RNA–Protein interactions for RNA: ENST00000493553.1

PRPF3-206, Transcript of pre-mRNA processing factor 3, humanhuman

TSL 2

Gene PRPF3, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF3-206ENST00000493553 RTL5Q5HYW3 569 aaPredicted RBP12.65□□□□□ -0.38
PRPF3-206ENST00000493553 RC3H1Q5TC82 1133 aaKnown RBP12.65□□□□□ -0.38
PRPF3-206ENST00000493553 MRGPRX2Q96LB1 330 aa12.65□□□□□ -0.38
PRPF3-206ENST00000493553 BCL2L13Q9BXK5 485 aa12.65□□□□□ -0.38
PRPF3-206ENST00000493553 RGPD8O14715 1765 aaPredicted RBP12.65□□□□□ -0.38
PRPF3-206ENST00000493553 PTPRCP08575 1304 aa12.64□□□□□ -0.39
PRPF3-206ENST00000493553 PHRF1Q9P1Y6 1649 aaKnown RBP12.64□□□□□ -0.39
PRPF3-206ENST00000493553 FOXO3O43524 673 aa12.64□□□□□ -0.39
PRPF3-206ENST00000493553 GCP02774 474 aa12.64□□□□□ -0.39
PRPF3-206ENST00000493553 ARHGEF25Q86VW2 580 aa12.64□□□□□ -0.39
PRPF3-206ENST00000493553 ITPRIPQ8IWB1 547 aa12.64□□□□□ -0.39
PRPF3-206ENST00000493553 SLIT3O75094 1523 aa12.63□□□□□ -0.39
PRPF3-206ENST00000493553 NFAT5O94916 1531 aa12.63□□□□□ -0.39
PRPF3-206ENST00000493553 F12P00748 615 aaPredicted RBP12.63□□□□□ -0.39
PRPF3-206ENST00000493553 MTHFSDQ2M296 383 aaKnown RBP12.63□□□□□ -0.39
PRPF3-206ENST00000493553 PLEKHO1Q53GL0 409 aaPredicted RBP12.63□□□□□ -0.39
PRPF3-206ENST00000493553 HELBQ8NG08 1087 aaPredicted RBP12.63□□□□□ -0.39
PRPF3-206ENST00000493553 SNIP1Q8TAD8 396 aaKnown RBP12.63□□□□□ -0.39
PRPF3-206ENST00000493553 ORAI2Q96SN7 254 aa12.63□□□□□ -0.39
PRPF3-206ENST00000493553 BACH2Q9BYV9 841 aa12.63□□□□□ -0.39
PRPF3-206ENST00000493553 MAP3K5Q99683 1374 aa12.63□□□□□ -0.39
PRPF3-206ENST00000493553 TTC24A2A3L6 582 aaPredicted RBP12.62□□□□□ -0.39
PRPF3-206ENST00000493553 RLBP1P12271 317 aa12.62□□□□□ -0.39
PRPF3-206ENST00000493553 MYT1Q01538 1121 aa12.62□□□□□ -0.39
PRPF3-206ENST00000493553 NUTM2GQ5VZR2 741 aa12.62□□□□□ -0.39
PRPF3-206ENST00000493553 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.62□□□□□ -0.39
PRPF3-206ENST00000493553 CRB1P82279 1406 aa12.62□□□□□ -0.39
PRPF3-206ENST00000493553 EIF5BO60841 1220 aaKnown RBP12.61□□□□□ -0.39
PRPF3-206ENST00000493553 CTHP32929 405 aa12.61□□□□□ -0.39
PRPF3-206ENST00000493553 SH3BP2P78314 561 aa12.61□□□□□ -0.39
PRPF3-206ENST00000493553 TAF7Q15545 349 aaPredicted RBP12.61□□□□□ -0.39
PRPF3-206ENST00000493553 TSC1Q92574 1164 aa12.61□□□□□ -0.39
PRPF3-206ENST00000493553 THUMPD2Q9BTF0 503 aaKnown RBP12.61□□□□□ -0.39
PRPF3-206ENST00000493553 ZBTB40Q9NUA8 1239 aa12.61□□□□□ -0.39
PRPF3-206ENST00000493553 TSPYL4Q9UJ04 414 aa12.61□□□□□ -0.39
PRPF3-206ENST00000493553 ABCC6O95255 1503 aa12.61□□□□□ -0.39
PRPF3-206ENST00000493553 NCAPD2Q15021 1401 aa12.61□□□□□ -0.39
PRPF3-206ENST00000493553 HOXB7P09629 217 aa12.6□□□□□ -0.39
PRPF3-206ENST00000493553 PROCA1Q8NCQ7 364 aaPredicted RBP12.6□□□□□ -0.39
PRPF3-206ENST00000493553 STK31Q9BXU1 1019 aa12.6□□□□□ -0.39
PRPF3-206ENST00000493553 GOPCQ9HD26 462 aa12.6□□□□□ -0.39
PRPF3-206ENST00000493553 OVOS2A0A0G2JMS6 1433 aa12.6□□□□□ -0.39
PRPF3-206ENST00000493553 ABCC4O15439 1325 aa12.6□□□□□ -0.39
PRPF3-206ENST00000493553 FAM83GA6ND36 823 aa12.59□□□□□ -0.39
PRPF3-206ENST00000493553 CCDC30Q5VVM6 783 aa12.59□□□□□ -0.39
PRPF3-206ENST00000493553 PPP2R2DQ66LE6 453 aa12.59□□□□□ -0.39
PRPF3-206ENST00000493553 MCM10Q7L590 875 aa12.59□□□□□ -0.39
PRPF3-206ENST00000493553 TMEM57Q8N5G2 664 aa12.59□□□□□ -0.39
PRPF3-206ENST00000493553 C8orf58Q8NAV2 365 aa12.59□□□□□ -0.39
PRPF3-206ENST00000493553 BAP1Q92560 729 aa12.59□□□□□ -0.39
PRPF3-206ENST00000493553 MAP10Q9P2G4 905 aa12.59□□□□□ -0.39
PRPF3-206ENST00000493553 LMTK3Q96Q04 1460 aa12.59□□□□□ -0.39
PRPF3-206ENST00000493553 AVPP01185 164 aa12.58□□□□□ -0.4
PRPF3-206ENST00000493553 AKAP4Q5JQC9 854 aa12.58□□□□□ -0.4
PRPF3-206ENST00000493553 C1orf141Q5JVX7 400 aa12.58□□□□□ -0.4
PRPF3-206ENST00000493553 INTS3Q68E01 1043 aaKnown RBP12.58□□□□□ -0.4
PRPF3-206ENST00000493553 ZNF511Q8NB15 262 aa12.58□□□□□ -0.4
PRPF3-206ENST00000493553 GCC1Q96CN9 775 aa12.58□□□□□ -0.4
PRPF3-206ENST00000493553 IGHDP01880 384 aa12.57□□□□□ -0.4
PRPF3-206ENST00000493553 DCTN1Q14203 1278 aa12.57□□□□□ -0.4
PRPF3-206ENST00000493553 ERICH6Q7L0X2 663 aa12.57□□□□□ -0.4
PRPF3-206ENST00000493553 TSPYL6Q8N831 410 aa12.57□□□□□ -0.4
PRPF3-206ENST00000493553 LTV1Q96GA3 475 aaPredicted RBP12.57□□□□□ -0.4
PRPF3-206ENST00000493553 MARF1Q9Y4F3 1742 aaKnown RBP12.57□□□□□ -0.4
PRPF3-206ENST00000493553 DLG5Q8TDM6 1919 aa12.56□□□□□ -0.4
PRPF3-206ENST00000493553 TNS3Q68CZ2 1445 aa12.56□□□□□ -0.4
PRPF3-206ENST00000493553 SMPD1P17405 629 aa12.56□□□□□ -0.4
PRPF3-206ENST00000493553 CCT4P50991 539 aaKnown RBP12.56□□□□□ -0.4
PRPF3-206ENST00000493553 LINC01559Q495D7 138 aa12.56□□□□□ -0.4
PRPF3-206ENST00000493553 SMC5Q8IY18 1101 aa12.56□□□□□ -0.4
PRPF3-206ENST00000493553 CRIPAKQ8N1N5 446 aa12.56□□□□□ -0.4
PRPF3-206ENST00000493553 EHBP1Q8NDI1 1231 aa12.56□□□□□ -0.4
PRPF3-206ENST00000493553 ANKRD24Q8TF21 1146 aa12.56□□□□□ -0.4
PRPF3-206ENST00000493553 CEMIPQ8WUJ3 1361 aa12.56□□□□□ -0.4
PRPF3-206ENST00000493553 ELL2O00472 640 aaPredicted RBP12.55□□□□□ -0.4
PRPF3-206ENST00000493553 ZBTB7BO15156 539 aaPredicted RBP12.55□□□□□ -0.4
PRPF3-206ENST00000493553 TEFQ10587 303 aa12.55□□□□□ -0.4
PRPF3-206ENST00000493553 NBPF6Q5VWK0 638 aa12.55□□□□□ -0.4
PRPF3-206ENST00000493553 NBPF4Q96M43 638 aa12.55□□□□□ -0.4
PRPF3-206ENST00000493553 IPO9Q96P70 1041 aaKnown RBP12.55□□□□□ -0.4
PRPF3-206ENST00000493553 UPF2Q9HAU5 1272 aaKnown RBP12.55□□□□□ -0.4
PRPF3-206ENST00000493553 SPATA31A3Q5VYP0 1347 aa12.55□□□□□ -0.4
PRPF3-206ENST00000493553 CPDO75976 1380 aa12.55□□□□□ -0.4
PRPF3-206ENST00000493553 TRPM3Q9HCF6 1732 aaPredicted RBP12.54□□□□□ -0.4
PRPF3-206ENST00000493553 SIAH2O43255 324 aa12.54□□□□□ -0.4
PRPF3-206ENST00000493553 ZNF530Q6P9A1 599 aaPredicted RBP12.54□□□□□ -0.4
PRPF3-206ENST00000493553 RPAP2Q8IXW5 612 aaPredicted RBP12.54□□□□□ -0.4
PRPF3-206ENST00000493553 RAPGEF4Q8WZA2 1011 aa12.54□□□□□ -0.4
PRPF3-206ENST00000493553 J3QL48 77 aa12.53□□□□□ -0.4
PRPF3-206ENST00000493553 RGS3P49796 1198 aa12.53□□□□□ -0.4
PRPF3-206ENST00000493553 HSPA2P54652 639 aa12.53□□□□□ -0.4
PRPF3-206ENST00000493553 IL17REQ8NFR9 667 aa12.53□□□□□ -0.4
PRPF3-206ENST00000493553 SPG7Q9UQ90 795 aa12.53□□□□□ -0.4
PRPF3-206ENST00000493553 HDAC5Q9UQL6 1122 aa12.53□□□□□ -0.4
PRPF3-206ENST00000493553 LTN1O94822 1766 aa12.52□□□□□ -0.41
PRPF3-206ENST00000493553 ZBTB7CA1YPR0 619 aa12.52□□□□□ -0.41
PRPF3-206ENST00000493553 HMMRO75330 724 aa12.52□□□□□ -0.41
PRPF3-206ENST00000493553 HSP90AB1P08238 724 aaKnown RBP12.52□□□□□ -0.41
PRPF3-206ENST00000493553 VARSP26640 1264 aaKnown RBP12.52□□□□□ -0.41
PRPF3-206ENST00000493553 CTDSPL2Q05D32 466 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms