RNA–Protein interactions for RNA: ENST00000494559.5

PDZRN3-211, Transcript of PDZ domain containing ring finger 3, humanhuman

TSL 5

Gene PDZRN3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3-211ENST00000494559 CSF1RP07333 972 aa18.65■□□□□ 0.58
PDZRN3-211ENST00000494559 CASTP20810 708 aaKnown RBP18.65■□□□□ 0.58
PDZRN3-211ENST00000494559 AK2P54819 239 aa18.65■□□□□ 0.58
PDZRN3-211ENST00000494559 CREB3L3Q68CJ9 461 aa18.65■□□□□ 0.58
PDZRN3-211ENST00000494559 RUFY3Q7L099 469 aa18.65■□□□□ 0.58
PDZRN3-211ENST00000494559 ZNF589Q86UQ0 364 aaPredicted RBP18.65■□□□□ 0.58
PDZRN3-211ENST00000494559 PUS3Q9BZE2 481 aaKnown RBP18.65■□□□□ 0.58
PDZRN3-211ENST00000494559 ZSWIM6Q9HCJ5 1215 aa18.65■□□□□ 0.58
PDZRN3-211ENST00000494559 NDUFB9Q9Y6M9 179 aa18.65■□□□□ 0.58
PDZRN3-211ENST00000494559 NWD2Q9ULI1 1742 aa18.65■□□□□ 0.58
PDZRN3-211ENST00000494559 CDHR2Q9BYE9 1310 aa18.64■□□□□ 0.57
PDZRN3-211ENST00000494559 TIMM10P62072 90 aa18.64■□□□□ 0.57
PDZRN3-211ENST00000494559 DDB1Q16531 1140 aa18.64■□□□□ 0.57
PDZRN3-211ENST00000494559 NLRP10Q86W26 655 aa18.64■□□□□ 0.57
PDZRN3-211ENST00000494559 FBXO3Q9UK99 471 aa18.64■□□□□ 0.57
PDZRN3-211ENST00000494559 FSD2A1L4K1 749 aa18.64■□□□□ 0.57
PDZRN3-211ENST00000494559 HSP90AB3PQ58FF7 597 aa18.64■□□□□ 0.57
PDZRN3-211ENST00000494559 DNAJC2Q99543 621 aaKnown RBP18.64■□□□□ 0.57
PDZRN3-211ENST00000494559 SPATA31A5Q5VU36 1347 aa18.63■□□□□ 0.57
PDZRN3-211ENST00000494559 SPATA31A7Q8IWB4 1347 aa18.63■□□□□ 0.57
PDZRN3-211ENST00000494559 SLC27A2O14975 620 aa18.63■□□□□ 0.57
PDZRN3-211ENST00000494559 BRD1O95696 1058 aa18.63■□□□□ 0.57
PDZRN3-211ENST00000494559 CPA1P15085 419 aa18.63■□□□□ 0.57
PDZRN3-211ENST00000494559 CCDC57Q2TAC2 916 aa18.63■□□□□ 0.57
PDZRN3-211ENST00000494559 JAKMIP1Q96N16 626 aaKnown RBP18.63■□□□□ 0.57
PDZRN3-211ENST00000494559 NEUROD6Q96NK8 337 aa18.63■□□□□ 0.57
PDZRN3-211ENST00000494559 ARXQ96QS3 562 aa18.63■□□□□ 0.57
PDZRN3-211ENST00000494559 LIMCH1Q9UPQ0 1083 aa18.63■□□□□ 0.57
PDZRN3-211ENST00000494559 RPAP1Q9BWH6 1393 aaPredicted RBP18.63■□□□□ 0.57
PDZRN3-211ENST00000494559 TAF5LO75529 589 aa18.62■□□□□ 0.57
PDZRN3-211ENST00000494559 ZKSCAN1P17029 563 aaPredicted RBP18.62■□□□□ 0.57
PDZRN3-211ENST00000494559 IL6STP40189 918 aaPredicted RBP18.62■□□□□ 0.57
PDZRN3-211ENST00000494559 VPS53Q5VIR6 699 aa18.62■□□□□ 0.57
PDZRN3-211ENST00000494559 SLIT2O94813 1529 aa18.62■□□□□ 0.57
PDZRN3-211ENST00000494559 ERVV-1B6SEH8 477 aa18.62■□□□□ 0.57
PDZRN3-211ENST00000494559 MCTP1Q6DN14 999 aa18.62■□□□□ 0.57
PDZRN3-211ENST00000494559 SYNE4Q8N205 404 aa18.62■□□□□ 0.57
PDZRN3-211ENST00000494559 MARCH10Q8NA82 808 aaPredicted RBP18.62■□□□□ 0.57
PDZRN3-211ENST00000494559 KBTBD3Q8NAB2 608 aa18.62■□□□□ 0.57
PDZRN3-211ENST00000494559 MYH3P11055 1940 aa18.62■□□□□ 0.57
PDZRN3-211ENST00000494559 PALLDQ8WX93 1383 aa18.61■□□□□ 0.57
PDZRN3-211ENST00000494559 A0A1B0GUL7 405 aa18.61■□□□□ 0.57
PDZRN3-211ENST00000494559 GPTP24298 496 aa18.61■□□□□ 0.57
PDZRN3-211ENST00000494559 CYP46A1Q9Y6A2 500 aa18.61■□□□□ 0.57
PDZRN3-211ENST00000494559 KCNJ4P48050 445 aa18.61■□□□□ 0.57
PDZRN3-211ENST00000494559 USPL1Q5W0Q7 1092 aa18.61■□□□□ 0.57
PDZRN3-211ENST00000494559 DDX46Q7L014 1031 aaKnown RBP18.61■□□□□ 0.57
PDZRN3-211ENST00000494559 PDRG1Q9NUG6 133 aa18.61■□□□□ 0.57
PDZRN3-211ENST00000494559 LMBRD1Q9NUN5 540 aa18.61■□□□□ 0.57
PDZRN3-211ENST00000494559 CEP126Q9P2H0 1117 aa18.61■□□□□ 0.57
PDZRN3-211ENST00000494559 SPEF2Q9C093 1822 aa18.6■□□□□ 0.57
PDZRN3-211ENST00000494559 CHGBP05060 677 aa18.6■□□□□ 0.57
PDZRN3-211ENST00000494559 TSGA10IPQ3SY00 556 aa18.6■□□□□ 0.57
PDZRN3-211ENST00000494559 BARGINQ6ZT62 677 aa18.6■□□□□ 0.57
PDZRN3-211ENST00000494559 TICAM2Q86XR7 235 aa18.6■□□□□ 0.57
PDZRN3-211ENST00000494559 CICQ96RK0 1608 aaPredicted RBP18.6■□□□□ 0.57
PDZRN3-211ENST00000494559 NUTM2BA6NNL0 878 aaPredicted RBP18.59■□□□□ 0.57
PDZRN3-211ENST00000494559 NUTM2EB1AL46 878 aaPredicted RBP18.59■□□□□ 0.57
PDZRN3-211ENST00000494559 KLHL40Q2TBA0 621 aa18.59■□□□□ 0.57
PDZRN3-211ENST00000494559 L1TD1Q5T7N2 865 aaKnown RBP18.59■□□□□ 0.57
PDZRN3-211ENST00000494559 NUTM2AQ8IVF1 878 aaPredicted RBP18.59■□□□□ 0.57
PDZRN3-211ENST00000494559 PAG1Q9NWQ8 432 aa18.59■□□□□ 0.57
PDZRN3-211ENST00000494559 CCDC9Q9Y3X0 531 aaKnown RBP18.59■□□□□ 0.57
PDZRN3-211ENST00000494559 RREB1Q92766 1687 aa18.59■□□□□ 0.57
PDZRN3-211ENST00000494559 IFIT5Q13325 482 aaKnown RBP18.59■□□□□ 0.57
PDZRN3-211ENST00000494559 RNF20Q5VTR2 975 aa18.59■□□□□ 0.57
PDZRN3-211ENST00000494559 DZIP3Q86Y13 1208 aaKnown RBP18.59■□□□□ 0.57
PDZRN3-211ENST00000494559 TTLL11Q8NHH1 800 aa18.59■□□□□ 0.57
PDZRN3-211ENST00000494559 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.59■□□□□ 0.57
PDZRN3-211ENST00000494559 LARP6Q9BRS8 491 aaKnown RBP18.59■□□□□ 0.57
PDZRN3-211ENST00000494559 SH3TC1Q8TE82 1336 aa18.58■□□□□ 0.57
PDZRN3-211ENST00000494559 GOLGA6L3A6NEY3 463 aa18.58■□□□□ 0.57
PDZRN3-211ENST00000494559 EIF5P55010 431 aaKnown RBP18.58■□□□□ 0.57
PDZRN3-211ENST00000494559 MCMDC2Q4G0Z9 681 aa18.58■□□□□ 0.57
PDZRN3-211ENST00000494559 INTS5Q6P9B9 1019 aaKnown RBP18.58■□□□□ 0.57
PDZRN3-211ENST00000494559 CCDC85AQ96PX6 553 aaPredicted RBP18.58■□□□□ 0.57
PDZRN3-211ENST00000494559 HMG20BQ9P0W2 317 aa18.58■□□□□ 0.57
PDZRN3-211ENST00000494559 TBC1D2BQ9UPU7 963 aa18.58■□□□□ 0.57
PDZRN3-211ENST00000494559 TAF6LQ9Y6J9 622 aa18.58■□□□□ 0.57
PDZRN3-211ENST00000494559 GOLIM4O00461 696 aa18.58■□□□□ 0.56
PDZRN3-211ENST00000494559 LARGE1O95461 756 aa18.58■□□□□ 0.56
PDZRN3-211ENST00000494559 PSMA5P28066 241 aa18.58■□□□□ 0.56
PDZRN3-211ENST00000494559 COL9A3Q14050 684 aaPredicted RBP18.58■□□□□ 0.56
PDZRN3-211ENST00000494559 ZNF34Q8IZ26 560 aa18.58■□□□□ 0.56
PDZRN3-211ENST00000494559 ACSBG1Q96GR2 724 aa18.58■□□□□ 0.56
PDZRN3-211ENST00000494559 SEC62Q99442 399 aaKnown RBP18.58■□□□□ 0.56
PDZRN3-211ENST00000494559 TOM1O60784 492 aa18.57■□□□□ 0.56
PDZRN3-211ENST00000494559 IFIT1P09914 478 aaKnown RBP18.57■□□□□ 0.56
PDZRN3-211ENST00000494559 ZSCAN31Q96LW9 406 aaPredicted RBP18.57■□□□□ 0.56
PDZRN3-211ENST00000494559 AKAP2Q9Y2D5 859 aa18.57■□□□□ 0.56
PDZRN3-211ENST00000494559 UBN2Q6ZU65 1347 aa18.57■□□□□ 0.56
PDZRN3-211ENST00000494559 CTSWP56202 376 aa18.56■□□□□ 0.56
PDZRN3-211ENST00000494559 CCDC129Q6ZRS4 1044 aa18.56■□□□□ 0.56
PDZRN3-211ENST00000494559 GREM2Q9H772 168 aa18.56■□□□□ 0.56
PDZRN3-211ENST00000494559 RIPOR2Q9Y4F9 1068 aa18.56■□□□□ 0.56
PDZRN3-211ENST00000494559 DDX49Q9Y6V7 483 aaKnown RBP18.56■□□□□ 0.56
PDZRN3-211ENST00000494559 RIC1Q4ADV7 1423 aa18.56■□□□□ 0.56
PDZRN3-211ENST00000494559 IRS4O14654 1257 aaPredicted RBP18.56■□□□□ 0.56
PDZRN3-211ENST00000494559 PIP4K2BP78356 416 aa18.56■□□□□ 0.56
PDZRN3-211ENST00000494559 FOXD4L5Q5VV16 416 aaPredicted RBP18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms