RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 NOB1Q9ULX3 412 aaKnown RBP11.54□□□□□ -0.56
NUP54-207ENST00000508583 DDX60Q8IY21 1712 aaKnown RBP11.53□□□□□ -0.56
NUP54-207ENST00000508583 SF3B3Q15393 1217 aaKnown RBP11.53□□□□□ -0.56
NUP54-207ENST00000508583 ZKSCAN2Q63HK3 967 aa11.53□□□□□ -0.56
NUP54-207ENST00000508583 PRPF40BQ6NWY9 871 aaKnown RBP11.53□□□□□ -0.56
NUP54-207ENST00000508583 FTSJ3Q8IY81 847 aaKnown RBP11.53□□□□□ -0.56
NUP54-207ENST00000508583 FRAT1Q92837 279 aaPredicted RBP11.53□□□□□ -0.56
NUP54-207ENST00000508583 MYH3P11055 1940 aa11.52□□□□□ -0.56
NUP54-207ENST00000508583 H7C1W4 665 aa11.52□□□□□ -0.57
NUP54-207ENST00000508583 CAPN15O75808 1086 aa11.52□□□□□ -0.57
NUP54-207ENST00000508583 BBOX1O75936 387 aa11.52□□□□□ -0.57
NUP54-207ENST00000508583 CTSWP56202 376 aa11.52□□□□□ -0.57
NUP54-207ENST00000508583 RTL5Q5HYW3 569 aaPredicted RBP11.52□□□□□ -0.57
NUP54-207ENST00000508583 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.52□□□□□ -0.57
NUP54-207ENST00000508583 PLA2G12BQ9BX93 195 aa11.52□□□□□ -0.57
NUP54-207ENST00000508583 RCAN3Q9UKA8 241 aa11.52□□□□□ -0.57
NUP54-207ENST00000508583 BCAR3O75815 825 aa11.51□□□□□ -0.57
NUP54-207ENST00000508583 CCDC93Q567U6 631 aa11.51□□□□□ -0.57
NUP54-207ENST00000508583 RTKN2Q8IZC4 609 aa11.51□□□□□ -0.57
NUP54-207ENST00000508583 CDC5LQ99459 802 aaKnown RBP11.51□□□□□ -0.57
NUP54-207ENST00000508583 CHD4Q14839 1912 aa11.5□□□□□ -0.57
NUP54-207ENST00000508583 PPEF1O14829 653 aaPredicted RBP11.5□□□□□ -0.57
NUP54-207ENST00000508583 TRIM27P14373 513 aa11.5□□□□□ -0.57
NUP54-207ENST00000508583 GRAPQ13588 217 aa11.5□□□□□ -0.57
NUP54-207ENST00000508583 ARHGAP27Q6ZUM4 889 aa11.5□□□□□ -0.57
NUP54-207ENST00000508583 SYNE4Q8N205 404 aa11.5□□□□□ -0.57
NUP54-207ENST00000508583 GRAPLQ8TC17 118 aaPredicted RBP11.5□□□□□ -0.57
NUP54-207ENST00000508583 UTYO14607 1347 aa11.5□□□□□ -0.57
NUP54-207ENST00000508583 ABCC4O15439 1325 aa11.5□□□□□ -0.57
NUP54-207ENST00000508583 RTL9Q8NET4 1388 aa11.5□□□□□ -0.57
NUP54-207ENST00000508583 C21orf2O43822 256 aa11.49□□□□□ -0.57
NUP54-207ENST00000508583 GNAI3P08754 354 aa11.49□□□□□ -0.57
NUP54-207ENST00000508583 INTS3Q68E01 1043 aaKnown RBP11.49□□□□□ -0.57
NUP54-207ENST00000508583 C3orf67Q6ZVT6 689 aa11.49□□□□□ -0.57
NUP54-207ENST00000508583 SLX4Q8IY92 1834 aa11.49□□□□□ -0.57
NUP54-207ENST00000508583 UBTFL1P0CB47 393 aaPredicted RBP11.48□□□□□ -0.57
NUP54-207ENST00000508583 CASP7P55210 303 aa11.48□□□□□ -0.57
NUP54-207ENST00000508583 ANKRD18AQ8IVF6 992 aa11.48□□□□□ -0.57
NUP54-207ENST00000508583 DZIP1LQ8IYY4 767 aaKnown RBP11.48□□□□□ -0.57
NUP54-207ENST00000508583 TTLL11Q8NHH1 800 aa11.48□□□□□ -0.57
NUP54-207ENST00000508583 TAOK3Q9H2K8 898 aa11.48□□□□□ -0.57
NUP54-207ENST00000508583 CHMP4BQ9H444 224 aaKnown RBP11.48□□□□□ -0.57
NUP54-207ENST00000508583 ATP6V0A2Q9Y487 856 aa11.48□□□□□ -0.57
NUP54-207ENST00000508583 LTBP3Q9NS15 1303 aa11.47□□□□□ -0.57
NUP54-207ENST00000508583 IGHMBP2P38935 993 aaKnown RBP11.47□□□□□ -0.57
NUP54-207ENST00000508583 RPS8P62241 208 aaKnown RBP11.47□□□□□ -0.57
NUP54-207ENST00000508583 IFIT5Q13325 482 aaKnown RBP11.47□□□□□ -0.57
NUP54-207ENST00000508583 CCDC57Q2TAC2 916 aa11.47□□□□□ -0.57
NUP54-207ENST00000508583 SP8Q8IXZ3 490 aa11.47□□□□□ -0.57
NUP54-207ENST00000508583 JARID2Q92833 1246 aaPredicted RBP11.47□□□□□ -0.57
NUP54-207ENST00000508583 ZNF219Q9P2Y4 722 aaPredicted RBP11.47□□□□□ -0.57
NUP54-207ENST00000508583 ZC3H4Q9UPT8 1303 aaKnown RBP11.46□□□□□ -0.57
NUP54-207ENST00000508583 ANKRD18BA2A2Z9 1011 aa11.46□□□□□ -0.57
NUP54-207ENST00000508583 CSF1RP07333 972 aa11.46□□□□□ -0.57
NUP54-207ENST00000508583 LMNB1P20700 586 aa11.46□□□□□ -0.57
NUP54-207ENST00000508583 FKBP4Q02790 459 aaKnown RBP eCLIP11.46□□□□□ -0.57
NUP54-207ENST00000508583 TAF7LQ5H9L4 462 aa11.46□□□□□ -0.57
NUP54-207ENST00000508583 SUPT20HQ8NEM7 779 aa11.46□□□□□ -0.57
NUP54-207ENST00000508583 C7orf43Q8WVR3 580 aa11.46□□□□□ -0.57
NUP54-207ENST00000508583 CLUAP1Q96AJ1 413 aa11.46□□□□□ -0.57
NUP54-207ENST00000508583 PSMD1Q99460 953 aa11.46□□□□□ -0.57
NUP54-207ENST00000508583 MPHOSPH8Q99549 860 aa11.46□□□□□ -0.57
NUP54-207ENST00000508583 USP44Q9H0E7 712 aa11.46□□□□□ -0.57
NUP54-207ENST00000508583 CHMP3Q9Y3E7 222 aa11.46□□□□□ -0.57
NUP54-207ENST00000508583 TAF1P21675 1872 aa11.46□□□□□ -0.58
NUP54-207ENST00000508583 FER1L6Q2WGJ9 1857 aa11.46□□□□□ -0.58
NUP54-207ENST00000508583 COL4A1P02462 1669 aa11.46□□□□□ -0.58
NUP54-207ENST00000508583 NBPF7P0C2Y1 421 aaPredicted RBP11.45□□□□□ -0.58
NUP54-207ENST00000508583 ITGA6P23229 1130 aa11.45□□□□□ -0.58
NUP54-207ENST00000508583 ITPRIPQ8IWB1 547 aa11.45□□□□□ -0.58
NUP54-207ENST00000508583 VPS33BQ9H267 617 aa11.45□□□□□ -0.58
NUP54-207ENST00000508583 GREM2Q9H772 168 aa11.45□□□□□ -0.58
NUP54-207ENST00000508583 TIAM2Q8IVF5 1701 aa11.44□□□□□ -0.58
NUP54-207ENST00000508583 FOXO4P98177 505 aa11.44□□□□□ -0.58
NUP54-207ENST00000508583 FAM161AQ3B820 660 aa11.44□□□□□ -0.58
NUP54-207ENST00000508583 LMBR1LQ6UX01 489 aa11.44□□□□□ -0.58
NUP54-207ENST00000508583 DPP8Q6V1X1 898 aaPredicted RBP11.44□□□□□ -0.58
NUP54-207ENST00000508583 SLC51AQ86UW1 340 aa11.44□□□□□ -0.58
NUP54-207ENST00000508583 MPNDQ8N594 471 aa11.44□□□□□ -0.58
NUP54-207ENST00000508583 TMEM57Q8N5G2 664 aa11.44□□□□□ -0.58
NUP54-207ENST00000508583 CELF1Q92879 486 aaKnown RBP11.44□□□□□ -0.58
NUP54-207ENST00000508583 SUCLG2Q96I99 432 aa11.44□□□□□ -0.58
NUP54-207ENST00000508583 CCDC85AQ96PX6 553 aaPredicted RBP11.44□□□□□ -0.58
NUP54-207ENST00000508583 BSDC1Q9NW68 430 aaPredicted RBP11.44□□□□□ -0.58
NUP54-207ENST00000508583 LRRC37AA6NMS7 1700 aa11.43□□□□□ -0.58
NUP54-207ENST00000508583 GNAI2P04899 355 aa11.43□□□□□ -0.58
NUP54-207ENST00000508583 YY1P25490 414 aa11.43□□□□□ -0.58
NUP54-207ENST00000508583 RASSF7Q02833 373 aa11.43□□□□□ -0.58
NUP54-207ENST00000508583 PDE3AQ14432 1141 aa11.43□□□□□ -0.58
NUP54-207ENST00000508583 RABL6Q3YEC7 729 aaPredicted RBP11.43□□□□□ -0.58
NUP54-207ENST00000508583 OLFM4Q6UX06 510 aa11.43□□□□□ -0.58
NUP54-207ENST00000508583 BICC1Q9H694 974 aaKnown RBP11.43□□□□□ -0.58
NUP54-207ENST00000508583 SEC31BQ9NQW1 1179 aa11.43□□□□□ -0.58
NUP54-207ENST00000508583 RNF181Q9P0P0 153 aa11.43□□□□□ -0.58
NUP54-207ENST00000508583 ANKIB1Q9P2G1 1089 aa11.43□□□□□ -0.58
NUP54-207ENST00000508583 DDX19BQ9UMR2 479 aa11.43□□□□□ -0.58
NUP54-207ENST00000508583 SPEF2Q9C093 1822 aa11.43□□□□□ -0.58
NUP54-207ENST00000508583 SBF1O95248 1867 aa11.42□□□□□ -0.58
NUP54-207ENST00000508583 NFKBIEO00221 500 aa11.42□□□□□ -0.58
NUP54-207ENST00000508583 C9orf131Q5VYM1 1079 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms