RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 HAUS8Q9BT25 410 aa4.11□□□□□ -1.75
USP53-205ENST00000509769 PAIP2BQ9ULR5 123 aaKnown RBP4.11□□□□□ -1.75
USP53-205ENST00000509769 AHDC1Q5TGY3 1603 aaPredicted RBP4.11□□□□□ -1.75
USP53-205ENST00000509769 PZPP20742 1482 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 NEBLO76041 1014 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 INPP5BP32019 993 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 DEUP1Q05D60 604 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 DMTNQ08495 405 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 TSC22D1Q15714 1073 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 HDXQ7Z353 690 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 RSPH3Q86UC2 560 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 PALM2Q8IXS6 379 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 NEK1Q96PY6 1258 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 SLAIN2Q9P270 581 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 EVI5O60447 810 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 SLU7O95391 586 aaKnown RBP4.1□□□□□ -1.75
USP53-205ENST00000509769 APBA1Q02410 837 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 CCDC183Q5T5S1 534 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 BICD1Q96G01 975 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 BATF3Q9NR55 127 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 ANO10Q9NW15 660 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 USP21Q9UK80 565 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 WWC3Q9ULE0 1092 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 FRMD4BQ9Y2L6 1034 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 E9PMD0 336 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 SPECC1L-ADORA2AF8WAN1 911 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 PFDN1O60925 122 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 SERPINI2O75830 405 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 EIF2S2P20042 333 aaKnown RBP4.1□□□□□ -1.75
USP53-205ENST00000509769 CASTP20810 708 aaKnown RBP4.1□□□□□ -1.75
USP53-205ENST00000509769 KRT85P78386 507 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 CWC27Q6UX04 472 aaKnown RBP4.1□□□□□ -1.75
USP53-205ENST00000509769 VPS36Q86VN1 386 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 LRRC43Q8N309 656 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 TBC1D31Q96DN5 1066 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 ERO1AQ96HE7 468 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 RPGRIP1Q96KN7 1286 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 JAKMIP1Q96N16 626 aaKnown RBP4.1□□□□□ -1.75
USP53-205ENST00000509769 PLVAPQ9BX97 442 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 MIS12Q9H081 205 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 PLCB1Q9NQ66 1216 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 ANLNQ9NQW6 1124 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 TUBA8Q9NY65 449 aaPredicted RBP4.1□□□□□ -1.75
USP53-205ENST00000509769 SAMD15Q9P1V8 674 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 IKBKGQ9Y6K9 419 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 TMEM232C9JQI7 657 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 FLOT1O75955 427 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 EIF2S1P05198 315 aaKnown RBP4.1□□□□□ -1.75
USP53-205ENST00000509769 POTEJP0CG39 1038 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 NBPF9Q3BBW0 867 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 SPRYD3Q8NCJ5 442 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 GOLGA5Q8TBA6 731 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 TCP11Q8WWU5 503 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 JAKMIP2Q96AA8 810 aa4.1□□□□□ -1.75
USP53-205ENST00000509769 API5Q9BZZ5 524 aaKnown RBP4.1□□□□□ -1.75
USP53-205ENST00000509769 SETBP1Q9Y6X0 1596 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 RAD50Q92878 1312 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 MYBBP1AQ9BQG0 1328 aaKnown RBP4.09□□□□□ -1.75
USP53-205ENST00000509769 ROBO1Q9Y6N7 1651 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 A2MP01023 1474 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 CAPN2P17655 700 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 RFC1P35251 1148 aaPredicted RBP4.09□□□□□ -1.75
USP53-205ENST00000509769 TRAF1Q13077 416 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 ZBTB41Q5SVQ8 909 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 ZKSCAN2Q63HK3 967 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 SDCCAG8Q86SQ7 713 aaPredicted RBP4.09□□□□□ -1.75
USP53-205ENST00000509769 SDF4Q9BRK5 362 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 DRC3Q9H069 523 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 ODF2LQ9ULJ1 636 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 LRRFIP2Q9Y608 721 aaKnown RBP4.09□□□□□ -1.75
USP53-205ENST00000509769 MIA2Q96PC5 1412 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 FSD2A1L4K1 749 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 CTAGE9A4FU28 777 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 VPS37CA5D8V6 355 aaPredicted RBP4.09□□□□□ -1.75
USP53-205ENST00000509769 MARCH6O60337 910 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 PCK1P35558 622 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 STX17P56962 302 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 DHX9Q08211 1270 aaKnown RBP4.09□□□□□ -1.75
USP53-205ENST00000509769 NBPF20Q3BBV1 942 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 RUFY3Q7L099 469 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 HEATR3Q7Z4Q2 680 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 GOLGA1Q92805 767 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 CARD11Q9BXL7 1154 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 NRDE2Q9H7Z3 1164 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 DDX19AQ9NUU7 478 aaKnown RBP4.09□□□□□ -1.75
USP53-205ENST00000509769 BSDC1Q9NW68 430 aaPredicted RBP4.09□□□□□ -1.75
USP53-205ENST00000509769 GEMIN8Q9NWZ8 242 aaKnown RBP4.09□□□□□ -1.75
USP53-205ENST00000509769 RASAL2Q9UJF2 1139 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 ZKSCAN5Q9Y2L8 839 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 MROH1Q8NDA8 1641 aa4.09□□□□□ -1.75
USP53-205ENST00000509769 VIMP08670 466 aaKnown RBP4.09□□□□□ -1.76
USP53-205ENST00000509769 IBSPP21815 317 aaPredicted RBP4.09□□□□□ -1.76
USP53-205ENST00000509769 HNRNPMP52272 730 aaKnown RBP eCLIP4.09□□□□□ -1.76
USP53-205ENST00000509769 VAV2P52735 878 aa4.09□□□□□ -1.76
USP53-205ENST00000509769 LMNB2Q03252 620 aa4.09□□□□□ -1.76
USP53-205ENST00000509769 CEBPZQ03701 1054 aaKnown RBP4.09□□□□□ -1.76
USP53-205ENST00000509769 SPA17Q15506 151 aa4.09□□□□□ -1.76
USP53-205ENST00000509769 SAMD9Q5K651 1589 aa4.09□□□□□ -1.76
USP53-205ENST00000509769 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.09□□□□□ -1.76
USP53-205ENST00000509769 CACTINQ8WUQ7 758 aaKnown RBP4.09□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms