RNA–Protein interactions for RNA: ENST00000493732.5

NPHP3-209, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,933 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-209ENST00000493732 A0A0D9SFI3 127 aa11.5□□□□□ -0.57
NPHP3-209ENST00000493732 ATP5J2-PTCD1G3V325 749 aa11.5□□□□□ -0.57
NPHP3-209ENST00000493732 PTCD1O75127 700 aaKnown RBP11.5□□□□□ -0.57
NPHP3-209ENST00000493732 TAF5LO75529 589 aa11.5□□□□□ -0.57
NPHP3-209ENST00000493732 RPS6KB1P23443 525 aa11.5□□□□□ -0.57
NPHP3-209ENST00000493732 GJB2P29033 226 aa11.5□□□□□ -0.57
NPHP3-209ENST00000493732 ADCK5Q3MIX3 580 aa11.5□□□□□ -0.57
NPHP3-209ENST00000493732 MCMDC2Q4G0Z9 681 aa11.5□□□□□ -0.57
NPHP3-209ENST00000493732 USP48Q86UV5 1035 aa11.5□□□□□ -0.57
NPHP3-209ENST00000493732 VSIG10Q8N0Z9 540 aa11.5□□□□□ -0.57
NPHP3-209ENST00000493732 KLHDC4Q8TBB5 520 aa11.5□□□□□ -0.57
NPHP3-209ENST00000493732 GLI3P10071 1580 aa11.5□□□□□ -0.57
NPHP3-209ENST00000493732 NBPF26B4DH59 902 aa11.5□□□□□ -0.57
NPHP3-209ENST00000493732 EVA1CP58658 441 aa11.5□□□□□ -0.57
NPHP3-209ENST00000493732 FOXO4P98177 505 aa11.5□□□□□ -0.57
NPHP3-209ENST00000493732 NBPF14Q5TI25 921 aa11.5□□□□□ -0.57
NPHP3-209ENST00000493732 NBPF10Q6P3W6 841 aaKnown RBP11.5□□□□□ -0.57
NPHP3-209ENST00000493732 CCDC83Q8IWF9 413 aa11.5□□□□□ -0.57
NPHP3-209ENST00000493732 NBPF15Q8N660 670 aa11.5□□□□□ -0.57
NPHP3-209ENST00000493732 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.5□□□□□ -0.57
NPHP3-209ENST00000493732 TSPY26PQ9H489 355 aa11.5□□□□□ -0.57
NPHP3-209ENST00000493732 HELLSQ9NRZ9 838 aa11.5□□□□□ -0.57
NPHP3-209ENST00000493732 TNS2Q63HR2 1409 aa11.5□□□□□ -0.57
NPHP3-209ENST00000493732 SYCE3A1L190 88 aa11.49□□□□□ -0.57
NPHP3-209ENST00000493732 ADRA2BP18089 450 aa11.49□□□□□ -0.57
NPHP3-209ENST00000493732 TRIM28Q13263 835 aaKnown RBP11.49□□□□□ -0.57
NPHP3-209ENST00000493732 CCDC183Q5T5S1 534 aa11.49□□□□□ -0.57
NPHP3-209ENST00000493732 KBTBD3Q8NAB2 608 aa11.49□□□□□ -0.57
NPHP3-209ENST00000493732 RBSNQ9H1K0 784 aa11.49□□□□□ -0.57
NPHP3-209ENST00000493732 SH3TC1Q8TE82 1336 aa11.49□□□□□ -0.57
NPHP3-209ENST00000493732 PALLDQ8WX93 1383 aa11.49□□□□□ -0.57
NPHP3-209ENST00000493732 PAPPAQ13219 1627 aa11.49□□□□□ -0.57
NPHP3-209ENST00000493732 UVSSAQ2YD98 709 aa11.48□□□□□ -0.57
NPHP3-209ENST00000493732 KCPQ6ZWJ8 1503 aa11.48□□□□□ -0.57
NPHP3-209ENST00000493732 XIRP1Q702N8 1843 aaKnown RBP11.48□□□□□ -0.57
NPHP3-209ENST00000493732 ZSCAN30Q86W11 494 aa11.48□□□□□ -0.57
NPHP3-209ENST00000493732 PDLIM2Q96JY6 352 aa11.48□□□□□ -0.57
NPHP3-209ENST00000493732 RBM27Q9P2N5 1060 aaKnown RBP11.48□□□□□ -0.57
NPHP3-209ENST00000493732 AKAP2Q9Y2D5 859 aa11.48□□□□□ -0.57
NPHP3-209ENST00000493732 CHMP3Q9Y3E7 222 aa11.48□□□□□ -0.57
NPHP3-209ENST00000493732 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.48□□□□□ -0.57
NPHP3-209ENST00000493732 EYA2O00167 538 aa11.48□□□□□ -0.57
NPHP3-209ENST00000493732 ME3Q16798 604 aa11.48□□□□□ -0.57
NPHP3-209ENST00000493732 LARP1BQ659C4 914 aaKnown RBP11.48□□□□□ -0.57
NPHP3-209ENST00000493732 NEK1Q96PY6 1258 aa11.48□□□□□ -0.57
NPHP3-209ENST00000493732 DBNDD2Q9BQY9 259 aa11.48□□□□□ -0.57
NPHP3-209ENST00000493732 TMOD3Q9NYL9 352 aa11.48□□□□□ -0.57
NPHP3-209ENST00000493732 MTMR6Q9Y217 621 aa11.48□□□□□ -0.57
NPHP3-209ENST00000493732 CPA1P15085 419 aa11.47□□□□□ -0.57
NPHP3-209ENST00000493732 MSNP26038 577 aaKnown RBP11.47□□□□□ -0.57
NPHP3-209ENST00000493732 MCM5P33992 734 aa11.47□□□□□ -0.57
NPHP3-209ENST00000493732 PIP4K2AP48426 406 aaPredicted RBP11.47□□□□□ -0.57
NPHP3-209ENST00000493732 DNAJC2Q99543 621 aaKnown RBP11.47□□□□□ -0.57
NPHP3-209ENST00000493732 TPCN1Q9ULQ1 816 aa11.47□□□□□ -0.57
NPHP3-209ENST00000493732 KIF3AQ9Y496 699 aa11.47□□□□□ -0.57
NPHP3-209ENST00000493732 SPEF2Q9C093 1822 aa11.47□□□□□ -0.57
NPHP3-209ENST00000493732 NUP188Q5SRE5 1749 aa11.47□□□□□ -0.57
NPHP3-209ENST00000493732 LARGE1O95461 756 aa11.47□□□□□ -0.57
NPHP3-209ENST00000493732 STARD3NLO95772 234 aa11.47□□□□□ -0.57
NPHP3-209ENST00000493732 HSPA2P54652 639 aa11.47□□□□□ -0.57
NPHP3-209ENST00000493732 KRT85P78386 507 aa11.47□□□□□ -0.57
NPHP3-209ENST00000493732 TCIRG1Q13488 830 aa11.47□□□□□ -0.57
NPHP3-209ENST00000493732 KIF6Q6ZMV9 814 aa11.47□□□□□ -0.57
NPHP3-209ENST00000493732 TTLL7Q6ZT98 887 aa11.47□□□□□ -0.57
NPHP3-209ENST00000493732 ATG9AQ7Z3C6 839 aa11.47□□□□□ -0.57
NPHP3-209ENST00000493732 DDX54Q8TDD1 881 aaKnown RBP11.47□□□□□ -0.57
NPHP3-209ENST00000493732 ISCA1Q9BUE6 129 aa11.47□□□□□ -0.57
NPHP3-209ENST00000493732 DSCC1Q9BVC3 393 aa11.47□□□□□ -0.57
NPHP3-209ENST00000493732 PAG1Q9NWQ8 432 aa11.47□□□□□ -0.57
NPHP3-209ENST00000493732 CEP126Q9P2H0 1117 aa11.47□□□□□ -0.57
NPHP3-209ENST00000493732 ELP1O95163 1332 aa11.46□□□□□ -0.57
NPHP3-209ENST00000493732 A1BGP04217 495 aa11.46□□□□□ -0.58
NPHP3-209ENST00000493732 CCDC57Q2TAC2 916 aa11.46□□□□□ -0.58
NPHP3-209ENST00000493732 HSP90AB3PQ58FF7 597 aa11.46□□□□□ -0.58
NPHP3-209ENST00000493732 ZNF589Q86UQ0 364 aaPredicted RBP11.46□□□□□ -0.58
NPHP3-209ENST00000493732 NEUROD6Q96NK8 337 aa11.46□□□□□ -0.58
NPHP3-209ENST00000493732 PLA2G12BQ9BX93 195 aa11.46□□□□□ -0.58
NPHP3-209ENST00000493732 SCAND2PQ9GZW5 306 aaPredicted RBP11.46□□□□□ -0.58
NPHP3-209ENST00000493732 NSFL1CQ9UNZ2 370 aaKnown RBP11.46□□□□□ -0.58
NPHP3-209ENST00000493732 CNPY2Q9Y2B0 182 aa11.46□□□□□ -0.58
NPHP3-209ENST00000493732 ABCC12Q96J65 1359 aa11.45□□□□□ -0.58
NPHP3-209ENST00000493732 PCCAP05165 728 aaPredicted RBP11.45□□□□□ -0.58
NPHP3-209ENST00000493732 ZFYP08048 801 aaPredicted RBP11.45□□□□□ -0.58
NPHP3-209ENST00000493732 CCDC158Q5M9N0 1113 aa11.45□□□□□ -0.58
NPHP3-209ENST00000493732 JARID2Q92833 1246 aaPredicted RBP11.45□□□□□ -0.58
NPHP3-209ENST00000493732 LLPHQ9BRT6 129 aaKnown RBP11.45□□□□□ -0.58
NPHP3-209ENST00000493732 CCDC39Q9UFE4 941 aa11.45□□□□□ -0.58
NPHP3-209ENST00000493732 VPS37CA5D8V6 355 aaPredicted RBP11.45□□□□□ -0.58
NPHP3-209ENST00000493732 ZBTB3Q9H5J0 574 aa11.45□□□□□ -0.58
NPHP3-209ENST00000493732 ABCA3Q99758 1704 aa11.44□□□□□ -0.58
NPHP3-209ENST00000493732 GADD45BO75293 160 aaPredicted RBP11.44□□□□□ -0.58
NPHP3-209ENST00000493732 IFIT1P09914 478 aaKnown RBP11.44□□□□□ -0.58
NPHP3-209ENST00000493732 TOB2Q14106 344 aaPredicted RBP11.44□□□□□ -0.58
NPHP3-209ENST00000493732 ZMYM1Q5SVZ6 1142 aa11.44□□□□□ -0.58
NPHP3-209ENST00000493732 CHAMP1Q96JM3 812 aa11.44□□□□□ -0.58
NPHP3-209ENST00000493732 LARP6Q9BRS8 491 aaKnown RBP11.44□□□□□ -0.58
NPHP3-209ENST00000493732 DNAJC5Q9H3Z4 198 aa11.44□□□□□ -0.58
NPHP3-209ENST00000493732 GDPD2Q9HCC8 539 aa11.44□□□□□ -0.58
NPHP3-209ENST00000493732 STRN4Q9NRL3 753 aa11.44□□□□□ -0.58
NPHP3-209ENST00000493732 CTNNA3Q9UI47 895 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms