RNA–Protein interactions for RNA: ENST00000507247.5

RNF4-208, Transcript of ring finger protein 4, humanhuman

TSL 1 (best)

Gene RNF4, Length 616 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-208ENST00000507247 CSF1RP07333 972 aa17.73■□□□□ 0.43
RNF4-208ENST00000507247 RPAP2Q8IXW5 612 aaPredicted RBP17.73■□□□□ 0.43
RNF4-208ENST00000507247 TTLL11Q8NHH1 800 aa17.73■□□□□ 0.43
RNF4-208ENST00000507247 PPP1R1BQ9UD71 204 aaPredicted RBP17.73■□□□□ 0.43
RNF4-208ENST00000507247 COL4A1P02462 1669 aa17.73■□□□□ 0.43
RNF4-208ENST00000507247 PTGER2P43116 358 aa17.72■□□□□ 0.43
RNF4-208ENST00000507247 CCDC85AQ96PX6 553 aaPredicted RBP17.72■□□□□ 0.43
RNF4-208ENST00000507247 C10orf71Q711Q0 1435 aa17.72■□□□□ 0.43
RNF4-208ENST00000507247 SRGAP3O43295 1099 aa17.71■□□□□ 0.43
RNF4-208ENST00000507247 HSP90B1P14625 803 aaKnown RBP17.71■□□□□ 0.43
RNF4-208ENST00000507247 POLA2Q14181 598 aa17.71■□□□□ 0.43
RNF4-208ENST00000507247 SF3B3Q15393 1217 aaKnown RBP17.71■□□□□ 0.43
RNF4-208ENST00000507247 FAM161AQ3B820 660 aa17.71■□□□□ 0.43
RNF4-208ENST00000507247 SSH3Q8TE77 659 aa17.71■□□□□ 0.43
RNF4-208ENST00000507247 NLRP3Q96P20 1036 aa17.71■□□□□ 0.43
RNF4-208ENST00000507247 GREM2Q9H772 168 aa17.71■□□□□ 0.43
RNF4-208ENST00000507247 PPP4R2Q9NY27 417 aa17.71■□□□□ 0.43
RNF4-208ENST00000507247 CHMP3Q9Y3E7 222 aa17.71■□□□□ 0.43
RNF4-208ENST00000507247 KIAA1551Q9HCM1 1747 aa17.7■□□□□ 0.42
RNF4-208ENST00000507247 IGHDP01880 384 aa17.7■□□□□ 0.42
RNF4-208ENST00000507247 POLD1P28340 1107 aa17.7■□□□□ 0.42
RNF4-208ENST00000507247 RFX5P48382 616 aaPredicted RBP17.7■□□□□ 0.42
RNF4-208ENST00000507247 B4GALNT3Q6L9W6 998 aa17.69■□□□□ 0.42
RNF4-208ENST00000507247 BRIP1Q9BX63 1249 aa17.69■□□□□ 0.42
RNF4-208ENST00000507247 DLEC1Q9Y238 1755 aa17.68■□□□□ 0.42
RNF4-208ENST00000507247 RTL9Q8NET4 1388 aa17.68■□□□□ 0.42
RNF4-208ENST00000507247 KLRG2A4D1S0 409 aaPredicted RBP17.68■□□□□ 0.42
RNF4-208ENST00000507247 ITGA6P23229 1130 aa17.68■□□□□ 0.42
RNF4-208ENST00000507247 HDAC1Q13547 482 aaPredicted RBP17.68■□□□□ 0.42
RNF4-208ENST00000507247 CACNA1SQ13698 1873 aa17.68■□□□□ 0.42
RNF4-208ENST00000507247 CRY2Q49AN0 593 aa17.68■□□□□ 0.42
RNF4-208ENST00000507247 CCDC152Q4G0S7 254 aa17.68■□□□□ 0.42
RNF4-208ENST00000507247 KLHDC4Q8TBB5 520 aa17.68■□□□□ 0.42
RNF4-208ENST00000507247 SEC31BQ9NQW1 1179 aa17.68■□□□□ 0.42
RNF4-208ENST00000507247 HMMRO75330 724 aa17.67■□□□□ 0.42
RNF4-208ENST00000507247 CCDC136Q96JN2 1154 aa17.67■□□□□ 0.42
RNF4-208ENST00000507247 PA2G4Q9UQ80 394 aaKnown RBP17.67■□□□□ 0.42
RNF4-208ENST00000507247 PTPN12Q05209 780 aaKnown RBP17.66■□□□□ 0.42
RNF4-208ENST00000507247 IFIT5Q13325 482 aaKnown RBP17.66■□□□□ 0.42
RNF4-208ENST00000507247 ZNF594Q96JF6 807 aaPredicted RBP17.66■□□□□ 0.42
RNF4-208ENST00000507247 ANKRD18BA2A2Z9 1011 aa17.65■□□□□ 0.42
RNF4-208ENST00000507247 PDE6BP35913 854 aa17.65■□□□□ 0.42
RNF4-208ENST00000507247 CCDC57Q2TAC2 916 aa17.65■□□□□ 0.42
RNF4-208ENST00000507247 RWDD1Q9H446 243 aaPredicted RBP17.65■□□□□ 0.42
RNF4-208ENST00000507247 A0A1B0GUL6 1792 aa17.65■□□□□ 0.42
RNF4-208ENST00000507247 KDM2BQ8NHM5 1336 aa17.65■□□□□ 0.42
RNF4-208ENST00000507247 COPRSQ9NQ92 184 aa17.64■□□□□ 0.41
RNF4-208ENST00000507247 SRGNP10124 158 aa17.63■□□□□ 0.41
RNF4-208ENST00000507247 C2CD5Q86YS7 1000 aa17.63■□□□□ 0.41
RNF4-208ENST00000507247 RPGRQ92834 1020 aaKnown RBP17.63■□□□□ 0.41
RNF4-208ENST00000507247 CELF1Q92879 486 aaKnown RBP17.63■□□□□ 0.41
RNF4-208ENST00000507247 DCTPP1Q9H773 170 aa17.63■□□□□ 0.41
RNF4-208ENST00000507247 EXOC6BQ9Y2D4 811 aa17.63■□□□□ 0.41
RNF4-208ENST00000507247 BRCA1P38398 1863 aaKnown RBP17.63■□□□□ 0.41
RNF4-208ENST00000507247 SURF6O75683 361 aaKnown RBP17.62■□□□□ 0.41
RNF4-208ENST00000507247 CHRNA5P30532 468 aa17.62■□□□□ 0.41
RNF4-208ENST00000507247 HOXA10P31260 410 aaPredicted RBP17.62■□□□□ 0.41
RNF4-208ENST00000507247 DDX46Q7L014 1031 aaKnown RBP17.62■□□□□ 0.41
RNF4-208ENST00000507247 PUS3Q9BZE2 481 aaKnown RBP17.62■□□□□ 0.41
RNF4-208ENST00000507247 FHDC1Q9C0D6 1143 aaPredicted RBP17.62■□□□□ 0.41
RNF4-208ENST00000507247 SIL1Q9H173 461 aa17.62■□□□□ 0.41
RNF4-208ENST00000507247 NOP58Q9Y2X3 529 aaKnown RBP17.62■□□□□ 0.41
RNF4-208ENST00000507247 NPR1P16066 1061 aa17.61■□□□□ 0.41
RNF4-208ENST00000507247 LRRC24Q50LG9 513 aa17.61■□□□□ 0.41
RNF4-208ENST00000507247 TAF7LQ5H9L4 462 aa17.61■□□□□ 0.41
RNF4-208ENST00000507247 SMC5Q8IY18 1101 aa17.61■□□□□ 0.41
RNF4-208ENST00000507247 RBM17Q96I25 401 aaKnown RBP17.61■□□□□ 0.41
RNF4-208ENST00000507247 CDC5LQ99459 802 aaKnown RBP17.61■□□□□ 0.41
RNF4-208ENST00000507247 LRRC37AA6NMS7 1700 aa17.61■□□□□ 0.41
RNF4-208ENST00000507247 SLX4Q8IY92 1834 aa17.61■□□□□ 0.41
RNF4-208ENST00000507247 H0YIN7 160 aa17.6■□□□□ 0.41
RNF4-208ENST00000507247 GRAPQ13588 217 aa17.6■□□□□ 0.41
RNF4-208ENST00000507247 ATG9AQ7Z3C6 839 aa17.6■□□□□ 0.41
RNF4-208ENST00000507247 ANKRD18AQ8IVF6 992 aa17.6■□□□□ 0.41
RNF4-208ENST00000507247 GRAPLQ8TC17 118 aaPredicted RBP17.6■□□□□ 0.41
RNF4-208ENST00000507247 MASTLQ96GX5 879 aa17.6■□□□□ 0.41
RNF4-208ENST00000507247 CRAMP1Q96RY5 1269 aa17.6■□□□□ 0.41
RNF4-208ENST00000507247 SYT17Q9BSW7 474 aa17.6■□□□□ 0.41
RNF4-208ENST00000507247 EYA2O00167 538 aa17.59■□□□□ 0.41
RNF4-208ENST00000507247 IGHMBP2P38935 993 aaKnown RBP17.59■□□□□ 0.41
RNF4-208ENST00000507247 RPS8P62241 208 aaKnown RBP17.59■□□□□ 0.41
RNF4-208ENST00000507247 CENPQQ7L2Z9 268 aaPredicted RBP17.59■□□□□ 0.41
RNF4-208ENST00000507247 SLC51AQ86UW1 340 aa17.59■□□□□ 0.41
RNF4-208ENST00000507247 KLHL34Q8N239 644 aa17.59■□□□□ 0.41
RNF4-208ENST00000507247 GCC1Q96CN9 775 aa17.59■□□□□ 0.41
RNF4-208ENST00000507247 PDZRN3Q9UPQ7 1066 aa17.59■□□□□ 0.41
RNF4-208ENST00000507247 APBB1O00213 710 aa17.58■□□□□ 0.4
RNF4-208ENST00000507247 CIAO1O76071 339 aa17.58■□□□□ 0.4
RNF4-208ENST00000507247 SASH1O94885 1247 aa17.58■□□□□ 0.4
RNF4-208ENST00000507247 DPEP1P16444 411 aa17.58■□□□□ 0.4
RNF4-208ENST00000507247 KCNA3P22001 575 aa17.58■□□□□ 0.4
RNF4-208ENST00000507247 G3BP1Q13283 466 aaKnown RBP eCLIP17.58■□□□□ 0.4
RNF4-208ENST00000507247 STYK1Q6J9G0 422 aa17.58■□□□□ 0.4
RNF4-208ENST00000507247 LDHAL6AQ6ZMR3 332 aa17.58■□□□□ 0.4
RNF4-208ENST00000507247 ZNF622Q969S3 477 aaKnown RBP eCLIP17.58■□□□□ 0.4
RNF4-208ENST00000507247 RIPOR2Q9Y4F9 1068 aa17.58■□□□□ 0.4
RNF4-208ENST00000507247 CD2APQ9Y5K6 639 aa17.58■□□□□ 0.4
RNF4-208ENST00000507247 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.58■□□□□ 0.4
RNF4-208ENST00000507247 A0A0G2JLW4 131 aa17.57■□□□□ 0.4
RNF4-208ENST00000507247 TGFB2P61812 414 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms