP7.42□□□□□ -1.22
USP48-211ENST00000526044 GRNP28799 593 aaKnown RBP7.42□□□□□ -1.22
USP48-211ENST00000526044 GATA4P43694 442 aa7.42□□□□□ -1.22
USP48-211ENST00000526044 FKBP4Q02790 459 aaKnown RBP eCLIP7.42□□□□□ -1.22
USP48-211ENST00000526044 SF3B2Q13435 895 aaKnown RBP7.42□□□□□ -1.22
USP48-211ENST00000526044 CMTR1Q8N1G2 835 aaKnown RBP7.42□□□□□ -1.22
USP48-211ENST00000526044 PIK3R5Q8WYR1 880 aa7.42□□□□□ -1.22
USP48-211ENST00000526044 PNMA5Q96PV4 448 aa7.42□□□□□ -1.22
USP48-211ENST00000526044 DGKGP49619 791 aa7.41□□□□□ -1.22
USP48-211ENST00000526044 NOM1Q5C9Z4 860 aaKnown RBP7.41□□□□□ -1.22
USP48-211ENST00000526044 ALKBH2Q6NS38 261 aa7.41□□□□□ -1.22
USP48-211ENST00000526044 RAB44Q7Z6P3 723 aaPredicted RBP7.41□□□□□ -1.22
USP48-211ENST00000526044 TXNDC2Q86VQ3 553 aa7.41□□□□□ -1.22
USP48-211ENST00000526044 CCER1Q8TC90 406 aaPredicted RBP7.41□□□□□ -1.22
USP48-211ENST00000526044 BHMTQ93088 406 aa7.41□□□□□ -1.22
USP48-211ENST00000526044 KRTAP9-2Q9BYQ4 174 aa7.41□□□□□ -1.22
USP48-211ENST00000526044 EGFL7Q9UHF1 273 aa7.41□□□□□ -1.22
USP48-211ENST00000526044 USP20Q9Y2K6 914 aa7.41□□□□□ -1.22
USP48-211ENST00000526044 FAM13AO94988 1023 aa7.4□□□□□ -1.22
USP48-211ENST00000526044 EGFRP00533 1210 aa7.4□□□□□ -1.22
USP48-211ENST00000526044 NPR3P17342 541 aa7.4□□□□□ -1.22
USP48-211ENST00000526044 MTMR3Q13615 1198 aa7.4□□□□□ -1.22
USP48-211ENST00000526044 CHSY3Q70JA7 882 aa7.4□□□□□ -1.22
USP48-211ENST00000526044 FCHSD1Q86WN1 690 aa7.4□□□□□ -1.22
USP48-211ENST00000526044 GPR152Q8TDT2 470 aa7.4□□□□□ -1.22
USP48-211ENST00000526044 TRAIPQ9BWF2 469 aa7.4□□□□□ -1.22
USP48-211ENST00000526044 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.4□□□□□ -1.22
USP48-211ENST00000526044 FANCD2Q9BXW9 1451 aa7.4□□□□□ -1.22
USP48-211ENST00000526044 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.39□□□□□ -1.23
USP48-211ENST00000526044 XYLBO75191 536 aa7.39□□□□□ -1.23
USP48-211ENST00000526044 MPSTP25325 297 aa7.39□□□□□ -1.23
USP48-211ENST00000526044 SERPINB4P48594 390 aa7.39□□□□□ -1.23
USP48-211ENST00000526044 ZNF211Q13398 564 aaPredicted RBP7.39□□□□□ -1.23
USP48-211ENST00000526044 TNFRSF25Q93038 417 aa7.39□□□□□ -1.23
USP48-211ENST00000526044 ANO2Q9NQ90 1003 aa7.39□□□□□ -1.23
USP48-211ENST00000526044 FNDC3AQ9Y2H6 1198 aaKnown RBP7.39□□□□□ -1.23
USP48-211ENST00000526044 KCNMB2Q9Y691 235 aa7.39□□□□□ -1.23
USP48-211ENST00000526044 ERCC6Q03468 1493 aa7.38□□□□□ -1.23
USP48-211ENST00000526044 ELOA3CA0A087WX78 387 aaPredicted RBP7.38□□□□□ -1.23
USP48-211ENST00000526044 SPDYE3A6NKU9 549 aa7.38□□□□□ -1.23
USP48-211ENST00000526044 ELOA3DA6NLF2 546 aaPredicted RBP7.38□□□□□ -1.23
USP48-211ENST00000526044 ADARB2-AS1A8MUL3 147 aa7.38□□□□□ -1.23
USP48-211ENST00000526044 ICMTO60725 284 aa7.38□□□□□ -1.23
USP48-211ENST00000526044 SASH3O75995 380 aa7.38□□□□□ -1.23
USP48-211ENST00000526044 NFKB1P19838 968 aa7.38□□□□□ -1.23
USP48-211ENST00000526044 ALAS2P22557 587 aa7.38□□□□□ -1.23
USP48-211ENST00000526044 TARSP26639 723 aaKnown RBP7.38□□□□□ -1.23
USP48-211ENST00000526044 EIF1AXP47813 144 aaKnown RBP7.38□□□□□ -1.23
USP48-211ENST00000526044 AAMPQ13685 434 aa7.38□□□□□ -1.23
USP48-211ENST00000526044 ELOA3BQ3SY89 546 aa7.38□□□□□ -1.23
USP48-211ENST00000526044 ATCAYQ86WG3 371 aa7.38□□□□□ -1.23
USP48-211ENST00000526044 ELOA3Q8NG57 546 aa7.38□□□□□ -1.23
USP48-211ENST00000526044 KRTAP9-6A0A140TA67 174 aa7.37□□□□□ -1.23
USP48-211ENST00000526044 MAP3K6O95382 1288 aa7.37□□□□□ -1.23
USP48-211ENST00000526044 RPLP1P05386 114 aaKnown RBP7.37□□□□□ -1.23
USP48-211ENST00000526044 SPATA31C1P0DKV0 1188 aa7.37□□□□□ -1.23
USP48-211ENST00000526044 PCSK2P16519 638 aa7.37□□□□□ -1.23
USP48-211ENST00000526044 KRT25Q7Z3Z0 450 aa7.37□□□□□ -1.23
USP48-211ENST00000526044 KIF21AQ7Z4S6 1674 aa7.37□□□□□ -1.23
USP48-211ENST00000526044 CEP164Q9UPV0 1460 aa7.36□□□□□ -1.23
USP48-211ENST00000526044 UBAP1LF5GYI3 381 aa7.36□□□□□ -1.23
USP48-211ENST00000526044 RARAP10276 462 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms