RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 PPP1R42Q7Z4L9 355 aa17.32■□□□□ 0.36
HDAC3-213ENST00000492506 PLEKHF1Q96S99 279 aa17.32■□□□□ 0.36
HDAC3-213ENST00000492506 THUMPD2Q9BTF0 503 aaKnown RBP17.32■□□□□ 0.36
HDAC3-213ENST00000492506 TSHZ2Q9NRE2 1034 aa17.32■□□□□ 0.36
HDAC3-213ENST00000492506 LRRC37AA6NMS7 1700 aa17.32■□□□□ 0.36
HDAC3-213ENST00000492506 DUOX1Q9NRD9 1551 aa17.32■□□□□ 0.36
HDAC3-213ENST00000492506 CA12O43570 354 aa17.31■□□□□ 0.36
HDAC3-213ENST00000492506 BRPF1P55201 1214 aaPredicted RBP17.31■□□□□ 0.36
HDAC3-213ENST00000492506 PDIA6Q15084 440 aa17.31■□□□□ 0.36
HDAC3-213ENST00000492506 MCOLN1Q9GZU1 580 aa17.31■□□□□ 0.36
HDAC3-213ENST00000492506 CDHR2Q9BYE9 1310 aa17.3■□□□□ 0.36
HDAC3-213ENST00000492506 SP8Q8IXZ3 490 aa17.3■□□□□ 0.36
HDAC3-213ENST00000492506 SUPT20HQ8NEM7 779 aa17.3■□□□□ 0.36
HDAC3-213ENST00000492506 ZC3H15Q8WU90 426 aaKnown RBP17.3■□□□□ 0.36
HDAC3-213ENST00000492506 PDE4DIPQ5VU43 2346 aa17.29■□□□□ 0.36
HDAC3-213ENST00000492506 KIAA2012Q0VF49 1180 aa17.29■□□□□ 0.36
HDAC3-213ENST00000492506 CIAPIN1Q6FI81 312 aa17.29■□□□□ 0.36
HDAC3-213ENST00000492506 TRPM4Q8TD43 1214 aa17.29■□□□□ 0.36
HDAC3-213ENST00000492506 ZIC5Q96T25 663 aa17.29■□□□□ 0.36
HDAC3-213ENST00000492506 UTP14AQ9BVJ6 771 aaKnown RBP17.29■□□□□ 0.36
HDAC3-213ENST00000492506 SUPT16HQ9Y5B9 1047 aaKnown RBP17.29■□□□□ 0.36
HDAC3-213ENST00000492506 DDX60Q8IY21 1712 aaKnown RBP17.28■□□□□ 0.36
HDAC3-213ENST00000492506 SHTN1A0MZ66 631 aa17.28■□□□□ 0.36
HDAC3-213ENST00000492506 YDJCA8MPS7 323 aa17.28■□□□□ 0.36
HDAC3-213ENST00000492506 BBOX1O75936 387 aa17.28■□□□□ 0.36
HDAC3-213ENST00000492506 NFE2L2Q16236 605 aa17.28■□□□□ 0.36
HDAC3-213ENST00000492506 DPP8Q6V1X1 898 aaPredicted RBP17.28■□□□□ 0.36
HDAC3-213ENST00000492506 RAD17O75943 681 aa17.27■□□□□ 0.36
HDAC3-213ENST00000492506 PROSER3Q2NL68 480 aa17.27■□□□□ 0.36
HDAC3-213ENST00000492506 CDC37L1Q7L3B6 337 aa17.27■□□□□ 0.36
HDAC3-213ENST00000492506 MPNDQ8N594 471 aa17.27■□□□□ 0.36
HDAC3-213ENST00000492506 TMX4Q9H1E5 349 aaPredicted RBP17.27■□□□□ 0.36
HDAC3-213ENST00000492506 TNIP1Q15025 636 aa17.26■□□□□ 0.35
HDAC3-213ENST00000492506 DLK2Q6UY11 383 aa17.26■□□□□ 0.35
HDAC3-213ENST00000492506 BCL2L13Q9BXK5 485 aa17.26■□□□□ 0.35
HDAC3-213ENST00000492506 ZNF408Q9H9D4 720 aa17.26■□□□□ 0.35
HDAC3-213ENST00000492506 CNOT7Q9UIV1 285 aaKnown RBP17.26■□□□□ 0.35
HDAC3-213ENST00000492506 AKAP11Q9UKA4 1901 aa17.25■□□□□ 0.35
HDAC3-213ENST00000492506 ANXA1P04083 346 aa17.25■□□□□ 0.35
HDAC3-213ENST00000492506 HCLS1P14317 486 aaPredicted RBP17.25■□□□□ 0.35
HDAC3-213ENST00000492506 NLRP10Q86W26 655 aa17.25■□□□□ 0.35
HDAC3-213ENST00000492506 COL4A1P02462 1669 aa17.24■□□□□ 0.35
HDAC3-213ENST00000492506 NEFMP07197 916 aa17.24■□□□□ 0.35
HDAC3-213ENST00000492506 NOGQ13253 232 aa17.24■□□□□ 0.35
HDAC3-213ENST00000492506 DGKZQ13574 1117 aa17.24■□□□□ 0.35
HDAC3-213ENST00000492506 GRAPQ13588 217 aa17.24■□□□□ 0.35
HDAC3-213ENST00000492506 GRAPLQ8TC17 118 aaPredicted RBP17.24■□□□□ 0.35
HDAC3-213ENST00000492506 FAM155AB1AL88 458 aaPredicted RBP17.23■□□□□ 0.35
HDAC3-213ENST00000492506 USP48Q86UV5 1035 aa17.23■□□□□ 0.35
HDAC3-213ENST00000492506 SCN9AQ15858 1988 aa17.22■□□□□ 0.35
HDAC3-213ENST00000492506 EGFRP00533 1210 aa17.22■□□□□ 0.35
HDAC3-213ENST00000492506 EIF2S2P20042 333 aaKnown RBP17.22■□□□□ 0.35
HDAC3-213ENST00000492506 HUNKP57058 714 aa17.22■□□□□ 0.35
HDAC3-213ENST00000492506 DDX46Q7L014 1031 aaKnown RBP17.22■□□□□ 0.35
HDAC3-213ENST00000492506 MICALL2Q8IY33 904 aa17.22■□□□□ 0.35
HDAC3-213ENST00000492506 CFAP44Q96MT7 982 aa17.22■□□□□ 0.35
HDAC3-213ENST00000492506 YTHDC1Q96MU7 727 aaKnown RBP17.22■□□□□ 0.35
HDAC3-213ENST00000492506 TSPYL4Q9UJ04 414 aa17.22■□□□□ 0.35
HDAC3-213ENST00000492506 ZBTB12Q9Y330 459 aaPredicted RBP17.22■□□□□ 0.35
HDAC3-213ENST00000492506 H7C1D1 291 aa17.21■□□□□ 0.35
HDAC3-213ENST00000492506 COPS6Q7L5N1 327 aa17.21■□□□□ 0.35
HDAC3-213ENST00000492506 SAMD7Q7Z3H4 446 aa17.21■□□□□ 0.35
HDAC3-213ENST00000492506 DPF2Q92785 391 aa17.21■□□□□ 0.35
HDAC3-213ENST00000492506 SH3TC1Q8TE82 1336 aa17.21■□□□□ 0.34
HDAC3-213ENST00000492506 TCIRG1Q13488 830 aa17.2■□□□□ 0.34
HDAC3-213ENST00000492506 HSP90AB3PQ58FF7 597 aa17.2■□□□□ 0.34
HDAC3-213ENST00000492506 MIER1Q8N108 512 aa17.2■□□□□ 0.34
HDAC3-213ENST00000492506 XAGE3Q8WTP9 111 aa17.2■□□□□ 0.34
HDAC3-213ENST00000492506 PCDH10Q9P2E7 1040 aa17.2■□□□□ 0.34
HDAC3-213ENST00000492506 PSMD14O00487 310 aa17.19■□□□□ 0.34
HDAC3-213ENST00000492506 RGMBQ6NW40 437 aa17.19■□□□□ 0.34
HDAC3-213ENST00000492506 TMC4Q7Z404 712 aa17.19■□□□□ 0.34
HDAC3-213ENST00000492506 TRMT112Q9UI30 125 aaKnown RBP17.19■□□□□ 0.34
HDAC3-213ENST00000492506 AIMP1Q12904 312 aaKnown RBP17.18■□□□□ 0.34
HDAC3-213ENST00000492506 TBC1D10BQ4KMP7 808 aaPredicted RBP17.18■□□□□ 0.34
HDAC3-213ENST00000492506 KCNQ5Q9NR82 932 aa17.18■□□□□ 0.34
HDAC3-213ENST00000492506 BABAM1Q9NWV8 329 aa17.18■□□□□ 0.34
HDAC3-213ENST00000492506 SAGE1Q9NXZ1 904 aa17.18■□□□□ 0.34
HDAC3-213ENST00000492506 PSME4Q14997 1843 aa17.18■□□□□ 0.34
HDAC3-213ENST00000492506 RTL9Q8NET4 1388 aa17.17■□□□□ 0.34
HDAC3-213ENST00000492506 ADM5C9JUS6 153 aa17.17■□□□□ 0.34
HDAC3-213ENST00000492506 KIF23Q02241 960 aaPredicted RBP17.17■□□□□ 0.34
HDAC3-213ENST00000492506 WASHC4Q2M389 1173 aa17.17■□□□□ 0.34
HDAC3-213ENST00000492506 KRT26Q7Z3Y9 468 aa17.17■□□□□ 0.34
HDAC3-213ENST00000492506 CELF1Q92879 486 aaKnown RBP17.17■□□□□ 0.34
HDAC3-213ENST00000492506 DBNDD1Q9H9R9 158 aa17.17■□□□□ 0.34
HDAC3-213ENST00000492506 GBA2Q9HCG7 927 aaPredicted RBP17.17■□□□□ 0.34
HDAC3-213ENST00000492506 POLLQ9UGP5 575 aa17.17■□□□□ 0.34
HDAC3-213ENST00000492506 MAPK8IP3Q9UPT6 1336 aa17.17■□□□□ 0.34
HDAC3-213ENST00000492506 NECTIN2Q92692 538 aa17.16■□□□□ 0.34
HDAC3-213ENST00000492506 ZNF428Q96B54 188 aa17.16■□□□□ 0.34
HDAC3-213ENST00000492506 PNNQ9H307 717 aaKnown RBP17.16■□□□□ 0.34
HDAC3-213ENST00000492506 RIPK4P57078 832 aa17.15■□□□□ 0.34
HDAC3-213ENST00000492506 SF3B3Q15393 1217 aaKnown RBP17.15■□□□□ 0.34
HDAC3-213ENST00000492506 CCDC102AQ96A19 550 aa17.15■□□□□ 0.34
HDAC3-213ENST00000492506 RNF186Q9NXI6 227 aa17.15■□□□□ 0.34
HDAC3-213ENST00000492506 NSFL1CQ9UNZ2 370 aaKnown RBP17.15■□□□□ 0.34
HDAC3-213ENST00000492506 RIMBP2O15034 1052 aa17.14■□□□□ 0.33
HDAC3-213ENST00000492506 RPS12P25398 132 aaKnown RBP17.14■□□□□ 0.33
HDAC3-213ENST00000492506 GPSM2P81274 684 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms