RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 PAG1Q9NWQ8 432 aa13.59□□□□□ -0.23
SYNPO-204ENST00000519664 METAP2P50579 478 aaKnown RBP eCLIP13.59□□□□□ -0.23
SYNPO-204ENST00000519664 ZNF790Q6PG37 636 aa13.59□□□□□ -0.23
SYNPO-204ENST00000519664 NCOA7Q8NI08 942 aa13.59□□□□□ -0.23
SYNPO-204ENST00000519664 TANGO6Q9C0B7 1094 aa13.59□□□□□ -0.23
SYNPO-204ENST00000519664 SNX14Q9Y5W7 946 aa13.59□□□□□ -0.23
SYNPO-204ENST00000519664 INSRP06213 1382 aa13.59□□□□□ -0.23
SYNPO-204ENST00000519664 CAVIN4Q5BKX8 364 aa13.59□□□□□ -0.23
SYNPO-204ENST00000519664 ZSCAN29Q8IWY8 852 aaPredicted RBP13.59□□□□□ -0.23
SYNPO-204ENST00000519664 ZBTB9Q96C00 473 aa13.59□□□□□ -0.23
SYNPO-204ENST00000519664 MKNK2Q9HBH9 465 aa13.59□□□□□ -0.23
SYNPO-204ENST00000519664 ABCC4O15439 1325 aa13.59□□□□□ -0.23
SYNPO-204ENST00000519664 CCDC171Q6TFL3 1326 aa13.59□□□□□ -0.23
SYNPO-204ENST00000519664 SPDYE4A6NLX3 237 aa13.58□□□□□ -0.23
SYNPO-204ENST00000519664 SGSM2O43147 1006 aa13.58□□□□□ -0.23
SYNPO-204ENST00000519664 SLC5A1P13866 664 aa13.58□□□□□ -0.23
SYNPO-204ENST00000519664 MCM5P33992 734 aa13.58□□□□□ -0.23
SYNPO-204ENST00000519664 RBM5P52756 815 aaKnown RBP eCLIP13.58□□□□□ -0.23
SYNPO-204ENST00000519664 SOGA3Q5TF21 947 aa13.58□□□□□ -0.23
SYNPO-204ENST00000519664 LUZP1Q86V48 1076 aa13.58□□□□□ -0.23
SYNPO-204ENST00000519664 SMAP1Q8IYB5 467 aaPredicted RBP13.58□□□□□ -0.23
SYNPO-204ENST00000519664 UBXN4Q92575 508 aa13.58□□□□□ -0.23
SYNPO-204ENST00000519664 ZKSCAN5Q9Y2L8 839 aa13.58□□□□□ -0.23
SYNPO-204ENST00000519664 TTC41PQ6P2S7 1318 aa13.58□□□□□ -0.24
SYNPO-204ENST00000519664 SIRT2Q8IXJ6 389 aa13.58□□□□□ -0.24
SYNPO-204ENST00000519664 A1BGP04217 495 aa13.58□□□□□ -0.24
SYNPO-204ENST00000519664 NOLC1Q14978 699 aaKnown RBP eCLIP13.58□□□□□ -0.24
SYNPO-204ENST00000519664 RUFY3Q7L099 469 aa13.58□□□□□ -0.24
SYNPO-204ENST00000519664 SUCLG2Q96I99 432 aa13.58□□□□□ -0.24
SYNPO-204ENST00000519664 ANKIB1Q9P2G1 1089 aa13.58□□□□□ -0.24
SYNPO-204ENST00000519664 CBFA2T2O43439 604 aa13.57□□□□□ -0.24
SYNPO-204ENST00000519664 GAS2L3Q86XJ1 694 aa13.57□□□□□ -0.24
SYNPO-204ENST00000519664 WASF1Q92558 559 aa13.57□□□□□ -0.24
SYNPO-204ENST00000519664 NCOA5Q9HCD5 579 aaKnown RBP13.57□□□□□ -0.24
SYNPO-204ENST00000519664 BCORL1Q5H9F3 1711 aa13.57□□□□□ -0.24
SYNPO-204ENST00000519664 TOP1P11387 765 aaKnown RBP13.57□□□□□ -0.24
SYNPO-204ENST00000519664 NOM1Q5C9Z4 860 aaKnown RBP13.57□□□□□ -0.24
SYNPO-204ENST00000519664 C17orf53Q8N3J3 647 aaPredicted RBP13.57□□□□□ -0.24
SYNPO-204ENST00000519664 INTS4Q96HW7 963 aaKnown RBP13.57□□□□□ -0.24
SYNPO-204ENST00000519664 DACH1Q9UI36 760 aa13.57□□□□□ -0.24
SYNPO-204ENST00000519664 RTL1A6NKG5 1358 aa13.57□□□□□ -0.24
SYNPO-204ENST00000519664 SSRP1Q08945 709 aaKnown RBP13.57□□□□□ -0.24
SYNPO-204ENST00000519664 IQCA1Q86XH1 822 aa13.57□□□□□ -0.24
SYNPO-204ENST00000519664 UNC5CLQ8IV45 518 aa13.57□□□□□ -0.24
SYNPO-204ENST00000519664 ZNF496Q96IT1 587 aaPredicted RBP13.57□□□□□ -0.24
SYNPO-204ENST00000519664 IL15P40933 162 aaPredicted RBP13.57□□□□□ -0.24
SYNPO-204ENST00000519664 CTCFLQ8NI51 663 aaPredicted RBP13.57□□□□□ -0.24
SYNPO-204ENST00000519664 KIF18AQ8NI77 898 aa13.57□□□□□ -0.24
SYNPO-204ENST00000519664 FAM200AQ8TCP9 573 aa13.57□□□□□ -0.24
SYNPO-204ENST00000519664 METP08581 1390 aa13.56□□□□□ -0.24
SYNPO-204ENST00000519664 RUFY1Q96T51 708 aa13.56□□□□□ -0.24
SYNPO-204ENST00000519664 LMBRD1Q9NUN5 540 aa13.56□□□□□ -0.24
SYNPO-204ENST00000519664 TMEM63CQ9P1W3 806 aa13.56□□□□□ -0.24
SYNPO-204ENST00000519664 TYRO3Q06418 890 aa13.56□□□□□ -0.24
SYNPO-204ENST00000519664 ARHGAP29Q52LW3 1261 aa13.56□□□□□ -0.24
SYNPO-204ENST00000519664 OTUD7BQ6GQQ9 843 aa13.56□□□□□ -0.24
SYNPO-204ENST00000519664 MFSD6Q6ZSS7 791 aa13.56□□□□□ -0.24
SYNPO-204ENST00000519664 DEF6Q9H4E7 631 aa13.56□□□□□ -0.24
SYNPO-204ENST00000519664 ZNHIT6Q9NWK9 470 aaKnown RBP13.56□□□□□ -0.24
SYNPO-204ENST00000519664 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.56□□□□□ -0.24
SYNPO-204ENST00000519664 V9GYY5 206 aaPredicted RBP13.56□□□□□ -0.24
SYNPO-204ENST00000519664 STX1AQ16623 288 aa13.56□□□□□ -0.24
SYNPO-204ENST00000519664 ALG1Q9BT22 464 aa13.56□□□□□ -0.24
SYNPO-204ENST00000519664 VAT1LQ9HCJ6 419 aa13.56□□□□□ -0.24
SYNPO-204ENST00000519664 CGNQ9P2M7 1197 aaKnown RBP13.56□□□□□ -0.24
SYNPO-204ENST00000519664 SBNO1A3KN83 1393 aa13.56□□□□□ -0.24
SYNPO-204ENST00000519664 CCDC196A0A1B0GTZ2 297 aa13.56□□□□□ -0.24
SYNPO-204ENST00000519664 ERICH4A6NGS2 130 aa13.56□□□□□ -0.24
SYNPO-204ENST00000519664 PRC1O43663 620 aa13.56□□□□□ -0.24
SYNPO-204ENST00000519664 LMOD1P29536 600 aaPredicted RBP13.56□□□□□ -0.24
SYNPO-204ENST00000519664 EIF4A1P60842 406 aaKnown RBP13.56□□□□□ -0.24
SYNPO-204ENST00000519664 DZIP1Q86YF9 867 aaKnown RBP13.56□□□□□ -0.24
SYNPO-204ENST00000519664 ZSWIM4Q9H7M6 989 aa13.56□□□□□ -0.24
SYNPO-204ENST00000519664 CTAGE5O15320 804 aa13.55□□□□□ -0.24
SYNPO-204ENST00000519664 CCP110O43303 1012 aa13.55□□□□□ -0.24
SYNPO-204ENST00000519664 EIF5P55010 431 aaKnown RBP13.55□□□□□ -0.24
SYNPO-204ENST00000519664 ZSCAN16Q9H4T2 348 aaPredicted RBP13.55□□□□□ -0.24
SYNPO-204ENST00000519664 ABCA8O94911 1581 aa13.55□□□□□ -0.24
SYNPO-204ENST00000519664 ADGBQ8N7X0 1667 aa13.55□□□□□ -0.24
SYNPO-204ENST00000519664 STIM1Q13586 685 aa13.55□□□□□ -0.24
SYNPO-204ENST00000519664 C19orf44Q9H6X5 657 aa13.55□□□□□ -0.24
SYNPO-204ENST00000519664 PLEKHG3A1L390 1219 aa13.55□□□□□ -0.24
SYNPO-204ENST00000519664 PTPDC1A2A3K4 754 aa13.55□□□□□ -0.24
SYNPO-204ENST00000519664 EPB41L2O43491 1005 aaKnown RBP13.55□□□□□ -0.24
SYNPO-204ENST00000519664 MIGA1Q8NAN2 632 aa13.55□□□□□ -0.24
SYNPO-204ENST00000519664 JAG2Q9Y219 1238 aa13.55□□□□□ -0.24
SYNPO-204ENST00000519664 ARHGEF5Q12774 1597 aa13.55□□□□□ -0.24
SYNPO-204ENST00000519664 ZPR1O75312 459 aa13.54□□□□□ -0.24
SYNPO-204ENST00000519664 SETQ01105 290 aaPredicted RBP13.54□□□□□ -0.24
SYNPO-204ENST00000519664 AOPEPQ8N6M6 819 aa13.54□□□□□ -0.24
SYNPO-204ENST00000519664 ZBTB43O43298 467 aa13.54□□□□□ -0.24
SYNPO-204ENST00000519664 PTGS1P23219 599 aa13.54□□□□□ -0.24
SYNPO-204ENST00000519664 NLRP5P59047 1200 aa13.54□□□□□ -0.24
SYNPO-204ENST00000519664 CWC15Q9P013 229 aaKnown RBP13.54□□□□□ -0.24
SYNPO-204ENST00000519664 PPP1R1BQ9UD71 204 aaPredicted RBP13.54□□□□□ -0.24
SYNPO-204ENST00000519664 PATL2C9JE40 543 aaKnown RBP13.54□□□□□ -0.24
SYNPO-204ENST00000519664 SYKP43405 635 aa13.54□□□□□ -0.24
SYNPO-204ENST00000519664 ENOX2Q16206 610 aaKnown RBP13.54□□□□□ -0.24
SYNPO-204ENST00000519664 UVSSAQ2YD98 709 aa13.54□□□□□ -0.24
SYNPO-204ENST00000519664 TSPYL1Q9H0U9 437 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms