RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 WDR17Q8IZU2 1322 aa13.39□□□□□ -0.27
CHMP3-209ENST00000494623 VPS37CA5D8V6 355 aaPredicted RBP13.39□□□□□ -0.27
CHMP3-209ENST00000494623 H7C1W4 665 aa13.39□□□□□ -0.27
CHMP3-209ENST00000494623 FIBPO43427 364 aa13.39□□□□□ -0.27
CHMP3-209ENST00000494623 TAF5LO75529 589 aa13.39□□□□□ -0.27
CHMP3-209ENST00000494623 FOXO4P98177 505 aa13.39□□□□□ -0.27
CHMP3-209ENST00000494623 PCDH11XQ9BZA7 1347 aa13.39□□□□□ -0.27
CHMP3-209ENST00000494623 PCDH11YQ9BZA8 1340 aa13.39□□□□□ -0.27
CHMP3-209ENST00000494623 MRC1P22897 1456 aa13.39□□□□□ -0.27
CHMP3-209ENST00000494623 CCDC129Q6ZRS4 1044 aa13.39□□□□□ -0.27
CHMP3-209ENST00000494623 DDX46Q7L014 1031 aaKnown RBP13.39□□□□□ -0.27
CHMP3-209ENST00000494623 SEC62Q99442 399 aaKnown RBP13.39□□□□□ -0.27
CHMP3-209ENST00000494623 CWC25Q9NXE8 425 aaPredicted RBP13.39□□□□□ -0.27
CHMP3-209ENST00000494623 MTMR6Q9Y217 621 aa13.39□□□□□ -0.27
CHMP3-209ENST00000494623 ATP6V1DQ9Y5K8 247 aa13.39□□□□□ -0.27
CHMP3-209ENST00000494623 NAP1L5Q96NT1 182 aaPredicted RBP13.38□□□□□ -0.27
CHMP3-209ENST00000494623 TSPY26PQ9H489 355 aa13.38□□□□□ -0.27
CHMP3-209ENST00000494623 MED23Q9ULK4 1368 aa13.38□□□□□ -0.27
CHMP3-209ENST00000494623 ERVV-2B6SEH9 535 aa13.38□□□□□ -0.27
CHMP3-209ENST00000494623 RPS6KB1P23443 525 aa13.38□□□□□ -0.27
CHMP3-209ENST00000494623 TIMM10P62072 90 aa13.38□□□□□ -0.27
CHMP3-209ENST00000494623 DNM1Q05193 864 aaKnown RBP13.38□□□□□ -0.27
CHMP3-209ENST00000494623 EVA1CP58658 441 aa13.37□□□□□ -0.27
CHMP3-209ENST00000494623 STK3Q13188 491 aa13.37□□□□□ -0.27
CHMP3-209ENST00000494623 LARP1BQ659C4 914 aaKnown RBP13.37□□□□□ -0.27
CHMP3-209ENST00000494623 TMEM87AQ8NBN3 555 aa13.37□□□□□ -0.27
CHMP3-209ENST00000494623 ZNF330Q9Y3S2 320 aaPredicted RBP13.37□□□□□ -0.27
CHMP3-209ENST00000494623 IL2RBP14784 551 aa13.37□□□□□ -0.27
CHMP3-209ENST00000494623 ZNF594Q96JF6 807 aaPredicted RBP13.37□□□□□ -0.27
CHMP3-209ENST00000494623 HAUS7Q99871 368 aa13.37□□□□□ -0.27
CHMP3-209ENST00000494623 TCHHQ07283 1943 aa13.36□□□□□ -0.27
CHMP3-209ENST00000494623 ANKRD1Q15327 319 aa13.36□□□□□ -0.27
CHMP3-209ENST00000494623 SLAIN2Q9P270 581 aa13.36□□□□□ -0.27
CHMP3-209ENST00000494623 ABCC6O95255 1503 aa13.36□□□□□ -0.27
CHMP3-209ENST00000494623 PHF14O94880 888 aa13.36□□□□□ -0.27
CHMP3-209ENST00000494623 UBE2HP62256 183 aa13.36□□□□□ -0.27
CHMP3-209ENST00000494623 MCMDC2Q4G0Z9 681 aa13.36□□□□□ -0.27
CHMP3-209ENST00000494623 ATG9AQ7Z3C6 839 aa13.36□□□□□ -0.27
CHMP3-209ENST00000494623 ZSCAN30Q86W11 494 aa13.36□□□□□ -0.27
CHMP3-209ENST00000494623 HMG20BQ9P0W2 317 aa13.36□□□□□ -0.27
CHMP3-209ENST00000494623 COL15A1P39059 1388 aa13.35□□□□□ -0.27
CHMP3-209ENST00000494623 PLEKHG2Q9H7P9 1386 aa13.35□□□□□ -0.27
CHMP3-209ENST00000494623 TOB2Q14106 344 aaPredicted RBP13.35□□□□□ -0.27
CHMP3-209ENST00000494623 SLFNL1Q499Z3 407 aa13.35□□□□□ -0.27
CHMP3-209ENST00000494623 AFDNP55196 1824 aaKnown RBP13.35□□□□□ -0.27
CHMP3-209ENST00000494623 PKD1L3Q7Z443 1732 aa13.35□□□□□ -0.27
CHMP3-209ENST00000494623 GOLIM4O00461 696 aa13.35□□□□□ -0.27
CHMP3-209ENST00000494623 LRRC24Q50LG9 513 aa13.35□□□□□ -0.27
CHMP3-209ENST00000494623 FERMT3Q86UX7 667 aa13.35□□□□□ -0.27
CHMP3-209ENST00000494623 PDLIM2Q96JY6 352 aa13.35□□□□□ -0.27
CHMP3-209ENST00000494623 MSNP26038 577 aaKnown RBP13.34□□□□□ -0.27
CHMP3-209ENST00000494623 TSGA10IPQ3SY00 556 aa13.34□□□□□ -0.27
CHMP3-209ENST00000494623 CCDC183Q5T5S1 534 aa13.34□□□□□ -0.27
CHMP3-209ENST00000494623 NEK1Q96PY6 1258 aa13.34□□□□□ -0.27
CHMP3-209ENST00000494623 CARD10Q9BWT7 1032 aa13.34□□□□□ -0.27
CHMP3-209ENST00000494623 NKX1-1Q15270 411 aaPredicted RBP13.34□□□□□ -0.27
CHMP3-209ENST00000494623 USPL1Q5W0Q7 1092 aa13.34□□□□□ -0.27
CHMP3-209ENST00000494623 CCDC191Q8NCU4 936 aa13.34□□□□□ -0.27
CHMP3-209ENST00000494623 ARFGEF2Q9Y6D5 1785 aa13.34□□□□□ -0.27
CHMP3-209ENST00000494623 KBTBD3Q8NAB2 608 aa13.33□□□□□ -0.27
CHMP3-209ENST00000494623 U3KPZ7 1027 aaPredicted RBP13.33□□□□□ -0.27
CHMP3-209ENST00000494623 ZNF609O15014 1411 aa13.33□□□□□ -0.27
CHMP3-209ENST00000494623 CYP21A2P08686 494 aa13.33□□□□□ -0.28
CHMP3-209ENST00000494623 IL15P40933 162 aaPredicted RBP13.33□□□□□ -0.28
CHMP3-209ENST00000494623 KRT32Q14532 448 aa13.33□□□□□ -0.28
CHMP3-209ENST00000494623 CSPP1Q1MSJ5 1256 aa13.33□□□□□ -0.28
CHMP3-209ENST00000494623 FAM173BQ6P4H8 233 aa13.33□□□□□ -0.28
CHMP3-209ENST00000494623 PUS3Q9BZE2 481 aaKnown RBP13.33□□□□□ -0.28
CHMP3-209ENST00000494623 ALDH8A1Q9H2A2 487 aaPredicted RBP13.33□□□□□ -0.28
CHMP3-209ENST00000494623 PAG1Q9NWQ8 432 aa13.33□□□□□ -0.28
CHMP3-209ENST00000494623 SOS2Q07890 1332 aaPredicted RBP13.33□□□□□ -0.28
CHMP3-209ENST00000494623 EYA2O00167 538 aa13.33□□□□□ -0.28
CHMP3-209ENST00000494623 Q6ZUG5 572 aa13.33□□□□□ -0.28
CHMP3-209ENST00000494623 CDC37L1Q7L3B6 337 aa13.33□□□□□ -0.28
CHMP3-209ENST00000494623 CCDC85AQ96PX6 553 aaPredicted RBP13.33□□□□□ -0.28
CHMP3-209ENST00000494623 LRRC2Q9BYS8 371 aa13.32□□□□□ -0.28
CHMP3-209ENST00000494623 JCADQ9P266 1359 aa13.32□□□□□ -0.28
CHMP3-209ENST00000494623 HSP90B1P14625 803 aaKnown RBP13.32□□□□□ -0.28
CHMP3-209ENST00000494623 PDCP20941 246 aa13.32□□□□□ -0.28
CHMP3-209ENST00000494623 TMOD3Q9NYL9 352 aa13.32□□□□□ -0.28
CHMP3-209ENST00000494623 COL5A2P05997 1499 aaPredicted RBP13.31□□□□□ -0.28
CHMP3-209ENST00000494623 FGD1P98174 961 aa13.31□□□□□ -0.28
CHMP3-209ENST00000494623 HS1BP3Q53T59 392 aa13.31□□□□□ -0.28
CHMP3-209ENST00000494623 A0A1B0GUL7 405 aa13.31□□□□□ -0.28
CHMP3-209ENST00000494623 LETM1O95202 739 aaPredicted RBP13.31□□□□□ -0.28
CHMP3-209ENST00000494623 IFIT1P09914 478 aaKnown RBP13.31□□□□□ -0.28
CHMP3-209ENST00000494623 GIMAP6Q6P9H5 292 aa13.31□□□□□ -0.28
CHMP3-209ENST00000494623 GLI3P10071 1580 aa13.3□□□□□ -0.28
CHMP3-209ENST00000494623 JAK2O60674 1132 aa13.3□□□□□ -0.28
CHMP3-209ENST00000494623 CCDC57Q2TAC2 916 aa13.3□□□□□ -0.28
CHMP3-209ENST00000494623 GPR108Q9NPR9 543 aa13.3□□□□□ -0.28
CHMP3-209ENST00000494623 ASAP1Q9ULH1 1129 aa13.3□□□□□ -0.28
CHMP3-209ENST00000494623 NOL7Q9UMY1 257 aaKnown RBP13.3□□□□□ -0.28
CHMP3-209ENST00000494623 ZNF335Q9H4Z2 1342 aaPredicted RBP13.3□□□□□ -0.28
CHMP3-209ENST00000494623 KRT85P78386 507 aa13.3□□□□□ -0.28
CHMP3-209ENST00000494623 TCIRG1Q13488 830 aa13.3□□□□□ -0.28
CHMP3-209ENST00000494623 POTEDQ86YR6 584 aa13.3□□□□□ -0.28
CHMP3-209ENST00000494623 PKNOX2Q96KN3 472 aa13.3□□□□□ -0.28
CHMP3-209ENST00000494623 CEP126Q9P2H0 1117 aa13.3□□□□□ -0.28
CHMP3-209ENST00000494623 TFIP11Q9UBB9 837 aaKnown RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms