RNA–Protein interactions for RNA: ENST00000496567.5

C9orf3-222, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-222ENST00000496567 C3orf67Q6ZVT6 689 aa27.22■■□□□ 1.95
C9orf3-222ENST00000496567 C1orf115Q9H7X2 142 aa27.22■■□□□ 1.95
C9orf3-222ENST00000496567 H0YIN7 160 aa27.21■■□□□ 1.95
C9orf3-222ENST00000496567 TGFB2P61812 414 aa27.21■■□□□ 1.95
C9orf3-222ENST00000496567 KLHL34Q8N239 644 aa27.21■■□□□ 1.95
C9orf3-222ENST00000496567 ANKRD44Q8N8A2 993 aa27.2■■□□□ 1.94
C9orf3-222ENST00000496567 RPGRQ92834 1020 aaKnown RBP27.2■■□□□ 1.94
C9orf3-222ENST00000496567 C2CD5Q86YS7 1000 aa27.19■■□□□ 1.94
C9orf3-222ENST00000496567 CHMP3Q9Y3E7 222 aa27.19■■□□□ 1.94
C9orf3-222ENST00000496567 LRP5O75197 1615 aa27.19■■□□□ 1.94
C9orf3-222ENST00000496567 SRGNP10124 158 aa27.18■■□□□ 1.94
C9orf3-222ENST00000496567 NPR1P16066 1061 aa27.18■■□□□ 1.94
C9orf3-222ENST00000496567 MTX1Q13505 466 aa27.18■■□□□ 1.94
C9orf3-222ENST00000496567 MASTLQ96GX5 879 aa27.18■■□□□ 1.94
C9orf3-222ENST00000496567 RBM17Q96I25 401 aaKnown RBP27.18■■□□□ 1.94
C9orf3-222ENST00000496567 CCDC85AQ96PX6 553 aaPredicted RBP27.18■■□□□ 1.94
C9orf3-222ENST00000496567 RTL9Q8NET4 1388 aa27.17■■□□□ 1.94
C9orf3-222ENST00000496567 DDX46Q7L014 1031 aaKnown RBP27.17■■□□□ 1.94
C9orf3-222ENST00000496567 GREM2Q9H772 168 aa27.17■■□□□ 1.94
C9orf3-222ENST00000496567 HOXA10P31260 410 aaPredicted RBP27.16■■□□□ 1.94
C9orf3-222ENST00000496567 CCDC57Q2TAC2 916 aa27.16■■□□□ 1.94
C9orf3-222ENST00000496567 RPAP2Q8IXW5 612 aaPredicted RBP27.16■■□□□ 1.94
C9orf3-222ENST00000496567 ATP8B2P98198 1209 aa27.15■■□□□ 1.94
C9orf3-222ENST00000496567 IFIT5Q13325 482 aaKnown RBP27.15■■□□□ 1.94
C9orf3-222ENST00000496567 FAM161AQ3B820 660 aa27.15■■□□□ 1.94
C9orf3-222ENST00000496567 CEP85Q6P2H3 762 aa27.15■■□□□ 1.94
C9orf3-222ENST00000496567 FHDC1Q9C0D6 1143 aaPredicted RBP27.15■■□□□ 1.94
C9orf3-222ENST00000496567 ITGA6P23229 1130 aa27.14■■□□□ 1.94
C9orf3-222ENST00000496567 CHRNA5P30532 468 aa27.14■■□□□ 1.94
C9orf3-222ENST00000496567 STYK1Q6J9G0 422 aa27.14■■□□□ 1.94
C9orf3-222ENST00000496567 ANKRD18BA2A2Z9 1011 aa27.14■■□□□ 1.93
C9orf3-222ENST00000496567 SRGAP3O43295 1099 aa27.14■■□□□ 1.93
C9orf3-222ENST00000496567 ALDH1B1P30837 517 aa27.14■■□□□ 1.93
C9orf3-222ENST00000496567 ZNF622Q969S3 477 aaKnown RBP eCLIP27.14■■□□□ 1.93
C9orf3-222ENST00000496567 CRAMP1Q96RY5 1269 aa27.14■■□□□ 1.93
C9orf3-222ENST00000496567 COL11A2P13942 1736 aaPredicted RBP27.13■■□□□ 1.93
C9orf3-222ENST00000496567 A0A0G2JLW4 131 aa27.13■■□□□ 1.93
C9orf3-222ENST00000496567 DPEP1P16444 411 aa27.13■■□□□ 1.93
C9orf3-222ENST00000496567 CDC5LQ99459 802 aaKnown RBP27.13■■□□□ 1.93
C9orf3-222ENST00000496567 SEC31BQ9NQW1 1179 aa27.12■■□□□ 1.93
C9orf3-222ENST00000496567 CNKSR1Q969H4 720 aa27.11■■□□□ 1.93
C9orf3-222ENST00000496567 PNMA6EA0A0J9YXQ4 647 aa27.1■■□□□ 1.93
C9orf3-222ENST00000496567 HMMRO75330 724 aa27.1■■□□□ 1.93
C9orf3-222ENST00000496567 GRAPQ13588 217 aa27.1■■□□□ 1.93
C9orf3-222ENST00000496567 TAF7LQ5H9L4 462 aa27.1■■□□□ 1.93
C9orf3-222ENST00000496567 GRAPLQ8TC17 118 aaPredicted RBP27.1■■□□□ 1.93
C9orf3-222ENST00000496567 KIAA1551Q9HCM1 1747 aa27.1■■□□□ 1.93
C9orf3-222ENST00000496567 DLEC1Q9Y238 1755 aa27.1■■□□□ 1.93
C9orf3-222ENST00000496567 SSH3Q8TE77 659 aa27.09■■□□□ 1.93
C9orf3-222ENST00000496567 SYT17Q9BSW7 474 aa27.09■■□□□ 1.93
C9orf3-222ENST00000496567 PCDHB15Q9Y5E8 787 aa27.09■■□□□ 1.93
C9orf3-222ENST00000496567 KCNA3P22001 575 aa27.09■■□□□ 1.93
C9orf3-222ENST00000496567 POLA2Q14181 598 aa27.09■■□□□ 1.93
C9orf3-222ENST00000496567 ANKRD18AQ8IVF6 992 aa27.09■■□□□ 1.93
C9orf3-222ENST00000496567 PIM2Q9P1W9 311 aa27.09■■□□□ 1.93
C9orf3-222ENST00000496567 BBOX1O75936 387 aa27.08■■□□□ 1.93
C9orf3-222ENST00000496567 IGHMBP2P38935 993 aaKnown RBP27.08■■□□□ 1.93
C9orf3-222ENST00000496567 RPS8P62241 208 aaKnown RBP27.08■■□□□ 1.93
C9orf3-222ENST00000496567 ERICH6BQ5W0A0 696 aa27.08■■□□□ 1.93
C9orf3-222ENST00000496567 RFX5P48382 616 aaPredicted RBP27.07■■□□□ 1.92
C9orf3-222ENST00000496567 TTLL6Q8N841 843 aa27.07■■□□□ 1.92
C9orf3-222ENST00000496567 NLGN2Q8NFZ4 835 aa27.07■■□□□ 1.92
C9orf3-222ENST00000496567 CELF1Q92879 486 aaKnown RBP27.07■■□□□ 1.92
C9orf3-222ENST00000496567 SIRT2Q8IXJ6 389 aa27.06■■□□□ 1.92
C9orf3-222ENST00000496567 MPHOSPH8Q99549 860 aa27.06■■□□□ 1.92
C9orf3-222ENST00000496567 PTPN12Q05209 780 aaKnown RBP27.05■■□□□ 1.92
C9orf3-222ENST00000496567 TMC4Q7Z404 712 aa27.05■■□□□ 1.92
C9orf3-222ENST00000496567 ZNF594Q96JF6 807 aaPredicted RBP27.05■■□□□ 1.92
C9orf3-222ENST00000496567 COPRSQ9NQ92 184 aa27.05■■□□□ 1.92
C9orf3-222ENST00000496567 TAF1P21675 1872 aa27.04■■□□□ 1.92
C9orf3-222ENST00000496567 PRPF40BQ6NWY9 871 aaKnown RBP27.04■■□□□ 1.92
C9orf3-222ENST00000496567 FBXO3Q9UK99 471 aa27.04■■□□□ 1.92
C9orf3-222ENST00000496567 LDHAL6AQ6ZMR3 332 aa27.03■■□□□ 1.92
C9orf3-222ENST00000496567 KLHDC4Q8TBB5 520 aa27.03■■□□□ 1.92
C9orf3-222ENST00000496567 BSDC1Q9NW68 430 aaPredicted RBP27.03■■□□□ 1.92
C9orf3-222ENST00000496567 PPEF1O14829 653 aaPredicted RBP27.02■■□□□ 1.92
C9orf3-222ENST00000496567 DALRD3Q5D0E6 543 aaKnown RBP27.02■■□□□ 1.92
C9orf3-222ENST00000496567 GTF3C3Q9Y5Q9 886 aa27.02■■□□□ 1.92
C9orf3-222ENST00000496567 CNNM1Q9NRU3 951 aa27.01■■□□□ 1.92
C9orf3-222ENST00000496567 PA2G4Q9UQ80 394 aaKnown RBP27.01■■□□□ 1.92
C9orf3-222ENST00000496567 BRCA1P38398 1863 aaKnown RBP27.01■■□□□ 1.91
C9orf3-222ENST00000496567 HDAC1Q13547 482 aaPredicted RBP27.01■■□□□ 1.91
C9orf3-222ENST00000496567 TMX4Q9H1E5 349 aaPredicted RBP27.01■■□□□ 1.91
C9orf3-222ENST00000496567 RWDD1Q9H446 243 aaPredicted RBP27.01■■□□□ 1.91
C9orf3-222ENST00000496567 COL4A1P02462 1669 aa27■■□□□ 1.91
C9orf3-222ENST00000496567 CACNA1SQ13698 1873 aa27■■□□□ 1.91
C9orf3-222ENST00000496567 EYA2O00167 538 aa26.99■■□□□ 1.91
C9orf3-222ENST00000496567 SURF6O75683 361 aaKnown RBP26.99■■□□□ 1.91
C9orf3-222ENST00000496567 CIAO1O76071 339 aa26.99■■□□□ 1.91
C9orf3-222ENST00000496567 G3BP1Q13283 466 aaKnown RBP eCLIP26.99■■□□□ 1.91
C9orf3-222ENST00000496567 SP8Q8IXZ3 490 aa26.99■■□□□ 1.91
C9orf3-222ENST00000496567 SIL1Q9H173 461 aa26.99■■□□□ 1.91
C9orf3-222ENST00000496567 NOP58Q9Y2X3 529 aaKnown RBP26.99■■□□□ 1.91
C9orf3-222ENST00000496567 ATP6V0A2Q9Y487 856 aa26.99■■□□□ 1.91
C9orf3-222ENST00000496567 SLX4Q8IY92 1834 aa26.99■■□□□ 1.91
C9orf3-222ENST00000496567 SPEF2Q9C093 1822 aa26.98■■□□□ 1.91
C9orf3-222ENST00000496567 HSP90AB4PQ58FF6 505 aa26.98■■□□□ 1.91
C9orf3-222ENST00000496567 PUS3Q9BZE2 481 aaKnown RBP26.97■■□□□ 1.91
C9orf3-222ENST00000496567 IL15P40933 162 aaPredicted RBP26.97■■□□□ 1.91
C9orf3-222ENST00000496567 LRRC24Q50LG9 513 aa26.97■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms