RNA–Protein interactions for RNA: ENST00000504380.1

PDLIM7-212, Transcript of PDZ and LIM domain 7, humanhuman

TSL 2

Gene PDLIM7, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-212ENST00000504380 TGFB2P61812 414 aa16.69■□□□□ 0.26
PDLIM7-212ENST00000504380 C1orf115Q9H7X2 142 aa16.69■□□□□ 0.26
PDLIM7-212ENST00000504380 KLRG2A4D1S0 409 aaPredicted RBP16.68■□□□□ 0.26
PDLIM7-212ENST00000504380 SRGNP10124 158 aa16.68■□□□□ 0.26
PDLIM7-212ENST00000504380 CTSWP56202 376 aa16.68■□□□□ 0.26
PDLIM7-212ENST00000504380 GPR162Q16538 588 aa16.68■□□□□ 0.26
PDLIM7-212ENST00000504380 CRBNQ96SW2 442 aa16.68■□□□□ 0.26
PDLIM7-212ENST00000504380 LRRFIP2Q9Y608 721 aaKnown RBP16.68■□□□□ 0.26
PDLIM7-212ENST00000504380 TAF1P21675 1872 aa16.67■□□□□ 0.26
PDLIM7-212ENST00000504380 COL4A1P02462 1669 aa16.67■□□□□ 0.26
PDLIM7-212ENST00000504380 SF3B3Q15393 1217 aaKnown RBP16.67■□□□□ 0.26
PDLIM7-212ENST00000504380 CRY2Q49AN0 593 aa16.67■□□□□ 0.26
PDLIM7-212ENST00000504380 LMBR1LQ6UX01 489 aa16.67■□□□□ 0.26
PDLIM7-212ENST00000504380 SLC51AQ86UW1 340 aa16.67■□□□□ 0.26
PDLIM7-212ENST00000504380 TTLL11Q8NHH1 800 aa16.67■□□□□ 0.26
PDLIM7-212ENST00000504380 RPGRQ92834 1020 aaKnown RBP16.67■□□□□ 0.26
PDLIM7-212ENST00000504380 PLA2G12BQ9BX93 195 aa16.67■□□□□ 0.26
PDLIM7-212ENST00000504380 BICC1Q9H694 974 aaKnown RBP16.67■□□□□ 0.26
PDLIM7-212ENST00000504380 SEC31BQ9NQW1 1179 aa16.67■□□□□ 0.26
PDLIM7-212ENST00000504380 CHMP3Q9Y3E7 222 aa16.67■□□□□ 0.26
PDLIM7-212ENST00000504380 RIC1Q4ADV7 1423 aa16.67■□□□□ 0.26
PDLIM7-212ENST00000504380 GNAI3P08754 354 aa16.66■□□□□ 0.26
PDLIM7-212ENST00000504380 ANKRD44Q8N8A2 993 aa16.66■□□□□ 0.26
PDLIM7-212ENST00000504380 MASTLQ96GX5 879 aa16.66■□□□□ 0.26
PDLIM7-212ENST00000504380 GREM2Q9H772 168 aa16.66■□□□□ 0.26
PDLIM7-212ENST00000504380 ZNF219Q9P2Y4 722 aaPredicted RBP16.66■□□□□ 0.26
PDLIM7-212ENST00000504380 MYH3P11055 1940 aa16.65■□□□□ 0.26
PDLIM7-212ENST00000504380 CSF1RP07333 972 aa16.65■□□□□ 0.26
PDLIM7-212ENST00000504380 NPR1P16066 1061 aa16.65■□□□□ 0.26
PDLIM7-212ENST00000504380 FAM161AQ3B820 660 aa16.65■□□□□ 0.26
PDLIM7-212ENST00000504380 STYK1Q6J9G0 422 aa16.65■□□□□ 0.26
PDLIM7-212ENST00000504380 PELP1Q8IZL8 1130 aaKnown RBP16.65■□□□□ 0.26
PDLIM7-212ENST00000504380 RBM17Q96I25 401 aaKnown RBP16.65■□□□□ 0.26
PDLIM7-212ENST00000504380 DDX19BQ9UMR2 479 aa16.65■□□□□ 0.26
PDLIM7-212ENST00000504380 CACNA1SQ13698 1873 aa16.65■□□□□ 0.26
PDLIM7-212ENST00000504380 GNAI2P04899 355 aa16.64■□□□□ 0.25
PDLIM7-212ENST00000504380 HSP90B1P14625 803 aaKnown RBP16.64■□□□□ 0.25
PDLIM7-212ENST00000504380 CCDC152Q4G0S7 254 aa16.64■□□□□ 0.25
PDLIM7-212ENST00000504380 DDX46Q7L014 1031 aaKnown RBP16.64■□□□□ 0.25
PDLIM7-212ENST00000504380 PIM2Q9P1W9 311 aa16.64■□□□□ 0.25
PDLIM7-212ENST00000504380 DLEC1Q9Y238 1755 aa16.64■□□□□ 0.25
PDLIM7-212ENST00000504380 HOXA10P31260 410 aaPredicted RBP16.63■□□□□ 0.25
PDLIM7-212ENST00000504380 CELF1Q92879 486 aaKnown RBP16.63■□□□□ 0.25
PDLIM7-212ENST00000504380 PDZRN3Q9UPQ7 1066 aa16.63■□□□□ 0.25
PDLIM7-212ENST00000504380 BCS1LQ9Y276 419 aa16.63■□□□□ 0.25
PDLIM7-212ENST00000504380 SLX4Q8IY92 1834 aa16.62■□□□□ 0.25
PDLIM7-212ENST00000504380 ITGA6P23229 1130 aa16.62■□□□□ 0.25
PDLIM7-212ENST00000504380 RABL6Q3YEC7 729 aaPredicted RBP16.62■□□□□ 0.25
PDLIM7-212ENST00000504380 OLFM4Q6UX06 510 aa16.62■□□□□ 0.25
PDLIM7-212ENST00000504380 TTLL6Q8N841 843 aa16.62■□□□□ 0.25
PDLIM7-212ENST00000504380 EXOC6Q8TAG9 804 aa16.62■□□□□ 0.25
PDLIM7-212ENST00000504380 ZNF594Q96JF6 807 aaPredicted RBP16.62■□□□□ 0.25
PDLIM7-212ENST00000504380 CRAMP1Q96RY5 1269 aa16.62■□□□□ 0.25
PDLIM7-212ENST00000504380 ZBTB40Q9NUA8 1239 aa16.62■□□□□ 0.25
PDLIM7-212ENST00000504380 GOLGB1Q14789 3259 aaKnown RBP16.62■□□□□ 0.25
PDLIM7-212ENST00000504380 BRCA1P38398 1863 aaKnown RBP16.61■□□□□ 0.25
PDLIM7-212ENST00000504380 GRAPQ13588 217 aa16.61■□□□□ 0.25
PDLIM7-212ENST00000504380 DALRD3Q5D0E6 543 aaKnown RBP16.61■□□□□ 0.25
PDLIM7-212ENST00000504380 PRPF40BQ6NWY9 871 aaKnown RBP16.61■□□□□ 0.25
PDLIM7-212ENST00000504380 GRAPLQ8TC17 118 aaPredicted RBP16.61■□□□□ 0.25
PDLIM7-212ENST00000504380 CNKSR1Q969H4 720 aa16.61■□□□□ 0.25
PDLIM7-212ENST00000504380 ALDH1B1P30837 517 aa16.6■□□□□ 0.25
PDLIM7-212ENST00000504380 KLHDC4Q8TBB5 520 aa16.6■□□□□ 0.25
PDLIM7-212ENST00000504380 SPEF2Q9C093 1822 aa16.59■□□□□ 0.25
PDLIM7-212ENST00000504380 PNMA6EA0A0J9YXQ4 647 aa16.59■□□□□ 0.25
PDLIM7-212ENST00000504380 ANKRD18BA2A2Z9 1011 aa16.59■□□□□ 0.25
PDLIM7-212ENST00000504380 PPEF1O14829 653 aaPredicted RBP16.59■□□□□ 0.25
PDLIM7-212ENST00000504380 C21orf2O43822 256 aa16.59■□□□□ 0.25
PDLIM7-212ENST00000504380 YBX3P16989 372 aaKnown RBP eCLIP16.59■□□□□ 0.25
PDLIM7-212ENST00000504380 IFIT5Q13325 482 aaKnown RBP16.59■□□□□ 0.25
PDLIM7-212ENST00000504380 HDAC5Q9UQL6 1122 aa16.59■□□□□ 0.25
PDLIM7-212ENST00000504380 RFX5P48382 616 aaPredicted RBP16.58■□□□□ 0.24
PDLIM7-212ENST00000504380 RPS8P62241 208 aaKnown RBP16.58■□□□□ 0.24
PDLIM7-212ENST00000504380 CCDC57Q2TAC2 916 aa16.58■□□□□ 0.24
PDLIM7-212ENST00000504380 ANKRD18AQ8IVF6 992 aa16.58■□□□□ 0.24
PDLIM7-212ENST00000504380 PA2G4Q9UQ80 394 aaKnown RBP16.58■□□□□ 0.24
PDLIM7-212ENST00000504380 RTL9Q8NET4 1388 aa16.58■□□□□ 0.24
PDLIM7-212ENST00000504380 SRGAP3O43295 1099 aa16.57■□□□□ 0.24
PDLIM7-212ENST00000504380 ATP8B2P98198 1209 aa16.57■□□□□ 0.24
PDLIM7-212ENST00000504380 TAF7LQ5H9L4 462 aa16.57■□□□□ 0.24
PDLIM7-212ENST00000504380 CEP85Q6P2H3 762 aa16.57■□□□□ 0.24
PDLIM7-212ENST00000504380 C7orf43Q8WVR3 580 aa16.57■□□□□ 0.24
PDLIM7-212ENST00000504380 CDC5LQ99459 802 aaKnown RBP16.57■□□□□ 0.24
PDLIM7-212ENST00000504380 PUS3Q9BZE2 481 aaKnown RBP16.57■□□□□ 0.24
PDLIM7-212ENST00000504380 GRIN3BO60391 1043 aa16.56■□□□□ 0.24
PDLIM7-212ENST00000504380 BBOX1O75936 387 aa16.56■□□□□ 0.24
PDLIM7-212ENST00000504380 IGHMBP2P38935 993 aaKnown RBP16.55■□□□□ 0.24
PDLIM7-212ENST00000504380 LRRC24Q50LG9 513 aa16.55■□□□□ 0.24
PDLIM7-212ENST00000504380 SIRT2Q8IXJ6 389 aa16.55■□□□□ 0.24
PDLIM7-212ENST00000504380 SIL1Q9H173 461 aa16.55■□□□□ 0.24
PDLIM7-212ENST00000504380 CHMP4BQ9H444 224 aaKnown RBP16.55■□□□□ 0.24
PDLIM7-212ENST00000504380 PCDHB15Q9Y5E8 787 aa16.55■□□□□ 0.24
PDLIM7-212ENST00000504380 PTPN12Q05209 780 aaKnown RBP16.54■□□□□ 0.24
PDLIM7-212ENST00000504380 MTX1Q13505 466 aa16.54■□□□□ 0.24
PDLIM7-212ENST00000504380 MPHOSPH8Q99549 860 aa16.54■□□□□ 0.24
PDLIM7-212ENST00000504380 ATP6V0A2Q9Y487 856 aa16.54■□□□□ 0.24
PDLIM7-212ENST00000504380 HSPA6P17066 643 aa16.53■□□□□ 0.24
PDLIM7-212ENST00000504380 GPSM2P81274 684 aa16.53■□□□□ 0.24
PDLIM7-212ENST00000504380 LDHAL6AQ6ZMR3 332 aa16.53■□□□□ 0.24
PDLIM7-212ENST00000504380 ARHGAP27Q6ZUM4 889 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms