RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 LEO1Q8WVC0 666 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-215ENST00000512632 GOLGA6L6A8MZA4 724 aa10.97□□□□□ -0.65
LIMCH1-215ENST00000512632 NR1I2O75469 434 aa10.97□□□□□ -0.65
LIMCH1-215ENST00000512632 KCNH5Q8NCM2 988 aa10.97□□□□□ -0.65
LIMCH1-215ENST00000512632 BRF1Q92994 677 aa10.97□□□□□ -0.65
LIMCH1-215ENST00000512632 AXIN2Q9Y2T1 843 aa10.97□□□□□ -0.65
LIMCH1-215ENST00000512632 TAF5LO75529 589 aa10.96□□□□□ -0.65
LIMCH1-215ENST00000512632 ANKRD1Q15327 319 aa10.96□□□□□ -0.65
LIMCH1-215ENST00000512632 SCAND2PQ9GZW5 306 aaPredicted RBP10.96□□□□□ -0.65
LIMCH1-215ENST00000512632 NEXNQ0ZGT2 675 aa10.96□□□□□ -0.65
LIMCH1-215ENST00000512632 DNAJC25Q9H1X3 360 aa10.96□□□□□ -0.65
LIMCH1-215ENST00000512632 NAP1L2Q9ULW6 460 aaPredicted RBP10.96□□□□□ -0.65
LIMCH1-215ENST00000512632 RIOK3O14730 519 aaKnown RBP10.96□□□□□ -0.66
LIMCH1-215ENST00000512632 SLFNL1Q499Z3 407 aa10.96□□□□□ -0.66
LIMCH1-215ENST00000512632 LRRC37A3O60309 1634 aa10.96□□□□□ -0.66
LIMCH1-215ENST00000512632 H3BQV1 296 aa10.96□□□□□ -0.66
LIMCH1-215ENST00000512632 ZC3H6P61129 1189 aaKnown RBP10.96□□□□□ -0.66
LIMCH1-215ENST00000512632 CBX1P83916 185 aa10.96□□□□□ -0.66
LIMCH1-215ENST00000512632 IFFO2Q5TF58 517 aa10.96□□□□□ -0.66
LIMCH1-215ENST00000512632 PGBD1Q96JS3 809 aa10.96□□□□□ -0.66
LIMCH1-215ENST00000512632 BCL2L12Q9HB09 334 aa10.96□□□□□ -0.66
LIMCH1-215ENST00000512632 ATP5J2-PTCD1G3V325 749 aa10.95□□□□□ -0.66
LIMCH1-215ENST00000512632 PTCD1O75127 700 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-215ENST00000512632 PDIA6Q15084 440 aa10.95□□□□□ -0.66
LIMCH1-215ENST00000512632 DDX46Q7L014 1031 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-215ENST00000512632 DBNLQ9UJU6 430 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-215ENST00000512632 A0A087WWV3 80 aa10.95□□□□□ -0.66
LIMCH1-215ENST00000512632 ZNF165P49910 485 aa10.95□□□□□ -0.66
LIMCH1-215ENST00000512632 TFCP2Q12800 502 aa10.95□□□□□ -0.66
LIMCH1-215ENST00000512632 CHAF1AQ13111 956 aaPredicted RBP10.95□□□□□ -0.66
LIMCH1-215ENST00000512632 Q6ZUG5 572 aa10.95□□□□□ -0.66
LIMCH1-215ENST00000512632 NEK1Q96PY6 1258 aa10.95□□□□□ -0.66
LIMCH1-215ENST00000512632 NPHP3Q7Z494 1330 aa10.95□□□□□ -0.66
LIMCH1-215ENST00000512632 GCKRQ14397 625 aa10.95□□□□□ -0.66
LIMCH1-215ENST00000512632 UBE3BQ7Z3V4 1068 aa10.95□□□□□ -0.66
LIMCH1-215ENST00000512632 ARHGEF25Q86VW2 580 aa10.95□□□□□ -0.66
LIMCH1-215ENST00000512632 NFATC2IPQ8NCF5 419 aa10.95□□□□□ -0.66
LIMCH1-215ENST00000512632 DBNDD2Q9BQY9 259 aa10.95□□□□□ -0.66
LIMCH1-215ENST00000512632 ANKARQ7Z5J8 1434 aa10.94□□□□□ -0.66
LIMCH1-215ENST00000512632 CACNA1FO60840 1977 aa10.94□□□□□ -0.66
LIMCH1-215ENST00000512632 NEURL1BA8MQ27 555 aa10.94□□□□□ -0.66
LIMCH1-215ENST00000512632 FTOQ9C0B1 505 aaKnown RBP eCLIP10.94□□□□□ -0.66
LIMCH1-215ENST00000512632 C16orf45Q96MC5 204 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-215ENST00000512632 PXDNQ92626 1479 aa10.94□□□□□ -0.66
LIMCH1-215ENST00000512632 PPP4R3BQ5MIZ7 849 aa10.94□□□□□ -0.66
LIMCH1-215ENST00000512632 FBXW7Q969H0 707 aa10.94□□□□□ -0.66
LIMCH1-215ENST00000512632 CCDC94Q9BW85 323 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-215ENST00000512632 USP16Q9Y5T5 823 aa10.94□□□□□ -0.66
LIMCH1-215ENST00000512632 ELP1O95163 1332 aa10.94□□□□□ -0.66
LIMCH1-215ENST00000512632 NPHP4O75161 1426 aaPredicted RBP10.93□□□□□ -0.66
LIMCH1-215ENST00000512632 DDX19AQ9NUU7 478 aaKnown RBP10.93□□□□□ -0.66
LIMCH1-215ENST00000512632 SPDYE4A6NLX3 237 aa10.93□□□□□ -0.66
LIMCH1-215ENST00000512632 CYP21A2P08686 494 aa10.93□□□□□ -0.66
LIMCH1-215ENST00000512632 GUCY1B3Q02153 619 aa10.93□□□□□ -0.66
LIMCH1-215ENST00000512632 ZNF790Q6PG37 636 aa10.93□□□□□ -0.66
LIMCH1-215ENST00000512632 TPM3P06753 285 aa10.93□□□□□ -0.66
LIMCH1-215ENST00000512632 ZNF496Q96IT1 587 aaPredicted RBP10.93□□□□□ -0.66
LIMCH1-215ENST00000512632 CLSTN2Q9H4D0 955 aa10.93□□□□□ -0.66
LIMCH1-215ENST00000512632 NLRP2Q9NX02 1062 aa10.93□□□□□ -0.66
LIMCH1-215ENST00000512632 CCT2P78371 535 aaKnown RBP10.93□□□□□ -0.66
LIMCH1-215ENST00000512632 ANKRD13DQ6ZTN6 518 aa10.93□□□□□ -0.66
LIMCH1-215ENST00000512632 NEUROD6Q96NK8 337 aa10.93□□□□□ -0.66
LIMCH1-215ENST00000512632 MED23Q9ULK4 1368 aa10.92□□□□□ -0.66
LIMCH1-215ENST00000512632 ERCC4Q92889 916 aaPredicted RBP10.92□□□□□ -0.66
LIMCH1-215ENST00000512632 GTF3C6Q969F1 213 aa10.92□□□□□ -0.66
LIMCH1-215ENST00000512632 COL15A1P39059 1388 aa10.92□□□□□ -0.66
LIMCH1-215ENST00000512632 TNNI3KQ59H18 835 aa10.92□□□□□ -0.66
LIMCH1-215ENST00000512632 CHST3Q7LGC8 479 aa10.92□□□□□ -0.66
LIMCH1-215ENST00000512632 HMG20BQ9P0W2 317 aa10.92□□□□□ -0.66
LIMCH1-215ENST00000512632 FPGT-TNNI3KV9GXZ4 949 aa10.92□□□□□ -0.66
LIMCH1-215ENST00000512632 GTF2F1P35269 517 aaKnown RBP eCLIP10.92□□□□□ -0.66
LIMCH1-215ENST00000512632 ZNF75DP51815 510 aa10.92□□□□□ -0.66
LIMCH1-215ENST00000512632 PTPN12Q05209 780 aaKnown RBP10.92□□□□□ -0.66
LIMCH1-215ENST00000512632 A0A087WZG4 1122 aa10.91□□□□□ -0.66
LIMCH1-215ENST00000512632 SCRN1Q12765 414 aa10.91□□□□□ -0.66
LIMCH1-215ENST00000512632 RESTQ13127 1097 aa10.91□□□□□ -0.66
LIMCH1-215ENST00000512632 RAPGEF4Q8WZA2 1011 aa10.91□□□□□ -0.66
LIMCH1-215ENST00000512632 METTL22Q9BUU2 404 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-215ENST00000512632 SNRKQ9NRH2 765 aa10.91□□□□□ -0.66
LIMCH1-215ENST00000512632 ARHGAP23Q9P227 1491 aa10.91□□□□□ -0.66
LIMCH1-215ENST00000512632 UTYO14607 1347 aa10.91□□□□□ -0.66
LIMCH1-215ENST00000512632 ATP5JP18859 108 aa10.91□□□□□ -0.66
LIMCH1-215ENST00000512632 KRT32Q14532 448 aa10.91□□□□□ -0.66
LIMCH1-215ENST00000512632 ARID5BQ14865 1188 aa10.91□□□□□ -0.66
LIMCH1-215ENST00000512632 ATP2B3Q16720 1220 aa10.91□□□□□ -0.66
LIMCH1-215ENST00000512632 PDCL2Q8N4E4 241 aa10.91□□□□□ -0.66
LIMCH1-215ENST00000512632 CACTINQ8WUQ7 758 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-215ENST00000512632 ZNF592Q92610 1267 aa10.91□□□□□ -0.66
LIMCH1-215ENST00000512632 A0A0G2JLW4 131 aa10.91□□□□□ -0.66
LIMCH1-215ENST00000512632 APOBRQ0VD83 1088 aa10.91□□□□□ -0.66
LIMCH1-215ENST00000512632 NCOA5Q9HCD5 579 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-215ENST00000512632 CLIP2Q9UDT6 1046 aa10.91□□□□□ -0.66
LIMCH1-215ENST00000512632 TAOK2Q9UL54 1235 aa10.91□□□□□ -0.66
LIMCH1-215ENST00000512632 TIMM10P62072 90 aa10.9□□□□□ -0.66
LIMCH1-215ENST00000512632 NAA30Q147X3 362 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-215ENST00000512632 STOX1Q6ZVD7 989 aa10.9□□□□□ -0.66
LIMCH1-215ENST00000512632 GOLGA6L19H0YKK7 550 aa10.9□□□□□ -0.66
LIMCH1-215ENST00000512632 PDIA4P13667 645 aaKnown RBP10.9□□□□□ -0.66
LIMCH1-215ENST00000512632 CCDC144BQ3MJ40 725 aa10.9□□□□□ -0.66
LIMCH1-215ENST00000512632 ZSCAN25Q6NSZ9 544 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms