RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 MED14O60244 1454 aa13.93□□□□□ -0.18
LIMCH1-213ENST00000511496 MYO1FO00160 1098 aa13.93□□□□□ -0.18
LIMCH1-213ENST00000511496 TUBB4AP04350 444 aa13.93□□□□□ -0.18
LIMCH1-213ENST00000511496 CCDC150Q8NCX0 1101 aa13.93□□□□□ -0.18
LIMCH1-213ENST00000511496 ARHGAP45Q92619 1136 aa13.93□□□□□ -0.18
LIMCH1-213ENST00000511496 DDX11Q96FC9 970 aa13.93□□□□□ -0.18
LIMCH1-213ENST00000511496 BICRAQ9NZM4 1560 aa13.93□□□□□ -0.18
LIMCH1-213ENST00000511496 PLA2R1Q13018 1463 aa13.93□□□□□ -0.18
LIMCH1-213ENST00000511496 GOLGA8FQ08AF8 430 aa13.93□□□□□ -0.18
LIMCH1-213ENST00000511496 GOLGA8DPQ0D2H9 430 aa13.93□□□□□ -0.18
LIMCH1-213ENST00000511496 STX1AQ16623 288 aa13.93□□□□□ -0.18
LIMCH1-213ENST00000511496 C11orf91Q3C1V1 193 aa13.93□□□□□ -0.18
LIMCH1-213ENST00000511496 FMNL3Q8IVF7 1028 aa13.93□□□□□ -0.18
LIMCH1-213ENST00000511496 API5Q9BZZ5 524 aaKnown RBP13.93□□□□□ -0.18
LIMCH1-213ENST00000511496 ABCB6Q9NP58 842 aa13.93□□□□□ -0.18
LIMCH1-213ENST00000511496 CAND2O75155 1236 aa13.92□□□□□ -0.18
LIMCH1-213ENST00000511496 TEX11Q8IYF3 940 aa13.92□□□□□ -0.18
LIMCH1-213ENST00000511496 LEO1Q8WVC0 666 aaPredicted RBP13.92□□□□□ -0.18
LIMCH1-213ENST00000511496 BORCS6Q96GS4 357 aa13.92□□□□□ -0.18
LIMCH1-213ENST00000511496 WDR24Q96S15 920 aa13.92□□□□□ -0.18
LIMCH1-213ENST00000511496 SCAND2PQ9GZW5 306 aaPredicted RBP13.92□□□□□ -0.18
LIMCH1-213ENST00000511496 ABCC4O15439 1325 aa13.92□□□□□ -0.18
LIMCH1-213ENST00000511496 CAVIN2O95810 425 aa13.92□□□□□ -0.18
LIMCH1-213ENST00000511496 BRD3Q15059 726 aa13.92□□□□□ -0.18
LIMCH1-213ENST00000511496 NBPF9Q3BBW0 867 aa13.92□□□□□ -0.18
LIMCH1-213ENST00000511496 BEND6Q5SZJ8 279 aaPredicted RBP13.92□□□□□ -0.18
LIMCH1-213ENST00000511496 RASEFQ8IZ41 740 aa13.92□□□□□ -0.18
LIMCH1-213ENST00000511496 GPTP24298 496 aa13.92□□□□□ -0.18
LIMCH1-213ENST00000511496 PTPN21Q16825 1174 aa13.92□□□□□ -0.18
LIMCH1-213ENST00000511496 NBPF10Q6P3W6 841 aaKnown RBP13.92□□□□□ -0.18
LIMCH1-213ENST00000511496 UNC5CLQ8IV45 518 aa13.92□□□□□ -0.18
LIMCH1-213ENST00000511496 RPAP2Q8IXW5 612 aaPredicted RBP13.92□□□□□ -0.18
LIMCH1-213ENST00000511496 PGBD1Q96JS3 809 aa13.92□□□□□ -0.18
LIMCH1-213ENST00000511496 CABS1Q96KC9 395 aa13.92□□□□□ -0.18
LIMCH1-213ENST00000511496 PLEKHF1Q96S99 279 aa13.92□□□□□ -0.18
LIMCH1-213ENST00000511496 OSBPL5Q9H0X9 879 aaPredicted RBP13.92□□□□□ -0.18
LIMCH1-213ENST00000511496 ADCY10Q96PN6 1610 aa13.91□□□□□ -0.18
LIMCH1-213ENST00000511496 IL16Q14005 1332 aa13.91□□□□□ -0.18
LIMCH1-213ENST00000511496 C21orf2O43822 256 aa13.91□□□□□ -0.18
LIMCH1-213ENST00000511496 RHOXF2BP0C7M4 288 aa13.91□□□□□ -0.18
LIMCH1-213ENST00000511496 CCNHP51946 323 aaPredicted RBP13.91□□□□□ -0.18
LIMCH1-213ENST00000511496 AP1ARQ63HQ0 302 aa13.91□□□□□ -0.18
LIMCH1-213ENST00000511496 RSRC2Q7L4I2 434 aaKnown RBP13.91□□□□□ -0.18
LIMCH1-213ENST00000511496 DHX40Q8IX18 779 aaKnown RBP13.91□□□□□ -0.18
LIMCH1-213ENST00000511496 RHOXF2Q9BQY4 288 aa13.91□□□□□ -0.18
LIMCH1-213ENST00000511496 TRAK1Q9UPV9 953 aa13.91□□□□□ -0.18
LIMCH1-213ENST00000511496 SNX14Q9Y5W7 946 aa13.91□□□□□ -0.18
LIMCH1-213ENST00000511496 NUP160Q12769 1436 aa13.91□□□□□ -0.18
LIMCH1-213ENST00000511496 GCFC2P16383 781 aaKnown RBP13.91□□□□□ -0.18
LIMCH1-213ENST00000511496 IRX1P78414 480 aaPredicted RBP13.91□□□□□ -0.18
LIMCH1-213ENST00000511496 RBM43Q6ZSC3 357 aaKnown RBP13.91□□□□□ -0.18
LIMCH1-213ENST00000511496 CEP57Q86XR8 500 aa13.91□□□□□ -0.18
LIMCH1-213ENST00000511496 AFAP1L1Q8TED9 768 aa13.91□□□□□ -0.18
LIMCH1-213ENST00000511496 DHX58Q96C10 678 aa13.91□□□□□ -0.18
LIMCH1-213ENST00000511496 REREQ9P2R6 1566 aa13.91□□□□□ -0.18
LIMCH1-213ENST00000511496 ADGBQ8N7X0 1667 aa13.91□□□□□ -0.18
LIMCH1-213ENST00000511496 CLTCL1P53675 1640 aa13.91□□□□□ -0.18
LIMCH1-213ENST00000511496 PTPRGP23470 1445 aa13.91□□□□□ -0.18
LIMCH1-213ENST00000511496 TTC21BQ7Z4L5 1316 aa13.91□□□□□ -0.18
LIMCH1-213ENST00000511496 CCP110O43303 1012 aa13.9□□□□□ -0.18
LIMCH1-213ENST00000511496 HSPA4P34932 840 aa13.9□□□□□ -0.18
LIMCH1-213ENST00000511496 ACTN3Q08043 901 aaPredicted RBP13.9□□□□□ -0.18
LIMCH1-213ENST00000511496 ZNF513Q8N8E2 541 aaPredicted RBP13.9□□□□□ -0.18
LIMCH1-213ENST00000511496 CPSF2Q9P2I0 782 aaKnown RBP13.9□□□□□ -0.18
LIMCH1-213ENST00000511496 WDR62O43379 1518 aa13.9□□□□□ -0.18
LIMCH1-213ENST00000511496 ERLIN1O75477 346 aa13.9□□□□□ -0.18
LIMCH1-213ENST00000511496 PEX19P40855 299 aa13.9□□□□□ -0.18
LIMCH1-213ENST00000511496 MAP3K9P80192 1104 aa13.9□□□□□ -0.18
LIMCH1-213ENST00000511496 TBC1D8BQ0IIM8 1120 aa13.9□□□□□ -0.18
LIMCH1-213ENST00000511496 FAM71BQ8TC56 605 aa13.9□□□□□ -0.18
LIMCH1-213ENST00000511496 ZKSCAN4Q969J2 545 aaPredicted RBP13.9□□□□□ -0.18
LIMCH1-213ENST00000511496 IMPACTQ9P2X3 320 aa13.9□□□□□ -0.18
LIMCH1-213ENST00000511496 YEATS2Q9ULM3 1422 aa13.9□□□□□ -0.18
LIMCH1-213ENST00000511496 LAMC1P11047 1609 aa13.9□□□□□ -0.18
LIMCH1-213ENST00000511496 CLNS1AP54105 237 aaKnown RBP13.9□□□□□ -0.18
LIMCH1-213ENST00000511496 CASP8Q14790 479 aa13.9□□□□□ -0.18
LIMCH1-213ENST00000511496 TWISTNBQ3B726 338 aaPredicted RBP13.9□□□□□ -0.18
LIMCH1-213ENST00000511496 CFAP70Q5T0N1 1121 aa13.9□□□□□ -0.18
LIMCH1-213ENST00000511496 CEP57L1Q8IYX8 460 aa13.9□□□□□ -0.18
LIMCH1-213ENST00000511496 TERF2IPQ9NYB0 399 aa13.9□□□□□ -0.18
LIMCH1-213ENST00000511496 RNF40O75150 1001 aa13.89□□□□□ -0.19
LIMCH1-213ENST00000511496 SAMM50Q9Y512 469 aa13.89□□□□□ -0.19
LIMCH1-213ENST00000511496 ZNF518AQ6AHZ1 1483 aa13.89□□□□□ -0.19
LIMCH1-213ENST00000511496 SHPRHQ149N8 1683 aa13.89□□□□□ -0.19
LIMCH1-213ENST00000511496 GPATCH8Q9UKJ3 1502 aaKnown RBP13.89□□□□□ -0.19
LIMCH1-213ENST00000511496 WDHD1O75717 1129 aaPredicted RBP13.89□□□□□ -0.19
LIMCH1-213ENST00000511496 ARMC3Q5W041 872 aa13.89□□□□□ -0.19
LIMCH1-213ENST00000511496 NBPF5PQ86XG9 351 aaPredicted RBP13.89□□□□□ -0.19
LIMCH1-213ENST00000511496 SMARCC1Q92922 1105 aaPredicted RBP13.89□□□□□ -0.19
LIMCH1-213ENST00000511496 TTC14Q96N46 770 aa13.89□□□□□ -0.19
LIMCH1-213ENST00000511496 MEIS3Q99687 375 aa13.89□□□□□ -0.19
LIMCH1-213ENST00000511496 CUL7Q14999 1698 aa13.89□□□□□ -0.19
LIMCH1-213ENST00000511496 GCKP35557 465 aa13.89□□□□□ -0.19
LIMCH1-213ENST00000511496 STAG1Q8WVM7 1258 aa13.89□□□□□ -0.19
LIMCH1-213ENST00000511496 PNKPQ96T60 521 aa13.89□□□□□ -0.19
LIMCH1-213ENST00000511496 ANO10Q9NW15 660 aa13.89□□□□□ -0.19
LIMCH1-213ENST00000511496 MCM8Q9UJA3 840 aa13.89□□□□□ -0.19
LIMCH1-213ENST00000511496 MRFAP1Q9Y605 127 aa13.89□□□□□ -0.19
LIMCH1-213ENST00000511496 EVC2Q86UK5 1308 aa13.88□□□□□ -0.19
LIMCH1-213ENST00000511496 EIF2AK4Q9P2K8 1649 aaKnown RBP13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms