RNA–Protein interactions for RNA: ENST00000508342.5

NEDD4-208, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-208ENST00000508342 C5P01031 1676 aa3.55□□□□□ -1.84
NEDD4-208ENST00000508342 CELF2O95319 508 aaKnown RBP3.55□□□□□ -1.84
NEDD4-208ENST00000508342 PHKG2P15735 406 aa3.55□□□□□ -1.84
NEDD4-208ENST00000508342 FNBP4Q8N3X1 1017 aaPredicted RBP3.55□□□□□ -1.84
NEDD4-208ENST00000508342 ZGPATQ8N5A5 531 aaKnown RBP3.55□□□□□ -1.84
NEDD4-208ENST00000508342 ZNF277Q9NRM2 450 aaPredicted RBP3.55□□□□□ -1.84
NEDD4-208ENST00000508342 SRP68Q9UHB9 627 aaKnown RBP3.55□□□□□ -1.84
NEDD4-208ENST00000508342 CHRNA5P30532 468 aa3.55□□□□□ -1.84
NEDD4-208ENST00000508342 NFXL1Q6ZNB6 911 aa3.55□□□□□ -1.84
NEDD4-208ENST00000508342 CICQ96RK0 1608 aaPredicted RBP3.55□□□□□ -1.84
NEDD4-208ENST00000508342 ATRNO75882 1429 aa3.55□□□□□ -1.84
NEDD4-208ENST00000508342 GRIPAP1Q4V328 841 aa3.55□□□□□ -1.84
NEDD4-208ENST00000508342 CABP5Q9NP86 173 aa3.55□□□□□ -1.84
NEDD4-208ENST00000508342 XRN1Q8IZH2 1706 aaKnown RBP3.55□□□□□ -1.84
NEDD4-208ENST00000508342 CARMIL3Q8ND23 1372 aa3.55□□□□□ -1.84
NEDD4-208ENST00000508342 DPEP1P16444 411 aa3.55□□□□□ -1.84
NEDD4-208ENST00000508342 AOC3Q16853 763 aa3.55□□□□□ -1.84
NEDD4-208ENST00000508342 EP400NLQ6ZTU2 488 aa3.55□□□□□ -1.84
NEDD4-208ENST00000508342 SLC16A10Q8TF71 515 aa3.55□□□□□ -1.84
NEDD4-208ENST00000508342 ABCF2Q9UG63 623 aa3.55□□□□□ -1.84
NEDD4-208ENST00000508342 IRS4O14654 1257 aaPredicted RBP3.55□□□□□ -1.84
NEDD4-208ENST00000508342 GSE1Q14687 1217 aa3.55□□□□□ -1.84
NEDD4-208ENST00000508342 ODF2Q5BJF6 829 aa3.55□□□□□ -1.84
NEDD4-208ENST00000508342 CHMP4CQ96CF2 233 aa3.55□□□□□ -1.84
NEDD4-208ENST00000508342 SLC10A4Q96EP9 437 aa3.55□□□□□ -1.84
NEDD4-208ENST00000508342 THUMPD2Q9BTF0 503 aaKnown RBP3.55□□□□□ -1.84
NEDD4-208ENST00000508342 ASAP1Q9ULH1 1129 aa3.55□□□□□ -1.84
NEDD4-208ENST00000508342 AKAP2Q9Y2D5 859 aa3.55□□□□□ -1.84
NEDD4-208ENST00000508342 AATKQ6ZMQ8 1374 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 PLEKHG2Q9H7P9 1386 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 ZRANB2O95218 330 aaKnown RBP eCLIP3.54□□□□□ -1.84
NEDD4-208ENST00000508342 PPP2R1AP30153 589 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 IREB2P48200 963 aaKnown RBP3.54□□□□□ -1.84
NEDD4-208ENST00000508342 TPM4P67936 248 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 SF3A1Q15459 793 aaKnown RBP3.54□□□□□ -1.84
NEDD4-208ENST00000508342 HSP90AB4PQ58FF6 505 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 FOXD4L5Q5VV16 416 aaPredicted RBP3.54□□□□□ -1.84
NEDD4-208ENST00000508342 NBPF15Q8N660 670 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 ZC3H15Q8WU90 426 aaKnown RBP3.54□□□□□ -1.84
NEDD4-208ENST00000508342 FOXD4L4Q8WXT5 416 aaPredicted RBP3.54□□□□□ -1.84
NEDD4-208ENST00000508342 DPF3Q92784 378 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 UBA5Q9GZZ9 404 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 SPEF2Q9C093 1822 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 FKBP4Q02790 459 aaKnown RBP eCLIP3.54□□□□□ -1.84
NEDD4-208ENST00000508342 CCDC181Q5TID7 509 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 CIAPIN1Q6FI81 312 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 PNMA8AQ86V59 439 aaPredicted RBP3.54□□□□□ -1.84
NEDD4-208ENST00000508342 NRKQ7Z2Y5 1582 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 MAP3K19Q56UN5 1328 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 RGS3P49796 1198 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 PARP10Q53GL7 1025 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 ATF7IPQ6VMQ6 1270 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 SMCR8Q8TEV9 937 aaPredicted RBP3.54□□□□□ -1.84
NEDD4-208ENST00000508342 JARID2Q92833 1246 aaPredicted RBP3.54□□□□□ -1.84
NEDD4-208ENST00000508342 RILPL2Q969X0 211 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 PKNOX2Q96KN3 472 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 IARSP41252 1262 aaKnown RBP3.54□□□□□ -1.84
NEDD4-208ENST00000508342 TRDNQ13061 729 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 DLGAP5Q15398 846 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 TPD52L1Q16890 204 aaPredicted RBP3.54□□□□□ -1.84
NEDD4-208ENST00000508342 TSR1Q2NL82 804 aaKnown RBP3.54□□□□□ -1.84
NEDD4-208ENST00000508342 DUSP27Q5VZP5 1158 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 GTF3C5Q9Y5Q8 519 aaPredicted RBP3.54□□□□□ -1.84
NEDD4-208ENST00000508342 ARHGAP23Q9P227 1491 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 CHRM1P11229 460 aaPredicted RBP3.54□□□□□ -1.84
NEDD4-208ENST00000508342 TWISTNBQ3B726 338 aaPredicted RBP3.54□□□□□ -1.84
NEDD4-208ENST00000508342 ZSCAN25Q6NSZ9 544 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 LINC00116Q8NCU8 138 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 CCDC47Q96A33 483 aaKnown RBP3.54□□□□□ -1.84
NEDD4-208ENST00000508342 EYA1Q99502 592 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 LBHD1Q9BQE6 289 aaPredicted RBP3.54□□□□□ -1.84
NEDD4-208ENST00000508342 JAG2Q9Y219 1238 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 CD2APQ9Y5K6 639 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 TNS2Q63HR2 1409 aa3.54□□□□□ -1.84
NEDD4-208ENST00000508342 PLEKHG3A1L390 1219 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 TCP10L2B9ZVM9 353 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 FMNL1O95466 1100 aaPredicted RBP3.53□□□□□ -1.84
NEDD4-208ENST00000508342 RRP12Q5JTH9 1297 aaKnown RBP3.53□□□□□ -1.84
NEDD4-208ENST00000508342 MKL1Q969V6 931 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 BTAF1O14981 1849 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 COL15A1P39059 1388 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 ADAMTS13Q76LX8 1427 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 RAD17O75943 681 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 COL23A1Q86Y22 540 aaPredicted RBP3.53□□□□□ -1.84
NEDD4-208ENST00000508342 ANKRD13AQ8IZ07 590 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 PARD3Q8TEW0 1356 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 BAG3O95817 575 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 TPM2P07951 284 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 EPHX2P34913 555 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 MAP2K1Q02750 393 aaPredicted RBP3.53□□□□□ -1.84
NEDD4-208ENST00000508342 ERC1Q8IUD2 1116 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 ARHGEF1Q92888 912 aaKnown RBP3.53□□□□□ -1.84
NEDD4-208ENST00000508342 TSPYL2Q9H2G4 693 aaPredicted RBP3.53□□□□□ -1.84
NEDD4-208ENST00000508342 AS3MTQ9HBK9 375 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 JADE2Q9NQC1 790 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 SLC5A4Q9NY91 659 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 CHPF2Q9P2E5 772 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 PPP1R12BO60237 982 aaPredicted RBP3.53□□□□□ -1.84
NEDD4-208ENST00000508342 MTHFSDQ2M296 383 aaKnown RBP3.53□□□□□ -1.84
NEDD4-208ENST00000508342 TBC1D9BQ66K14 1250 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms