RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 NUTM1Q86Y26 1132 aa16.19■□□□□ 0.18
LIMCH1-220ENST00000514190 CD2APQ9Y5K6 639 aa16.19■□□□□ 0.18
LIMCH1-220ENST00000514190 SERPINB2P05120 415 aa16.18■□□□□ 0.18
LIMCH1-220ENST00000514190 HCLS1P14317 486 aaPredicted RBP16.18■□□□□ 0.18
LIMCH1-220ENST00000514190 GTF2E1P29083 439 aaPredicted RBP16.18■□□□□ 0.18
LIMCH1-220ENST00000514190 DDR1Q08345 913 aa16.18■□□□□ 0.18
LIMCH1-220ENST00000514190 GCC1Q96CN9 775 aa16.18■□□□□ 0.18
LIMCH1-220ENST00000514190 POLRMTO00411 1230 aaKnown RBP16.17■□□□□ 0.18
LIMCH1-220ENST00000514190 MMP10P09238 476 aa16.17■□□□□ 0.18
LIMCH1-220ENST00000514190 CTSWP56202 376 aa16.17■□□□□ 0.18
LIMCH1-220ENST00000514190 TTLL11Q8NHH1 800 aa16.17■□□□□ 0.18
LIMCH1-220ENST00000514190 YY1P25490 414 aa16.16■□□□□ 0.18
LIMCH1-220ENST00000514190 RFX5P48382 616 aaPredicted RBP16.16■□□□□ 0.18
LIMCH1-220ENST00000514190 GPR162Q16538 588 aa16.16■□□□□ 0.18
LIMCH1-220ENST00000514190 PRR5LQ6MZQ0 368 aa16.16■□□□□ 0.18
LIMCH1-220ENST00000514190 CNBD1Q8NA66 436 aa16.16■□□□□ 0.18
LIMCH1-220ENST00000514190 NOP58Q9Y2X3 529 aaKnown RBP16.16■□□□□ 0.18
LIMCH1-220ENST00000514190 CHMP3Q9Y3E7 222 aa16.15■□□□□ 0.18
LIMCH1-220ENST00000514190 SURF6O75683 361 aaKnown RBP16.14■□□□□ 0.17
LIMCH1-220ENST00000514190 SF3B3Q15393 1217 aaKnown RBP16.14■□□□□ 0.17
LIMCH1-220ENST00000514190 PELP1Q8IZL8 1130 aaKnown RBP16.14■□□□□ 0.17
LIMCH1-220ENST00000514190 NLRP3Q96P20 1036 aa16.14■□□□□ 0.17
LIMCH1-220ENST00000514190 COPRSQ9NQ92 184 aa16.14■□□□□ 0.17
LIMCH1-220ENST00000514190 PARP3Q9Y6F1 533 aa16.14■□□□□ 0.17
LIMCH1-220ENST00000514190 CHD4Q14839 1912 aa16.13■□□□□ 0.17
LIMCH1-220ENST00000514190 ABCC12Q96J65 1359 aa16.13■□□□□ 0.17
LIMCH1-220ENST00000514190 KIF13BQ9NQT8 1826 aa16.13■□□□□ 0.17
LIMCH1-220ENST00000514190 NPHP1O15259 732 aa16.13■□□□□ 0.17
LIMCH1-220ENST00000514190 PTPN12Q05209 780 aaKnown RBP16.13■□□□□ 0.17
LIMCH1-220ENST00000514190 IFIT5Q13325 482 aaKnown RBP16.13■□□□□ 0.17
LIMCH1-220ENST00000514190 CCDC57Q2TAC2 916 aa16.13■□□□□ 0.17
LIMCH1-220ENST00000514190 CCDC152Q4G0S7 254 aa16.13■□□□□ 0.17
LIMCH1-220ENST00000514190 HSP90AB4PQ58FF6 505 aa16.13■□□□□ 0.17
LIMCH1-220ENST00000514190 CCDC24Q8N4L8 307 aa16.13■□□□□ 0.17
LIMCH1-220ENST00000514190 GREM2Q9H772 168 aa16.13■□□□□ 0.17
LIMCH1-220ENST00000514190 PA2G4Q9UQ80 394 aaKnown RBP16.13■□□□□ 0.17
LIMCH1-220ENST00000514190 EXOC6BQ9Y2D4 811 aa16.13■□□□□ 0.17
LIMCH1-220ENST00000514190 RAB11FIP3O75154 756 aa16.12■□□□□ 0.17
LIMCH1-220ENST00000514190 ST5P78524 1137 aa16.12■□□□□ 0.17
LIMCH1-220ENST00000514190 NUCB1Q02818 461 aa16.12■□□□□ 0.17
LIMCH1-220ENST00000514190 FAM161AQ3B820 660 aa16.12■□□□□ 0.17
LIMCH1-220ENST00000514190 ANKRD45Q5TZF3 282 aa16.12■□□□□ 0.17
LIMCH1-220ENST00000514190 C3orf67Q6ZVT6 689 aa16.12■□□□□ 0.17
LIMCH1-220ENST00000514190 CCDC85AQ96PX6 553 aaPredicted RBP16.12■□□□□ 0.17
LIMCH1-220ENST00000514190 PDZRN3Q9UPQ7 1066 aa16.12■□□□□ 0.17
LIMCH1-220ENST00000514190 RTL9Q8NET4 1388 aa16.12■□□□□ 0.17
LIMCH1-220ENST00000514190 C10orf71Q711Q0 1435 aa16.11■□□□□ 0.17
LIMCH1-220ENST00000514190 ANKRD18BA2A2Z9 1011 aa16.11■□□□□ 0.17
LIMCH1-220ENST00000514190 ITGA6P23229 1130 aa16.11■□□□□ 0.17
LIMCH1-220ENST00000514190 G3BP1Q13283 466 aaKnown RBP eCLIP16.11■□□□□ 0.17
LIMCH1-220ENST00000514190 KLHDC4Q8TBB5 520 aa16.11■□□□□ 0.17
LIMCH1-220ENST00000514190 RIC1Q4ADV7 1423 aa16.11■□□□□ 0.17
LIMCH1-220ENST00000514190 YBX3P16989 372 aaKnown RBP eCLIP16.1■□□□□ 0.17
LIMCH1-220ENST00000514190 BRIP1Q9BX63 1249 aa16.1■□□□□ 0.17
LIMCH1-220ENST00000514190 FBXO3Q9UK99 471 aa16.1■□□□□ 0.17
LIMCH1-220ENST00000514190 KIAA1551Q9HCM1 1747 aa16.09■□□□□ 0.17
LIMCH1-220ENST00000514190 KLRG2A4D1S0 409 aaPredicted RBP16.09■□□□□ 0.17
LIMCH1-220ENST00000514190 GRIN3BO60391 1043 aa16.09■□□□□ 0.17
LIMCH1-220ENST00000514190 CHD1LQ86WJ1 897 aa16.09■□□□□ 0.17
LIMCH1-220ENST00000514190 ERC1Q8IUD2 1116 aa16.09■□□□□ 0.17
LIMCH1-220ENST00000514190 ZNF594Q96JF6 807 aaPredicted RBP16.09■□□□□ 0.17
LIMCH1-220ENST00000514190 EYA2O00167 538 aa16.08■□□□□ 0.16
LIMCH1-220ENST00000514190 APBB1O00213 710 aa16.08■□□□□ 0.16
LIMCH1-220ENST00000514190 CIAO1O76071 339 aa16.08■□□□□ 0.16
LIMCH1-220ENST00000514190 OS9Q13438 667 aaPredicted RBP16.08■□□□□ 0.16
LIMCH1-220ENST00000514190 TAF7LQ5H9L4 462 aa16.08■□□□□ 0.16
LIMCH1-220ENST00000514190 KIF1BPQ96EK5 621 aa16.08■□□□□ 0.16
LIMCH1-220ENST00000514190 LRRCC1Q9C099 1032 aa16.08■□□□□ 0.16
LIMCH1-220ENST00000514190 SIL1Q9H173 461 aa16.08■□□□□ 0.16
LIMCH1-220ENST00000514190 SEC31BQ9NQW1 1179 aa16.08■□□□□ 0.16
LIMCH1-220ENST00000514190 CRY2Q49AN0 593 aa16.07■□□□□ 0.16
LIMCH1-220ENST00000514190 ATG9AQ7Z3C6 839 aa16.07■□□□□ 0.16
LIMCH1-220ENST00000514190 RHPN1Q8TCX5 695 aa16.07■□□□□ 0.16
LIMCH1-220ENST00000514190 LNPKQ9C0E8 428 aa16.07■□□□□ 0.16
LIMCH1-220ENST00000514190 ZBTB47Q9UFB7 747 aaPredicted RBP16.07■□□□□ 0.16
LIMCH1-220ENST00000514190 DDX60Q8IY21 1712 aaKnown RBP16.07■□□□□ 0.16
LIMCH1-220ENST00000514190 SASH1O94885 1247 aa16.06■□□□□ 0.16
LIMCH1-220ENST00000514190 IL15P40933 162 aaPredicted RBP16.06■□□□□ 0.16
LIMCH1-220ENST00000514190 TGFB2P61812 414 aa16.06■□□□□ 0.16
LIMCH1-220ENST00000514190 LDHAL6AQ6ZMR3 332 aa16.06■□□□□ 0.16
LIMCH1-220ENST00000514190 DDX46Q7L014 1031 aaKnown RBP16.06■□□□□ 0.16
LIMCH1-220ENST00000514190 CDC5LQ99459 802 aaKnown RBP16.06■□□□□ 0.16
LIMCH1-220ENST00000514190 PUS3Q9BZE2 481 aaKnown RBP16.06■□□□□ 0.16
LIMCH1-220ENST00000514190 RIPOR2Q9Y4F9 1068 aa16.06■□□□□ 0.16
LIMCH1-220ENST00000514190 SMARCA5O60264 1052 aaPredicted RBP16.05■□□□□ 0.16
LIMCH1-220ENST00000514190 HOXA10P31260 410 aaPredicted RBP16.05■□□□□ 0.16
LIMCH1-220ENST00000514190 PDE6BP35913 854 aa16.05■□□□□ 0.16
LIMCH1-220ENST00000514190 IGHMBP2P38935 993 aaKnown RBP16.05■□□□□ 0.16
LIMCH1-220ENST00000514190 LRRC24Q50LG9 513 aa16.05■□□□□ 0.16
LIMCH1-220ENST00000514190 LAMB2P55268 1798 aa16.05■□□□□ 0.16
LIMCH1-220ENST00000514190 PDE4AP27815 886 aa16.04■□□□□ 0.16
LIMCH1-220ENST00000514190 RPS8P62241 208 aaKnown RBP16.04■□□□□ 0.16
LIMCH1-220ENST00000514190 SKAP1Q86WV1 359 aa16.04■□□□□ 0.16
LIMCH1-220ENST00000514190 ANKRD18AQ8IVF6 992 aa16.04■□□□□ 0.16
LIMCH1-220ENST00000514190 NRXN2Q9P2S2 1712 aa16.04■□□□□ 0.16
LIMCH1-220ENST00000514190 TFCP2Q12800 502 aa16.03■□□□□ 0.16
LIMCH1-220ENST00000514190 C16orf71Q8IYS4 520 aaPredicted RBP16.03■□□□□ 0.16
LIMCH1-220ENST00000514190 RPGRQ92834 1020 aaKnown RBP16.03■□□□□ 0.16
LIMCH1-220ENST00000514190 CELF1Q92879 486 aaKnown RBP16.03■□□□□ 0.16
LIMCH1-220ENST00000514190 RBM17Q96I25 401 aaKnown RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms