RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 CNNM1Q9NRU3 951 aa9.84□□□□□ -0.83
LIMCH1-219ENST00000514096 RNF123Q5XPI4 1314 aa9.84□□□□□ -0.83
LIMCH1-219ENST00000514096 SHANK3Q9BYB0 1731 aa9.84□□□□□ -0.83
LIMCH1-219ENST00000514096 SRGNP10124 158 aa9.83□□□□□ -0.84
LIMCH1-219ENST00000514096 OS9Q13438 667 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-219ENST00000514096 KSR2Q6VAB6 950 aa9.83□□□□□ -0.84
LIMCH1-219ENST00000514096 MASTLQ96GX5 879 aa9.83□□□□□ -0.84
LIMCH1-219ENST00000514096 ZBTB12Q9Y330 459 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-219ENST00000514096 NCAPD2Q15021 1401 aa9.83□□□□□ -0.84
LIMCH1-219ENST00000514096 NBPF7P0C2Y1 421 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-219ENST00000514096 PRKG1Q13976 671 aa9.83□□□□□ -0.84
LIMCH1-219ENST00000514096 GREM2Q9H772 168 aa9.83□□□□□ -0.84
LIMCH1-219ENST00000514096 NUP188Q5SRE5 1749 aa9.83□□□□□ -0.84
LIMCH1-219ENST00000514096 KCPQ6ZWJ8 1503 aa9.83□□□□□ -0.84
LIMCH1-219ENST00000514096 CICQ96RK0 1608 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-219ENST00000514096 KCNA3P22001 575 aa9.83□□□□□ -0.84
LIMCH1-219ENST00000514096 DLK2Q6UY11 383 aa9.83□□□□□ -0.84
LIMCH1-219ENST00000514096 CNKSR1Q969H4 720 aa9.83□□□□□ -0.84
LIMCH1-219ENST00000514096 SRCIN1Q9C0H9 1055 aa9.83□□□□□ -0.84
LIMCH1-219ENST00000514096 CCER2I3L3R5 266 aa9.82□□□□□ -0.84
LIMCH1-219ENST00000514096 HMGB2P26583 209 aaKnown RBP9.82□□□□□ -0.84
LIMCH1-219ENST00000514096 PPEF1O14829 653 aaPredicted RBP9.82□□□□□ -0.84
LIMCH1-219ENST00000514096 TGFB2P61812 414 aa9.82□□□□□ -0.84
LIMCH1-219ENST00000514096 CHAF1AQ13111 956 aaPredicted RBP9.82□□□□□ -0.84
LIMCH1-219ENST00000514096 HSP90AB3PQ58FF7 597 aa9.82□□□□□ -0.84
LIMCH1-219ENST00000514096 WDR63Q8IWG1 891 aa9.82□□□□□ -0.84
LIMCH1-219ENST00000514096 KCNQ5Q9NR82 932 aa9.82□□□□□ -0.84
LIMCH1-219ENST00000514096 UFL1O94874 794 aa9.82□□□□□ -0.84
LIMCH1-219ENST00000514096 IGKV5-2P06315 115 aa9.82□□□□□ -0.84
LIMCH1-219ENST00000514096 ZNF853P0CG23 659 aa9.82□□□□□ -0.84
LIMCH1-219ENST00000514096 POTEIP0CG38 1075 aa9.82□□□□□ -0.84
LIMCH1-219ENST00000514096 POTEJP0CG39 1038 aa9.82□□□□□ -0.84
LIMCH1-219ENST00000514096 SLFN5Q08AF3 891 aa9.82□□□□□ -0.84
LIMCH1-219ENST00000514096 RBM17Q96I25 401 aaKnown RBP9.82□□□□□ -0.84
LIMCH1-219ENST00000514096 CLEC4GQ6UXB4 293 aa9.81□□□□□ -0.84
LIMCH1-219ENST00000514096 IPO4Q8TEX9 1081 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-219ENST00000514096 ANP32BQ92688 251 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-219ENST00000514096 MXD3Q9BW11 206 aa9.81□□□□□ -0.84
LIMCH1-219ENST00000514096 COG6Q9Y2V7 657 aa9.81□□□□□ -0.84
LIMCH1-219ENST00000514096 NTSR2O95665 410 aa9.81□□□□□ -0.84
LIMCH1-219ENST00000514096 NCLP19338 710 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-219ENST00000514096 MPNDQ8N594 471 aa9.81□□□□□ -0.84
LIMCH1-219ENST00000514096 METTL22Q9BUU2 404 aaPredicted RBP9.81□□□□□ -0.84
LIMCH1-219ENST00000514096 PA2G4Q9UQ80 394 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-219ENST00000514096 RRP9O43818 475 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-219ENST00000514096 NPR1P16066 1061 aa9.81□□□□□ -0.84
LIMCH1-219ENST00000514096 RBM5P52756 815 aaKnown RBP eCLIP9.81□□□□□ -0.84
LIMCH1-219ENST00000514096 FMR1Q06787 632 aaKnown RBP eCLIP9.81□□□□□ -0.84
LIMCH1-219ENST00000514096 CCDC57Q2TAC2 916 aa9.81□□□□□ -0.84
LIMCH1-219ENST00000514096 DPY19L2Q6NUT2 758 aa9.81□□□□□ -0.84
LIMCH1-219ENST00000514096 VPS37DQ86XT2 251 aa9.81□□□□□ -0.84
LIMCH1-219ENST00000514096 LDHAL6AQ6ZMR3 332 aa9.8□□□□□ -0.84
LIMCH1-219ENST00000514096 ITGA6P23229 1130 aa9.8□□□□□ -0.84
LIMCH1-219ENST00000514096 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.8□□□□□ -0.84
LIMCH1-219ENST00000514096 ANKRD18AQ8IVF6 992 aa9.8□□□□□ -0.84
LIMCH1-219ENST00000514096 ZNF34Q8IZ26 560 aa9.8□□□□□ -0.84
LIMCH1-219ENST00000514096 NEURL1BA8MQ27 555 aa9.79□□□□□ -0.84
LIMCH1-219ENST00000514096 NFKBIEO00221 500 aa9.79□□□□□ -0.84
LIMCH1-219ENST00000514096 ALDH1B1P30837 517 aa9.79□□□□□ -0.84
LIMCH1-219ENST00000514096 RPS8P62241 208 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-219ENST00000514096 PARP10Q53GL7 1025 aa9.79□□□□□ -0.84
LIMCH1-219ENST00000514096 EPHA10Q5JZY3 1008 aa9.79□□□□□ -0.84
LIMCH1-219ENST00000514096 DNTTIP2Q5QJE6 756 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-219ENST00000514096 ZC3H12CQ9C0D7 883 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-219ENST00000514096 WNK3Q9BYP7 1800 aa9.79□□□□□ -0.84
LIMCH1-219ENST00000514096 DLG5Q8TDM6 1919 aa9.79□□□□□ -0.84
LIMCH1-219ENST00000514096 CCDC93Q567U6 631 aa9.79□□□□□ -0.84
LIMCH1-219ENST00000514096 PRAMEF18Q5VWM3 479 aa9.79□□□□□ -0.84
LIMCH1-219ENST00000514096 NEUROD6Q96NK8 337 aa9.79□□□□□ -0.84
LIMCH1-219ENST00000514096 PUS3Q9BZE2 481 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-219ENST00000514096 ABCC4O15439 1325 aa9.79□□□□□ -0.84
LIMCH1-219ENST00000514096 PKD1L3Q7Z443 1732 aa9.79□□□□□ -0.84
LIMCH1-219ENST00000514096 SHTN1A0MZ66 631 aa9.79□□□□□ -0.84
LIMCH1-219ENST00000514096 ERVV-1B6SEH8 477 aa9.79□□□□□ -0.84
LIMCH1-219ENST00000514096 IGHMBP2P38935 993 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-219ENST00000514096 WASHC4Q2M389 1173 aa9.79□□□□□ -0.84
LIMCH1-219ENST00000514096 IFIT5Q13325 482 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-219ENST00000514096 CCDC152Q4G0S7 254 aa9.78□□□□□ -0.84
LIMCH1-219ENST00000514096 MAP1SQ66K74 1059 aaPredicted RBP9.78□□□□□ -0.84
LIMCH1-219ENST00000514096 MEIS3Q99687 375 aa9.78□□□□□ -0.84
LIMCH1-219ENST00000514096 C5P01031 1676 aa9.78□□□□□ -0.84
LIMCH1-219ENST00000514096 UBTFL1P0CB47 393 aaPredicted RBP9.78□□□□□ -0.84
LIMCH1-219ENST00000514096 GCKRQ14397 625 aa9.78□□□□□ -0.84
LIMCH1-219ENST00000514096 LRRFIP2Q9Y608 721 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-219ENST00000514096 SCN11AQ9UI33 1791 aa9.77□□□□□ -0.84
LIMCH1-219ENST00000514096 USP54Q70EL1 1684 aa9.77□□□□□ -0.84
LIMCH1-219ENST00000514096 MRC1P22897 1456 aa9.77□□□□□ -0.84
LIMCH1-219ENST00000514096 LMNB1P20700 586 aa9.77□□□□□ -0.84
LIMCH1-219ENST00000514096 PRELPP51888 382 aa9.77□□□□□ -0.84
LIMCH1-219ENST00000514096 SLC4A8Q2Y0W8 1093 aa9.77□□□□□ -0.84
LIMCH1-219ENST00000514096 TBC1D10BQ4KMP7 808 aaPredicted RBP9.77□□□□□ -0.84
LIMCH1-219ENST00000514096 NIM1KQ8IY84 436 aa9.77□□□□□ -0.84
LIMCH1-219ENST00000514096 SUCLG2Q96I99 432 aa9.77□□□□□ -0.84
LIMCH1-219ENST00000514096 BICC1Q9H694 974 aaKnown RBP9.77□□□□□ -0.84
LIMCH1-219ENST00000514096 ZBTB38Q8NAP3 1195 aaPredicted RBP9.77□□□□□ -0.85
LIMCH1-219ENST00000514096 KLRK1P26718 216 aa9.77□□□□□ -0.85
LIMCH1-219ENST00000514096 EIF6P56537 245 aaKnown RBP9.77□□□□□ -0.85
LIMCH1-219ENST00000514096 GORABQ5T7V8 394 aa9.77□□□□□ -0.85
LIMCH1-219ENST00000514096 GRM8O00222 908 aa9.76□□□□□ -0.85
LIMCH1-219ENST00000514096 GPSM2P81274 684 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms