RNA–Protein interactions for RNA: ENST00000511774.1

HMGCS1-206, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 4

Gene HMGCS1, Length 500 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-206ENST00000511774 VPS33BQ9H267 617 aa25.28■■□□□ 1.64
HMGCS1-206ENST00000511774 ANKRD36CQ5JPF3 1778 aa25.28■■□□□ 1.64
HMGCS1-206ENST00000511774 SLC10A5Q5PT55 438 aa25.27■■□□□ 1.64
HMGCS1-206ENST00000511774 NLRP3Q96P20 1036 aa25.27■■□□□ 1.64
HMGCS1-206ENST00000511774 PCDH10Q9P2E7 1040 aa25.27■■□□□ 1.64
HMGCS1-206ENST00000511774 KIAA2012Q0VF49 1180 aa25.26■■□□□ 1.63
HMGCS1-206ENST00000511774 ZC3H15Q8WU90 426 aaKnown RBP25.26■■□□□ 1.63
HMGCS1-206ENST00000511774 PDIA6Q15084 440 aa25.25■■□□□ 1.63
HMGCS1-206ENST00000511774 DPP8Q6V1X1 898 aaPredicted RBP25.25■■□□□ 1.63
HMGCS1-206ENST00000511774 PPP1R42Q7Z4L9 355 aa25.25■■□□□ 1.63
HMGCS1-206ENST00000511774 USP48Q86UV5 1035 aa25.25■■□□□ 1.63
HMGCS1-206ENST00000511774 CDHR2Q9BYE9 1310 aa25.25■■□□□ 1.63
HMGCS1-206ENST00000511774 PROSER3Q2NL68 480 aa25.24■■□□□ 1.63
HMGCS1-206ENST00000511774 PARP10Q53GL7 1025 aa25.24■■□□□ 1.63
HMGCS1-206ENST00000511774 CDC37L1Q7L3B6 337 aa25.24■■□□□ 1.63
HMGCS1-206ENST00000511774 SP8Q8IXZ3 490 aa25.24■■□□□ 1.63
HMGCS1-206ENST00000511774 SUPT20HQ8NEM7 779 aa25.24■■□□□ 1.63
HMGCS1-206ENST00000511774 BCL2L13Q9BXK5 485 aa25.24■■□□□ 1.63
HMGCS1-206ENST00000511774 CNOT7Q9UIV1 285 aaKnown RBP25.24■■□□□ 1.63
HMGCS1-206ENST00000511774 FAM155AB1AL88 458 aaPredicted RBP25.23■■□□□ 1.63
HMGCS1-206ENST00000511774 EGFRP00533 1210 aa25.23■■□□□ 1.63
HMGCS1-206ENST00000511774 ANXA1P04083 346 aa25.23■■□□□ 1.63
HMGCS1-206ENST00000511774 HCLS1P14317 486 aaPredicted RBP25.23■■□□□ 1.63
HMGCS1-206ENST00000511774 HUNKP57058 714 aa25.23■■□□□ 1.63
HMGCS1-206ENST00000511774 NOGQ13253 232 aa25.23■■□□□ 1.63
HMGCS1-206ENST00000511774 MPNDQ8N594 471 aa25.23■■□□□ 1.63
HMGCS1-206ENST00000511774 PNISRQ8TF01 805 aaKnown RBP25.23■■□□□ 1.63
HMGCS1-206ENST00000511774 UTP14AQ9BVJ6 771 aaKnown RBP25.23■■□□□ 1.63
HMGCS1-206ENST00000511774 ZBTB12Q9Y330 459 aaPredicted RBP25.22■■□□□ 1.63
HMGCS1-206ENST00000511774 LRRC37AA6NMS7 1700 aa25.22■■□□□ 1.63
HMGCS1-206ENST00000511774 COL4A1P02462 1669 aa25.22■■□□□ 1.63
HMGCS1-206ENST00000511774 MICALL2Q8IY33 904 aa25.21■■□□□ 1.63
HMGCS1-206ENST00000511774 PLEKHF1Q96S99 279 aa25.21■■□□□ 1.63
HMGCS1-206ENST00000511774 BBOX1O75936 387 aa25.2■■□□□ 1.62
HMGCS1-206ENST00000511774 TNIP1Q15025 636 aa25.2■■□□□ 1.62
HMGCS1-206ENST00000511774 SAMD7Q7Z3H4 446 aa25.2■■□□□ 1.62
HMGCS1-206ENST00000511774 TMX4Q9H1E5 349 aaPredicted RBP25.2■■□□□ 1.62
HMGCS1-206ENST00000511774 ERBB4Q15303 1308 aa25.19■■□□□ 1.62
HMGCS1-206ENST00000511774 SOX10P56693 466 aa25.19■■□□□ 1.62
HMGCS1-206ENST00000511774 ZNF428Q96B54 188 aa25.18■■□□□ 1.62
HMGCS1-206ENST00000511774 NLRP10Q86W26 655 aa25.17■■□□□ 1.62
HMGCS1-206ENST00000511774 AKAP11Q9UKA4 1901 aa25.17■■□□□ 1.62
HMGCS1-206ENST00000511774 DDX60Q8IY21 1712 aaKnown RBP25.17■■□□□ 1.62
HMGCS1-206ENST00000511774 ADM5C9JUS6 153 aa25.16■■□□□ 1.62
HMGCS1-206ENST00000511774 PSMD14O00487 310 aa25.16■■□□□ 1.62
HMGCS1-206ENST00000511774 KIF23Q02241 960 aaPredicted RBP25.16■■□□□ 1.62
HMGCS1-206ENST00000511774 GRAPQ13588 217 aa25.16■■□□□ 1.62
HMGCS1-206ENST00000511774 NFE2L2Q16236 605 aa25.16■■□□□ 1.62
HMGCS1-206ENST00000511774 TBC1D10BQ4KMP7 808 aaPredicted RBP25.16■■□□□ 1.62
HMGCS1-206ENST00000511774 RGMBQ6NW40 437 aa25.16■■□□□ 1.62
HMGCS1-206ENST00000511774 GRAPLQ8TC17 118 aaPredicted RBP25.16■■□□□ 1.62
HMGCS1-206ENST00000511774 KCNQ5Q9NR82 932 aa25.16■■□□□ 1.62
HMGCS1-206ENST00000511774 H7C1D1 291 aa25.15■■□□□ 1.62
HMGCS1-206ENST00000511774 EIF2S2P20042 333 aaKnown RBP25.15■■□□□ 1.62
HMGCS1-206ENST00000511774 KRT26Q7Z3Y9 468 aa25.15■■□□□ 1.62
HMGCS1-206ENST00000511774 SCN9AQ15858 1988 aa25.14■■□□□ 1.62
HMGCS1-206ENST00000511774 DBNDD1Q9H9R9 158 aa25.14■■□□□ 1.62
HMGCS1-206ENST00000511774 GBA2Q9HCG7 927 aaPredicted RBP25.14■■□□□ 1.62
HMGCS1-206ENST00000511774 RNF186Q9NXI6 227 aa25.14■■□□□ 1.62
HMGCS1-206ENST00000511774 TRPA1O75762 1119 aa25.13■■□□□ 1.61
HMGCS1-206ENST00000511774 DDX46Q7L014 1031 aaKnown RBP25.13■■□□□ 1.61
HMGCS1-206ENST00000511774 DPF2Q92785 391 aa25.13■■□□□ 1.61
HMGCS1-206ENST00000511774 SAGE1Q9NXZ1 904 aa25.12■■□□□ 1.61
HMGCS1-206ENST00000511774 RTL9Q8NET4 1388 aa25.12■■□□□ 1.61
HMGCS1-206ENST00000511774 ASTN2O75129 1339 aaPredicted RBP25.12■■□□□ 1.61
HMGCS1-206ENST00000511774 COPS6Q7L5N1 327 aa25.11■■□□□ 1.61
HMGCS1-206ENST00000511774 TRMT112Q9UI30 125 aaKnown RBP25.11■■□□□ 1.61
HMGCS1-206ENST00000511774 AIMP1Q12904 312 aaKnown RBP25.1■■□□□ 1.61
HMGCS1-206ENST00000511774 RBM26Q5T8P6 1007 aaKnown RBP25.1■■□□□ 1.61
HMGCS1-206ENST00000511774 XAGE3Q8WTP9 111 aa25.1■■□□□ 1.61
HMGCS1-206ENST00000511774 NECTIN2Q92692 538 aa25.1■■□□□ 1.61
HMGCS1-206ENST00000511774 POLLQ9UGP5 575 aa25.1■■□□□ 1.61
HMGCS1-206ENST00000511774 TSPYL4Q9UJ04 414 aa25.1■■□□□ 1.61
HMGCS1-206ENST00000511774 RIMBP2O15034 1052 aa25.09■■□□□ 1.61
HMGCS1-206ENST00000511774 ZNF157P51786 506 aaPredicted RBP25.09■■□□□ 1.61
HMGCS1-206ENST00000511774 CELF1Q92879 486 aaKnown RBP25.09■■□□□ 1.61
HMGCS1-206ENST00000511774 CSRNP1Q96S65 589 aa25.09■■□□□ 1.61
HMGCS1-206ENST00000511774 SLC10A3P09131 477 aa25.08■■□□□ 1.61
HMGCS1-206ENST00000511774 TCIRG1Q13488 830 aa25.08■■□□□ 1.61
HMGCS1-206ENST00000511774 WASHC4Q2M389 1173 aa25.08■■□□□ 1.61
HMGCS1-206ENST00000511774 C2orf69Q8N8R5 385 aa25.08■■□□□ 1.61
HMGCS1-206ENST00000511774 SH3TC1Q8TE82 1336 aa25.08■■□□□ 1.6
HMGCS1-206ENST00000511774 GPSM2P81274 684 aa25.07■■□□□ 1.6
HMGCS1-206ENST00000511774 CCDC102AQ96A19 550 aa25.07■■□□□ 1.6
HMGCS1-206ENST00000511774 DOK7Q18PE1 504 aa25.06■■□□□ 1.6
HMGCS1-206ENST00000511774 NSFL1CQ9UNZ2 370 aaKnown RBP25.06■■□□□ 1.6
HMGCS1-206ENST00000511774 ECE2O60344 883 aa25.05■■□□□ 1.6
HMGCS1-206ENST00000511774 NEFMP07197 916 aa25.05■■□□□ 1.6
HMGCS1-206ENST00000511774 HSP90AB3PQ58FF7 597 aa25.05■■□□□ 1.6
HMGCS1-206ENST00000511774 DCPSQ96C86 337 aaKnown RBP25.05■■□□□ 1.6
HMGCS1-206ENST00000511774 KRT24Q2M2I5 525 aa25.04■■□□□ 1.6
HMGCS1-206ENST00000511774 TMC4Q7Z404 712 aa25.04■■□□□ 1.6
HMGCS1-206ENST00000511774 GGA3Q9NZ52 723 aa25.04■■□□□ 1.6
HMGCS1-206ENST00000511774 KIF4BQ2VIQ3 1234 aa25.03■■□□□ 1.6
HMGCS1-206ENST00000511774 CTU1Q7Z7A3 348 aaKnown RBP25.03■■□□□ 1.6
HMGCS1-206ENST00000511774 C6orf229H3BNL8 230 aa25.02■■□□□ 1.6
HMGCS1-206ENST00000511774 RPS12P25398 132 aaKnown RBP25.02■■□□□ 1.6
HMGCS1-206ENST00000511774 RASAL3Q86YV0 1011 aa25.02■■□□□ 1.6
HMGCS1-206ENST00000511774 CDCA5Q96FF9 252 aa25.02■■□□□ 1.6
HMGCS1-206ENST00000511774 FAM89AQ96GI7 184 aa25.02■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms