RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 ZNF622Q969S3 477 aaKnown RBP eCLIP14.94□□□□□ -0.027e-8■■□□□ 11.4
CUX1-210ENST00000497815 KAZALD1Q96I82 304 aa14.94□□□□□ -0.02
CUX1-210ENST00000497815 CRBNQ96SW2 442 aa14.94□□□□□ -0.02
CUX1-210ENST00000497815 BICC1Q9H694 974 aaKnown RBP14.94□□□□□ -0.02
CUX1-210ENST00000497815 C1orf115Q9H7X2 142 aa14.94□□□□□ -0.02
CUX1-210ENST00000497815 DDX19BQ9UMR2 479 aa14.94□□□□□ -0.02
CUX1-210ENST00000497815 CHMP3Q9Y3E7 222 aa14.94□□□□□ -0.02
CUX1-210ENST00000497815 LRRFIP2Q9Y608 721 aaKnown RBP14.94□□□□□ -0.02
CUX1-210ENST00000497815 KIF13BQ9NQT8 1826 aa14.94□□□□□ -0.02
CUX1-210ENST00000497815 LAMB2P55268 1798 aa14.93□□□□□ -0.02
CUX1-210ENST00000497815 COL11A2P13942 1736 aaPredicted RBP14.93□□□□□ -0.02
CUX1-210ENST00000497815 KLRG2A4D1S0 409 aaPredicted RBP14.93□□□□□ -0.02
CUX1-210ENST00000497815 SRGNP10124 158 aa14.93□□□□□ -0.02
CUX1-210ENST00000497815 CRY2Q49AN0 593 aa14.93□□□□□ -0.02
CUX1-210ENST00000497815 LMBR1LQ6UX01 489 aa14.93□□□□□ -0.02
CUX1-210ENST00000497815 PLA2G12BQ9BX93 195 aa14.93□□□□□ -0.02
CUX1-210ENST00000497815 GNAI2P04899 355 aa14.92□□□□□ -0.02
CUX1-210ENST00000497815 NPR1P16066 1061 aa14.92□□□□□ -0.02
CUX1-210ENST00000497815 SF3B3Q15393 1217 aaKnown RBP14.92□□□□□ -0.02
CUX1-210ENST00000497815 CCDC152Q4G0S7 254 aa14.92□□□□□ -0.02
CUX1-210ENST00000497815 TTLL11Q8NHH1 800 aa14.92□□□□□ -0.02
CUX1-210ENST00000497815 MASTLQ96GX5 879 aa14.92□□□□□ -0.02
CUX1-210ENST00000497815 RBM17Q96I25 401 aaKnown RBP14.92□□□□□ -0.02
CUX1-210ENST00000497815 GREM2Q9H772 168 aa14.92□□□□□ -0.02
CUX1-210ENST00000497815 PDZRN3Q9UPQ7 1066 aa14.92□□□□□ -0.02
CUX1-210ENST00000497815 KIAA1551Q9HCM1 1747 aa14.92□□□□□ -0.02
CUX1-210ENST00000497815 KCNA3P22001 575 aa14.91□□□□□ -0.02
CUX1-210ENST00000497815 FAM161AQ3B820 660 aa14.91□□□□□ -0.02
CUX1-210ENST00000497815 DDX46Q7L014 1031 aaKnown RBP14.91□□□□□ -0.02
CUX1-210ENST00000497815 ANKRD44Q8N8A2 993 aa14.91□□□□□ -0.02
CUX1-210ENST00000497815 SEC31BQ9NQW1 1179 aa14.91□□□□□ -0.02
CUX1-210ENST00000497815 HDAC5Q9UQL6 1122 aa14.91□□□□□ -0.02
CUX1-210ENST00000497815 CSF1RP07333 972 aa14.9□□□□□ -0.02
CUX1-210ENST00000497815 STYK1Q6J9G0 422 aa14.9□□□□□ -0.02
CUX1-210ENST00000497815 PELP1Q8IZL8 1130 aaKnown RBP14.9□□□□□ -0.02
CUX1-210ENST00000497815 PIM2Q9P1W9 311 aa14.9□□□□□ -0.02
CUX1-210ENST00000497815 ZNF219Q9P2Y4 722 aaPredicted RBP14.9□□□□□ -0.02
CUX1-210ENST00000497815 ITGA6P23229 1130 aa14.89□□□□□ -0.03
CUX1-210ENST00000497815 HOXA10P31260 410 aaPredicted RBP14.89□□□□□ -0.03
CUX1-210ENST00000497815 EXOC6Q8TAG9 804 aa14.89□□□□□ -0.03
CUX1-210ENST00000497815 CHMP4BQ9H444 224 aaKnown RBP14.89□□□□□ -0.03
CUX1-210ENST00000497815 ZBTB40Q9NUA8 1239 aa14.89□□□□□ -0.03
CUX1-210ENST00000497815 ANKRD18BA2A2Z9 1011 aa14.88□□□□□ -0.03
CUX1-210ENST00000497815 ALDH1B1P30837 517 aa14.88□□□□□ -0.03
CUX1-210ENST00000497815 IFIT5Q13325 482 aaKnown RBP14.88□□□□□ -0.03
CUX1-210ENST00000497815 CCDC57Q2TAC2 916 aa14.88□□□□□ -0.03
CUX1-210ENST00000497815 RABL6Q3YEC7 729 aaPredicted RBP14.88□□□□□ -0.03
CUX1-210ENST00000497815 DALRD3Q5D0E6 543 aaKnown RBP14.88□□□□□ -0.03
CUX1-210ENST00000497815 PRPF40BQ6NWY9 871 aaKnown RBP14.88□□□□□ -0.03
CUX1-210ENST00000497815 TTLL6Q8N841 843 aa14.88□□□□□ -0.03
CUX1-210ENST00000497815 CELF1Q92879 486 aaKnown RBP14.88□□□□□ -0.03
CUX1-210ENST00000497815 CNKSR1Q969H4 720 aa14.88□□□□□ -0.03
CUX1-210ENST00000497815 CRAMP1Q96RY5 1269 aa14.88□□□□□ -0.03
CUX1-210ENST00000497815 BCS1LQ9Y276 419 aa14.88□□□□□ -0.03
CUX1-210ENST00000497815 COL4A1P02462 1669 aa14.87□□□□□ -0.03
CUX1-210ENST00000497815 GRAPQ13588 217 aa14.87□□□□□ -0.03
CUX1-210ENST00000497815 TAF7LQ5H9L4 462 aa14.87□□□□□ -0.03
CUX1-210ENST00000497815 SLC51AQ86UW1 340 aa14.87□□□□□ -0.03
CUX1-210ENST00000497815 GRAPLQ8TC17 118 aaPredicted RBP14.87□□□□□ -0.03
CUX1-210ENST00000497815 ZNF594Q96JF6 807 aaPredicted RBP14.87□□□□□ -0.03
CUX1-210ENST00000497815 CDC5LQ99459 802 aaKnown RBP14.87□□□□□ -0.03
CUX1-210ENST00000497815 DLEC1Q9Y238 1755 aa14.87□□□□□ -0.03
CUX1-210ENST00000497815 RTL9Q8NET4 1388 aa14.86□□□□□ -0.03
CUX1-210ENST00000497815 PPEF1O14829 653 aaPredicted RBP14.86□□□□□ -0.03
CUX1-210ENST00000497815 SRGAP3O43295 1099 aa14.86□□□□□ -0.03
CUX1-210ENST00000497815 ANKRD18AQ8IVF6 992 aa14.86□□□□□ -0.03
CUX1-210ENST00000497815 KLHDC4Q8TBB5 520 aa14.86□□□□□ -0.03
CUX1-210ENST00000497815 MYH3P11055 1940 aa14.86□□□□□ -0.03
CUX1-210ENST00000497815 PNMA6EA0A0J9YXQ4 647 aa14.85□□□□□ -0.03
CUX1-210ENST00000497815 C21orf2O43822 256 aa14.85□□□□□ -0.03
CUX1-210ENST00000497815 RPS8P62241 208 aaKnown RBP14.85□□□□□ -0.03
CUX1-210ENST00000497815 OLFM4Q6UX06 510 aa14.85□□□□□ -0.03
CUX1-210ENST00000497815 BBOX1O75936 387 aa14.84□□□□□ -0.03
CUX1-210ENST00000497815 IGHMBP2P38935 993 aaKnown RBP14.84□□□□□ -0.03
CUX1-210ENST00000497815 ATP8B2P98198 1209 aa14.84□□□□□ -0.03
CUX1-210ENST00000497815 GPR162Q16538 588 aa14.84□□□□□ -0.03
CUX1-210ENST00000497815 CEP85Q6P2H3 762 aa14.84□□□□□ -0.03
CUX1-210ENST00000497815 MPHOSPH8Q99549 860 aa14.84□□□□□ -0.03
CUX1-210ENST00000497815 TAF1P21675 1872 aa14.84□□□□□ -0.03
CUX1-210ENST00000497815 CACNA1SQ13698 1873 aa14.84□□□□□ -0.03
CUX1-210ENST00000497815 NEFLP07196 543 aa14.83□□□□□ -0.04
CUX1-210ENST00000497815 YBX3P16989 372 aaKnown RBP eCLIP14.83□□□□□ -0.04
CUX1-210ENST00000497815 MTX1Q13505 466 aa14.83□□□□□ -0.04
CUX1-210ENST00000497815 PA2G4Q9UQ80 394 aaKnown RBP14.83□□□□□ -0.04
CUX1-210ENST00000497815 SRCAPQ6ZRS2 3230 aa14.83□□□□□ -0.04
CUX1-210ENST00000497815 RFX5P48382 616 aaPredicted RBP14.82□□□□□ -0.04
CUX1-210ENST00000497815 LDHAL6AQ6ZMR3 332 aa14.82□□□□□ -0.04
CUX1-210ENST00000497815 PUS3Q9BZE2 481 aaKnown RBP14.82□□□□□ -0.04
CUX1-210ENST00000497815 SIL1Q9H173 461 aa14.82□□□□□ -0.04
CUX1-210ENST00000497815 TMX4Q9H1E5 349 aaPredicted RBP14.82□□□□□ -0.04
CUX1-210ENST00000497815 CNNM1Q9NRU3 951 aa14.82□□□□□ -0.04
CUX1-210ENST00000497815 ATP6V0A2Q9Y487 856 aa14.82□□□□□ -0.04
CUX1-210ENST00000497815 SLX4Q8IY92 1834 aa14.82□□□□□ -0.04
CUX1-210ENST00000497815 SPEF2Q9C093 1822 aa14.81□□□□□ -0.04
CUX1-210ENST00000497815 BRCA1P38398 1863 aaKnown RBP14.81□□□□□ -0.04
CUX1-210ENST00000497815 PTPN12Q05209 780 aaKnown RBP14.81□□□□□ -0.04
CUX1-210ENST00000497815 C1QBPQ07021 282 aaKnown RBP14.81□□□□□ -0.04
CUX1-210ENST00000497815 RPAP2Q8IXW5 612 aaPredicted RBP14.81□□□□□ -0.04
CUX1-210ENST00000497815 PCDHB15Q9Y5E8 787 aa14.81□□□□□ -0.04
CUX1-210ENST00000497815 POLA2Q14181 598 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms