RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 CNTROBQ8N137 903 aa16.81■□□□□ 0.28
TCOF1-209ENST00000506630 SCN4AP35499 1836 aa16.81■□□□□ 0.28
TCOF1-209ENST00000506630 MYH3P11055 1940 aa16.8■□□□□ 0.28
TCOF1-209ENST00000506630 RNF123Q5XPI4 1314 aa16.8■□□□□ 0.28
TCOF1-209ENST00000506630 RASSF10A6NK89 507 aa16.8■□□□□ 0.28
TCOF1-209ENST00000506630 SLC4A2P04920 1241 aa16.8■□□□□ 0.28
TCOF1-209ENST00000506630 IARSP41252 1262 aaKnown RBP16.8■□□□□ 0.28
TCOF1-209ENST00000506630 MAP2K1Q02750 393 aaPredicted RBP16.8■□□□□ 0.28
TCOF1-209ENST00000506630 MAP1SQ66K74 1059 aaPredicted RBP16.8■□□□□ 0.28
TCOF1-209ENST00000506630 NLRP10Q86W26 655 aa16.8■□□□□ 0.28
TCOF1-209ENST00000506630 JDP2Q8WYK2 163 aa16.8■□□□□ 0.28
TCOF1-209ENST00000506630 UTP14AQ9BVJ6 771 aaKnown RBP16.8■□□□□ 0.28
TCOF1-209ENST00000506630 RIC1Q4ADV7 1423 aa16.79■□□□□ 0.28
TCOF1-209ENST00000506630 ATP5J2-PTCD1G3V325 749 aa16.79■□□□□ 0.28
TCOF1-209ENST00000506630 FZD9O00144 591 aa16.79■□□□□ 0.28
TCOF1-209ENST00000506630 GPC2Q8N158 579 aa16.79■□□□□ 0.28
TCOF1-209ENST00000506630 SYNE4Q8N205 404 aa16.79■□□□□ 0.28
TCOF1-209ENST00000506630 ABT1Q9ULW3 272 aaKnown RBP16.79■□□□□ 0.28
TCOF1-209ENST00000506630 TAF1P21675 1872 aa16.79■□□□□ 0.28
TCOF1-209ENST00000506630 SLFN5Q08AF3 891 aa16.78■□□□□ 0.28
TCOF1-209ENST00000506630 G2E3Q7L622 706 aa16.78■□□□□ 0.28
TCOF1-209ENST00000506630 CDCA7LQ96GN5 454 aa16.78■□□□□ 0.28
TCOF1-209ENST00000506630 MYD88Q99836 296 aa16.78■□□□□ 0.28
TCOF1-209ENST00000506630 WDR33Q9C0J8 1336 aaKnown RBP16.77■□□□□ 0.28
TCOF1-209ENST00000506630 FLIIQ13045 1269 aa16.77■□□□□ 0.28
TCOF1-209ENST00000506630 ISCA1Q9BUE6 129 aa16.77■□□□□ 0.28
TCOF1-209ENST00000506630 TRMT112Q9UI30 125 aaKnown RBP16.77■□□□□ 0.28
TCOF1-209ENST00000506630 MAP3K2Q9Y2U5 619 aa16.77■□□□□ 0.28
TCOF1-209ENST00000506630 SH3TC1Q8TE82 1336 aa16.76■□□□□ 0.27
TCOF1-209ENST00000506630 PI4KAP2A4QPH2 592 aa16.76■□□□□ 0.27
TCOF1-209ENST00000506630 HSPA8P11142 646 aaKnown RBP16.76■□□□□ 0.27
TCOF1-209ENST00000506630 LMOD1P29536 600 aaPredicted RBP16.76■□□□□ 0.27
TCOF1-209ENST00000506630 EIF6P56537 245 aaKnown RBP16.76■□□□□ 0.27
TCOF1-209ENST00000506630 HNRNPUQ00839 825 aaKnown RBP eCLIP16.76■□□□□ 0.27
TCOF1-209ENST00000506630 CC2D2BQ6DHV5 1058 aa16.76■□□□□ 0.27
TCOF1-209ENST00000506630 KSR2Q6VAB6 950 aa16.76■□□□□ 0.27
TCOF1-209ENST00000506630 PI4KAP1Q8N8J0 262 aa16.76■□□□□ 0.27
TCOF1-209ENST00000506630 ABHD8Q96I13 439 aa16.76■□□□□ 0.27
TCOF1-209ENST00000506630 BEGAINQ9BUH8 593 aa16.76■□□□□ 0.27
TCOF1-209ENST00000506630 SNED1Q8TER0 1413 aa16.76■□□□□ 0.27
TCOF1-209ENST00000506630 FKBP5Q13451 457 aaPredicted RBP16.75■□□□□ 0.27
TCOF1-209ENST00000506630 CRY2Q49AN0 593 aa16.75■□□□□ 0.27
TCOF1-209ENST00000506630 RPGRQ92834 1020 aaKnown RBP16.75■□□□□ 0.27
TCOF1-209ENST00000506630 PSMD1Q99460 953 aa16.75■□□□□ 0.27
TCOF1-209ENST00000506630 METTL22Q9BUU2 404 aaPredicted RBP16.75■□□□□ 0.27
TCOF1-209ENST00000506630 GJA3Q9Y6H8 435 aa16.75■□□□□ 0.27
TCOF1-209ENST00000506630 PAXIP1Q6ZW49 1069 aaPredicted RBP16.74■□□□□ 0.27
TCOF1-209ENST00000506630 NLRP3Q96P20 1036 aa16.74■□□□□ 0.27
TCOF1-209ENST00000506630 COL4A5P29400 1685 aa16.74■□□□□ 0.27
TCOF1-209ENST00000506630 HCLS1P14317 486 aaPredicted RBP16.73■□□□□ 0.27
TCOF1-209ENST00000506630 ECE1P42892 770 aa16.73■□□□□ 0.27
TCOF1-209ENST00000506630 NEXNQ0ZGT2 675 aa16.73■□□□□ 0.27
TCOF1-209ENST00000506630 TRIM28Q13263 835 aaKnown RBP16.73■□□□□ 0.27
TCOF1-209ENST00000506630 GRIPAP1Q4V328 841 aa16.73■□□□□ 0.27
TCOF1-209ENST00000506630 RTL5Q5HYW3 569 aaPredicted RBP16.73■□□□□ 0.27
TCOF1-209ENST00000506630 FAM89AQ96GI7 184 aa16.73■□□□□ 0.27
TCOF1-209ENST00000506630 SPEF2Q9C093 1822 aa16.73■□□□□ 0.27
TCOF1-209ENST00000506630 SLC10A5Q5PT55 438 aa16.72■□□□□ 0.27
TCOF1-209ENST00000506630 CCDC191Q8NCU4 936 aa16.72■□□□□ 0.27
TCOF1-209ENST00000506630 CWC25Q9NXE8 425 aaPredicted RBP16.72■□□□□ 0.27
TCOF1-209ENST00000506630 ADAMTSL1Q8N6G6 1762 aa16.72■□□□□ 0.27
TCOF1-209ENST00000506630 TRMT2AQ8IZ69 625 aaKnown RBP16.71■□□□□ 0.27
TCOF1-209ENST00000506630 LARGE2Q8N3Y3 721 aa16.71■□□□□ 0.27
TCOF1-209ENST00000506630 RBM17Q96I25 401 aaKnown RBP16.71■□□□□ 0.27
TCOF1-209ENST00000506630 CAPNS2Q96L46 248 aa16.71■□□□□ 0.27
TCOF1-209ENST00000506630 COL4A1P02462 1669 aa16.71■□□□□ 0.27
TCOF1-209ENST00000506630 HOXA10P31260 410 aaPredicted RBP16.7■□□□□ 0.26
TCOF1-209ENST00000506630 GRM1Q13255 1194 aa16.7■□□□□ 0.26
TCOF1-209ENST00000506630 FAM161AQ3B820 660 aa16.7■□□□□ 0.26
TCOF1-209ENST00000506630 USP50Q70EL3 339 aaPredicted RBP16.7■□□□□ 0.26
TCOF1-209ENST00000506630 DNAAF4Q8WXU2 420 aa16.7■□□□□ 0.26
TCOF1-209ENST00000506630 GPR101Q96P66 508 aaPredicted RBP16.7■□□□□ 0.26
TCOF1-209ENST00000506630 IRS4O14654 1257 aaPredicted RBP16.69■□□□□ 0.26
TCOF1-209ENST00000506630 IGKV5-2P06315 115 aa16.69■□□□□ 0.26
TCOF1-209ENST00000506630 EPS15P42566 896 aa16.69■□□□□ 0.26
TCOF1-209ENST00000506630 CWF19L2Q2TBE0 894 aaKnown RBP16.69■□□□□ 0.26
TCOF1-209ENST00000506630 ZBTB38Q8NAP3 1195 aaPredicted RBP16.69■□□□□ 0.26
TCOF1-209ENST00000506630 BCL2L13Q9BXK5 485 aa16.69■□□□□ 0.26
TCOF1-209ENST00000506630 TMX4Q9H1E5 349 aaPredicted RBP16.69■□□□□ 0.26
TCOF1-209ENST00000506630 NEURL1BA8MQ27 555 aa16.68■□□□□ 0.26
TCOF1-209ENST00000506630 F6X3S4 739 aa16.68■□□□□ 0.26
TCOF1-209ENST00000506630 SLC34A2O95436 690 aa16.68■□□□□ 0.26
TCOF1-209ENST00000506630 PCCAP05165 728 aaPredicted RBP16.68■□□□□ 0.26
TCOF1-209ENST00000506630 SCNN1DP51172 638 aa16.68■□□□□ 0.26
TCOF1-209ENST00000506630 NIM1KQ8IY84 436 aa16.68■□□□□ 0.26
TCOF1-209ENST00000506630 MRPL50Q8N5N7 158 aaKnown RBP16.68■□□□□ 0.26
TCOF1-209ENST00000506630 JARID2Q92833 1246 aaPredicted RBP16.68■□□□□ 0.26
TCOF1-209ENST00000506630 ABCC4O15439 1325 aa16.68■□□□□ 0.26
TCOF1-209ENST00000506630 CCDC85CA6NKD9 419 aa16.67■□□□□ 0.26
TCOF1-209ENST00000506630 MLLT1Q03111 559 aaPredicted RBP16.67■□□□□ 0.26
TCOF1-209ENST00000506630 CYP4F22Q6NT55 531 aa16.67■□□□□ 0.26
TCOF1-209ENST00000506630 DDX46Q7L014 1031 aaKnown RBP16.67■□□□□ 0.26
TCOF1-209ENST00000506630 SSH1Q8WYL5 1049 aa16.67■□□□□ 0.26
TCOF1-209ENST00000506630 CRAMP1Q96RY5 1269 aa16.67■□□□□ 0.26
TCOF1-209ENST00000506630 LRRC37AA6NMS7 1700 aa16.66■□□□□ 0.26
TCOF1-209ENST00000506630 PPEF1O14829 653 aaPredicted RBP16.66■□□□□ 0.26
TCOF1-209ENST00000506630 CT47B1P0C2W7 299 aaPredicted RBP16.66■□□□□ 0.26
TCOF1-209ENST00000506630 HSP90B1P14625 803 aaKnown RBP16.66■□□□□ 0.26
TCOF1-209ENST00000506630 MAP2K2P36507 400 aa16.66■□□□□ 0.26
TCOF1-209ENST00000506630 FMR1Q06787 632 aaKnown RBP eCLIP16.66■□□□□ 0.262e-7■■■■□ 19.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms