RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 CHRDQ9H2X0 955 aa7.42□□□□□ -1.22
CD44-220ENST00000525688 SENP2Q9HC62 589 aa7.42□□□□□ -1.22
CD44-220ENST00000525688 NDFIP2Q9NV92 336 aa7.42□□□□□ -1.22
CD44-220ENST00000525688 ABI2Q9NYB9 513 aaPredicted RBP7.42□□□□□ -1.22
CD44-220ENST00000525688 DACH1Q9UI36 760 aa7.42□□□□□ -1.22
CD44-220ENST00000525688 SPG7Q9UQ90 795 aa7.42□□□□□ -1.22
CD44-220ENST00000525688 TNP2Q05952 138 aa7.41□□□□□ -1.22
CD44-220ENST00000525688 USPL1Q5W0Q7 1092 aa7.41□□□□□ -1.22
CD44-220ENST00000525688 TRIM22Q8IYM9 498 aa7.41□□□□□ -1.22
CD44-220ENST00000525688 GSX2Q9BZM3 304 aa7.41□□□□□ -1.22
CD44-220ENST00000525688 EFCC1Q9HA90 598 aa7.41□□□□□ -1.22
CD44-220ENST00000525688 METTL5Q9NRN9 209 aaKnown RBP7.41□□□□□ -1.22
CD44-220ENST00000525688 VTI1BQ9UEU0 232 aa7.41□□□□□ -1.22
CD44-220ENST00000525688 SOBPA7XYQ1 873 aa7.4□□□□□ -1.22
CD44-220ENST00000525688 VEGFBP49765 207 aa7.4□□□□□ -1.22
CD44-220ENST00000525688 SFSWAPQ12872 951 aaKnown RBP7.4□□□□□ -1.22
CD44-220ENST00000525688 DBN1Q16643 649 aa7.4□□□□□ -1.22
CD44-220ENST00000525688 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.4□□□□□ -1.22
CD44-220ENST00000525688 GALNT12Q8IXK2 581 aa7.4□□□□□ -1.22
CD44-220ENST00000525688 TMEM87AQ8NBN3 555 aa7.4□□□□□ -1.22
CD44-220ENST00000525688 NUCKS1Q9H1E3 243 aaKnown RBP7.4□□□□□ -1.22
CD44-220ENST00000525688 CNTN3Q9P232 1028 aa7.4□□□□□ -1.22
CD44-220ENST00000525688 LOC105371045A0A1W2PR82 267 aa7.39□□□□□ -1.23
CD44-220ENST00000525688 EIF5BO60841 1220 aaKnown RBP7.39□□□□□ -1.23
CD44-220ENST00000525688 MAPTP10636 758 aaKnown RBP7.39□□□□□ -1.23
CD44-220ENST00000525688 CCINQ13939 588 aa7.39□□□□□ -1.23
CD44-220ENST00000525688 RIPOR1Q6ZS17 1223 aa7.39□□□□□ -1.23
CD44-220ENST00000525688 CCDC155Q8N6L0 562 aa7.39□□□□□ -1.23
CD44-220ENST00000525688 C1orf127Q8N9H9 656 aa7.39□□□□□ -1.23
CD44-220ENST00000525688 CRELD1Q96HD1 420 aa7.39□□□□□ -1.23
CD44-220ENST00000525688 TRIM47Q96LD4 638 aa7.39□□□□□ -1.23
CD44-220ENST00000525688 C8orf37Q96NL8 207 aa7.39□□□□□ -1.23
CD44-220ENST00000525688 SRCIN1Q9C0H9 1055 aa7.39□□□□□ -1.23
CD44-220ENST00000525688 NLRP2Q9NX02 1062 aa7.39□□□□□ -1.23
CD44-220ENST00000525688 EREGO14944 169 aa7.38□□□□□ -1.23
CD44-220ENST00000525688 BNIP3LO60238 219 aa7.38□□□□□ -1.23
CD44-220ENST00000525688 CTSHP09668 335 aa7.38□□□□□ -1.23
CD44-220ENST00000525688 EIF4BP23588 611 aaKnown RBP7.38□□□□□ -1.23
CD44-220ENST00000525688 HDLBPQ00341 1268 aaKnown RBP7.38□□□□□ -1.23
CD44-220ENST00000525688 FANCCQ00597 558 aa7.38□□□□□ -1.23
CD44-220ENST00000525688 TTC39BQ5VTQ0 682 aaPredicted RBP7.38□□□□□ -1.23
CD44-220ENST00000525688 EPS8L3Q8TE67 593 aaKnown RBP7.38□□□□□ -1.23
CD44-220ENST00000525688 OSBPL7Q9BZF2 842 aa7.38□□□□□ -1.23
CD44-220ENST00000525688 C12orf49Q9H741 205 aa7.38□□□□□ -1.23
CD44-220ENST00000525688 KHNYNO15037 678 aaKnown RBP7.37□□□□□ -1.23
CD44-220ENST00000525688 SASH3O75995 380 aa7.37□□□□□ -1.23
CD44-220ENST00000525688 CES1P23141 567 aa7.37□□□□□ -1.23
CD44-220ENST00000525688 IRS1P35568 1242 aa7.37□□□□□ -1.23
CD44-220ENST00000525688 PI16Q6UXB8 463 aa7.37□□□□□ -1.23
CD44-220ENST00000525688 METTL16Q86W50 562 aaKnown RBP7.37□□□□□ -1.23
CD44-220ENST00000525688 OR13H1Q8NG92 308 aa7.37□□□□□ -1.23
CD44-220ENST00000525688 NPHS2Q9NP85 383 aa7.37□□□□□ -1.23
CD44-220ENST00000525688 STRN4Q9NRL3 753 aa7.37□□□□□ -1.23
CD44-220ENST00000525688 CUEDC1Q9NWM3 386 aaPredicted RBP7.37□□□□□ -1.23
CD44-220ENST00000525688 HCN2Q9UL51 889 aa7.37□□□□□ -1.23
CD44-220ENST00000525688 DCDC2BA2VCK2 349 aa7.36□□□□□ -1.23
CD44-220ENST00000525688 MMP20O60882 483 aa7.36□□□□□ -1.23
CD44-220ENST00000525688 MAP3K6O95382 1288 aa7.36□□□□□ -1.23
CD44-220ENST00000525688 HOXD8P13378 290 aaPredicted RBP7.36□□□□□ -1.23
CD44-220ENST00000525688 TARSP26639 723 aaKnown RBP7.36□□□□□ -1.23
CD44-220ENST00000525688 SOX18P35713 384 aa7.36□□□□□ -1.23
CD44-220ENST00000525688 FAM182BQ5T319 152 aa7.36□□□□□ -1.23
CD44-220ENST00000525688 KIAA0319Q5VV43 1072 aa7.36□□□□□ -1.23
CD44-220ENST00000525688 SUV39H2Q9H5I1 410 aa7.36□□□□□ -1.23
CD44-220ENST00000525688 MARK1Q9P0L2 795 aa7.36□□□□□ -1.23
CD44-220ENST00000525688 FAM8A1Q9UBU6 413 aa7.36□□□□□ -1.23
CD44-220ENST00000525688 POTECB2RU33 542 aa7.35□□□□□ -1.23
CD44-220ENST00000525688 POLR3DP05423 398 aaPredicted RBP7.35□□□□□ -1.23
CD44-220ENST00000525688 ITGA6P23229 1130 aa7.35□□□□□ -1.23
CD44-220ENST00000525688 ZNF76P36508 570 aa7.35□□□□□ -1.23
CD44-220ENST00000525688 ZC3H6P61129 1189 aaKnown RBP7.35□□□□□ -1.23
CD44-220ENST00000525688 RNF34Q969K3 372 aa7.35□□□□□ -1.23
CD44-220ENST00000525688 ZNF837Q96EG3 531 aaPredicted RBP7.35□□□□□ -1.23
CD44-220ENST00000525688 ZFATQ9P243 1243 aa7.35□□□□□ -1.23
CD44-220ENST00000525688 SALL4Q9UJQ4 1053 aa7.35□□□□□ -1.23
CD44-220ENST00000525688 ATXN7L1Q9ULK2 861 aaPredicted RBP7.35□□□□□ -1.23
CD44-220ENST00000525688 USP31Q70CQ4 1352 aa7.34□□□□□ -1.23
CD44-220ENST00000525688 IGSF3O75054 1194 aa7.34□□□□□ -1.23
CD44-220ENST00000525688 RARAP10276 462 aa7.34□□□□□ -1.23
CD44-220ENST00000525688 EDN3P14138 238 aa7.34□□□□□ -1.23
CD44-220ENST00000525688 ERCC5P28715 1186 aaPredicted RBP7.34□□□□□ -1.23
CD44-220ENST00000525688 SPEM2Q0P670 501 aa7.34□□□□□ -1.23
CD44-220ENST00000525688 ABHD17AQ96GS6 310 aa7.34□□□□□ -1.23
CD44-220ENST00000525688 TLR7Q9NYK1 1049 aaKnown RBP7.34□□□□□ -1.23
CD44-220ENST00000525688 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.34□□□□□ -1.23
CD44-220ENST00000525688 PHF20L1A8MW92 1017 aa7.33□□□□□ -1.24
CD44-220ENST00000525688 KIF4AO95239 1232 aa7.33□□□□□ -1.24
CD44-220ENST00000525688 CYP2E1P05181 493 aaPredicted RBP7.33□□□□□ -1.24
CD44-220ENST00000525688 ST13P50502 369 aaKnown RBP7.33□□□□□ -1.24
CD44-220ENST00000525688 RAD51AP2Q09MP3 1159 aa7.33□□□□□ -1.24
CD44-220ENST00000525688 GRM2Q14416 872 aa7.33□□□□□ -1.24
CD44-220ENST00000525688 PEAR1Q5VY43 1037 aaPredicted RBP7.33□□□□□ -1.24
CD44-220ENST00000525688 KRT25Q7Z3Z0 450 aa7.33□□□□□ -1.24
CD44-220ENST00000525688 NT5DC4Q86YG4 428 aa7.33□□□□□ -1.24
CD44-220ENST00000525688 PNMA5Q96PV4 448 aa7.33□□□□□ -1.24
CD44-220ENST00000525688 SLC30A3Q99726 388 aa7.33□□□□□ -1.24
CD44-220ENST00000525688 BCO2Q9BYV7 579 aa7.33□□□□□ -1.24
CD44-220ENST00000525688 IRX2Q9BZI1 471 aaPredicted RBP7.33□□□□□ -1.24
CD44-220ENST00000525688 GMPR2Q9P2T1 348 aaKnown RBP7.33□□□□□ -1.24
CD44-220ENST00000525688 PHF24Q9UPV7 400 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 164.1 ms