RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 TLL2Q9Y6L7 1015 aa10.9□□□□□ -0.66
USP39-216ENST00000490193 LAMB2P55268 1798 aa10.9□□□□□ -0.67
USP39-216ENST00000490193 ERBB4Q15303 1308 aa10.89□□□□□ -0.67
USP39-216ENST00000490193 NTSR2O95665 410 aa10.89□□□□□ -0.67
USP39-216ENST00000490193 PPP2R1AP30153 589 aa10.89□□□□□ -0.67
USP39-216ENST00000490193 MAP2K2P36507 400 aa10.89□□□□□ -0.67
USP39-216ENST00000490193 CNGB1Q14028 1251 aaPredicted RBP10.89□□□□□ -0.67
USP39-216ENST00000490193 KIF6Q6ZMV9 814 aa10.89□□□□□ -0.67
USP39-216ENST00000490193 TTLL7Q6ZT98 887 aa10.89□□□□□ -0.67
USP39-216ENST00000490193 ZNF34Q8IZ26 560 aa10.89□□□□□ -0.67
USP39-216ENST00000490193 RBM17Q96I25 401 aaKnown RBP10.89□□□□□ -0.67
USP39-216ENST00000490193 CDHR2Q9BYE9 1310 aa10.88□□□□□ -0.67
USP39-216ENST00000490193 CCDC85CA6NKD9 419 aa10.88□□□□□ -0.67
USP39-216ENST00000490193 PPEF1O14829 653 aaPredicted RBP10.88□□□□□ -0.67
USP39-216ENST00000490193 EIF4A1P60842 406 aaKnown RBP10.88□□□□□ -0.67
USP39-216ENST00000490193 FMR1Q06787 632 aaKnown RBP eCLIP10.88□□□□□ -0.67
USP39-216ENST00000490193 SUSD4Q5VX71 490 aa10.88□□□□□ -0.67
USP39-216ENST00000490193 CYP4F22Q6NT55 531 aa10.88□□□□□ -0.67
USP39-216ENST00000490193 GIGYF2Q6Y7W6 1299 aaKnown RBP10.88□□□□□ -0.67
USP39-216ENST00000490193 NIM1KQ8IY84 436 aa10.88□□□□□ -0.67
USP39-216ENST00000490193 HHIPL1Q96JK4 782 aa10.88□□□□□ -0.67
USP39-216ENST00000490193 GPR101Q96P66 508 aaPredicted RBP10.88□□□□□ -0.67
USP39-216ENST00000490193 BEGAINQ9BUH8 593 aa10.88□□□□□ -0.67
USP39-216ENST00000490193 ADARB2Q9NS39 739 aaKnown RBP10.88□□□□□ -0.67
USP39-216ENST00000490193 GPRC5DQ9NZD1 345 aa10.88□□□□□ -0.67
USP39-216ENST00000490193 PGAP2Q9UHJ9 254 aa10.88□□□□□ -0.67
USP39-216ENST00000490193 LRRC37AA6NMS7 1700 aa10.87□□□□□ -0.67
USP39-216ENST00000490193 TRAF5O00463 557 aa10.87□□□□□ -0.67
USP39-216ENST00000490193 CA12O43570 354 aa10.87□□□□□ -0.67
USP39-216ENST00000490193 GPTP24298 496 aa10.87□□□□□ -0.67
USP39-216ENST00000490193 PARP10Q53GL7 1025 aa10.87□□□□□ -0.67
USP39-216ENST00000490193 SLC10A5Q5PT55 438 aa10.87□□□□□ -0.67
USP39-216ENST00000490193 SLC51AQ86UW1 340 aa10.87□□□□□ -0.67
USP39-216ENST00000490193 RTFDC1Q9BY42 306 aaPredicted RBP10.87□□□□□ -0.67
USP39-216ENST00000490193 MIS18AQ9NYP9 233 aa10.87□□□□□ -0.67
USP39-216ENST00000490193 ATP6V0A2Q9Y487 856 aa10.87□□□□□ -0.67
USP39-216ENST00000490193 PPIP5K2O43314 1243 aa10.86□□□□□ -0.67
USP39-216ENST00000490193 C3orf67Q6ZVT6 689 aa10.86□□□□□ -0.67
USP39-216ENST00000490193 LRP10Q7Z4F1 713 aa10.86□□□□□ -0.67
USP39-216ENST00000490193 PPP1R42Q7Z4L9 355 aa10.86□□□□□ -0.67
USP39-216ENST00000490193 SAPCD2Q86UD0 394 aa10.86□□□□□ -0.67
USP39-216ENST00000490193 NGEFQ8N5V2 710 aa10.86□□□□□ -0.67
USP39-216ENST00000490193 ZBTB3Q9H5J0 574 aa10.86□□□□□ -0.67
USP39-216ENST00000490193 ZNRF3Q9ULT6 936 aa10.86□□□□□ -0.67
USP39-216ENST00000490193 RRP7AQ9Y3A4 280 aaKnown RBP10.86□□□□□ -0.67
USP39-216ENST00000490193 MYL6BP14649 208 aa10.85□□□□□ -0.67
USP39-216ENST00000490193 BRPF1P55201 1214 aaPredicted RBP10.85□□□□□ -0.67
USP39-216ENST00000490193 CXCL9Q07325 125 aa10.85□□□□□ -0.67
USP39-216ENST00000490193 AOC3Q16853 763 aa10.85□□□□□ -0.67
USP39-216ENST00000490193 PAXIP1Q6ZW49 1069 aaPredicted RBP10.85□□□□□ -0.67
USP39-216ENST00000490193 SUPT20HQ8NEM7 779 aa10.85□□□□□ -0.67
USP39-216ENST00000490193 ZC3H15Q8WU90 426 aaKnown RBP10.85□□□□□ -0.67
USP39-216ENST00000490193 NLRP3Q96P20 1036 aa10.85□□□□□ -0.67
USP39-216ENST00000490193 PLEKHF1Q96S99 279 aa10.85□□□□□ -0.67
USP39-216ENST00000490193 DUOX1Q9NRD9 1551 aa10.85□□□□□ -0.67
USP39-216ENST00000490193 CASP8AP2Q9UKL3 1982 aa10.85□□□□□ -0.67
USP39-216ENST00000490193 ABCC4O15439 1325 aa10.84□□□□□ -0.67
USP39-216ENST00000490193 AOC2O75106 756 aa10.84□□□□□ -0.67
USP39-216ENST00000490193 NEFMP07197 916 aa10.84□□□□□ -0.67
USP39-216ENST00000490193 KIAA2012Q0VF49 1180 aa10.84□□□□□ -0.67
USP39-216ENST00000490193 TMX4Q9H1E5 349 aaPredicted RBP10.84□□□□□ -0.67
USP39-216ENST00000490193 TCERG1O14776 1098 aaKnown RBP10.83□□□□□ -0.68
USP39-216ENST00000490193 BBOX1O75936 387 aa10.83□□□□□ -0.68
USP39-216ENST00000490193 CELF2O95319 508 aaKnown RBP10.83□□□□□ -0.68
USP39-216ENST00000490193 GMPSP49915 693 aaPredicted RBP10.83□□□□□ -0.68
USP39-216ENST00000490193 GRM1Q13255 1194 aa10.83□□□□□ -0.68
USP39-216ENST00000490193 PDIA6Q15084 440 aa10.83□□□□□ -0.68
USP39-216ENST00000490193 NFE2L2Q16236 605 aa10.83□□□□□ -0.68
USP39-216ENST00000490193 CIAPIN1Q6FI81 312 aa10.83□□□□□ -0.68
USP39-216ENST00000490193 SP8Q8IXZ3 490 aa10.83□□□□□ -0.68
USP39-216ENST00000490193 UTP14AQ9BVJ6 771 aaKnown RBP10.83□□□□□ -0.68
USP39-216ENST00000490193 DDX60Q8IY21 1712 aaKnown RBP10.83□□□□□ -0.68
USP39-216ENST00000490193 TAF1P21675 1872 aa10.83□□□□□ -0.68
USP39-216ENST00000490193 HIRAP54198 1017 aaPredicted RBP10.82□□□□□ -0.68
USP39-216ENST00000490193 TNIP1Q15025 636 aa10.82□□□□□ -0.68
USP39-216ENST00000490193 DPP8Q6V1X1 898 aaPredicted RBP10.82□□□□□ -0.68
USP39-216ENST00000490193 GLIS2Q9BZE0 524 aaPredicted RBP10.82□□□□□ -0.68
USP39-216ENST00000490193 SCUBE2Q9NQ36 999 aa10.82□□□□□ -0.68
USP39-216ENST00000490193 NOGQ13253 232 aa10.81□□□□□ -0.68
USP39-216ENST00000490193 LCE2DQ5TA82 110 aaPredicted RBP10.81□□□□□ -0.68
USP39-216ENST00000490193 CDC37L1Q7L3B6 337 aa10.81□□□□□ -0.68
USP39-216ENST00000490193 TMC4Q7Z404 712 aa10.81□□□□□ -0.68
USP39-216ENST00000490193 MPNDQ8N594 471 aa10.81□□□□□ -0.68
USP39-216ENST00000490193 THUMPD2Q9BTF0 503 aaKnown RBP10.81□□□□□ -0.68
USP39-216ENST00000490193 MCOLN1Q9GZU1 580 aa10.81□□□□□ -0.68
USP39-216ENST00000490193 BABAM1Q9NWV8 329 aa10.81□□□□□ -0.68
USP39-216ENST00000490193 TSKSQ9UJT2 592 aa10.81□□□□□ -0.68
USP39-216ENST00000490193 PDE4DIPQ5VU43 2346 aa10.8□□□□□ -0.68
USP39-216ENST00000490193 GRAPQ13588 217 aa10.8□□□□□ -0.68
USP39-216ENST00000490193 HSP90AB3PQ58FF7 597 aa10.8□□□□□ -0.68
USP39-216ENST00000490193 NLRP10Q86W26 655 aa10.8□□□□□ -0.68
USP39-216ENST00000490193 GRAPLQ8TC17 118 aaPredicted RBP10.8□□□□□ -0.68
USP39-216ENST00000490193 TRPM4Q8TD43 1214 aa10.8□□□□□ -0.68
USP39-216ENST00000490193 DPF2Q92785 391 aa10.8□□□□□ -0.68
USP39-216ENST00000490193 PNNQ9H307 717 aaKnown RBP10.8□□□□□ -0.68
USP39-216ENST00000490193 POLR2AP24928 1970 aaKnown RBP10.79□□□□□ -0.68
USP39-216ENST00000490193 YDJCA8MPS7 323 aa10.79□□□□□ -0.68
USP39-216ENST00000490193 RAD17O75943 681 aa10.79□□□□□ -0.68
USP39-216ENST00000490193 ATN1P54259 1190 aaPredicted RBP10.79□□□□□ -0.68
USP39-216ENST00000490193 PROSER3Q2NL68 480 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms