RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 TRIM17Q9Y577 477 aa10□□□□□ -0.81
COL9A1-209ENST00000489861 ASTN2O75129 1339 aaPredicted RBP10□□□□□ -0.81
COL9A1-209ENST00000489861 NUP98P52948 1817 aa10□□□□□ -0.81
COL9A1-209ENST00000489861 RIC1Q4ADV7 1423 aa9.99□□□□□ -0.81
COL9A1-209ENST00000489861 PRAMEF22A3QJZ6 481 aa9.99□□□□□ -0.81
COL9A1-209ENST00000489861 SOX1O00570 391 aaPredicted RBP9.99□□□□□ -0.81
COL9A1-209ENST00000489861 PPEF1O14829 653 aaPredicted RBP9.99□□□□□ -0.81
COL9A1-209ENST00000489861 TNIP1Q15025 636 aa9.99□□□□□ -0.81
COL9A1-209ENST00000489861 ZNF790Q6PG37 636 aa9.99□□□□□ -0.81
COL9A1-209ENST00000489861 MOB2Q70IA6 237 aa9.99□□□□□ -0.81
COL9A1-209ENST00000489861 NPM2Q86SE8 214 aaKnown RBP9.99□□□□□ -0.81
COL9A1-209ENST00000489861 ARMC5Q96C12 935 aa9.99□□□□□ -0.81
COL9A1-209ENST00000489861 DCPSQ96C86 337 aaKnown RBP9.99□□□□□ -0.81
COL9A1-209ENST00000489861 CDCA5Q96FF9 252 aa9.99□□□□□ -0.81
COL9A1-209ENST00000489861 VPS33BQ9H267 617 aa9.99□□□□□ -0.81
COL9A1-209ENST00000489861 PRO3102Q9H379 93 aa9.99□□□□□ -0.81
COL9A1-209ENST00000489861 SPTBN5Q9NRC6 3674 aaKnown RBP9.98□□□□□ -0.81
COL9A1-209ENST00000489861 TAF1P21675 1872 aa9.98□□□□□ -0.81
COL9A1-209ENST00000489861 GTF2E1P29083 439 aaPredicted RBP9.98□□□□□ -0.81
COL9A1-209ENST00000489861 HLFQ16534 295 aa9.98□□□□□ -0.81
COL9A1-209ENST00000489861 RBM26Q5T8P6 1007 aaKnown RBP9.98□□□□□ -0.81
COL9A1-209ENST00000489861 C3orf67Q6ZVT6 689 aa9.98□□□□□ -0.81
COL9A1-209ENST00000489861 RPGRQ92834 1020 aaKnown RBP9.98□□□□□ -0.81
COL9A1-209ENST00000489861 LRCH3Q96II8 777 aa9.98□□□□□ -0.81
COL9A1-209ENST00000489861 CFHR5Q9BXR6 569 aa9.98□□□□□ -0.81
COL9A1-209ENST00000489861 RTFDC1Q9BY42 306 aaPredicted RBP9.98□□□□□ -0.81
COL9A1-209ENST00000489861 ZNF652Q9Y2D9 606 aa9.98□□□□□ -0.81
COL9A1-209ENST00000489861 USP16Q9Y5T5 823 aa9.98□□□□□ -0.81
COL9A1-209ENST00000489861 KIF7Q2M1P5 1343 aa9.98□□□□□ -0.81
COL9A1-209ENST00000489861 KIAA2012Q0VF49 1180 aa9.97□□□□□ -0.81
COL9A1-209ENST00000489861 MTHFSDQ2M296 383 aaKnown RBP9.97□□□□□ -0.81
COL9A1-209ENST00000489861 CRAMP1Q96RY5 1269 aa9.97□□□□□ -0.81
COL9A1-209ENST00000489861 PTPN22Q9Y2R2 807 aa9.97□□□□□ -0.81
COL9A1-209ENST00000489861 SCN9AQ15858 1988 aa9.96□□□□□ -0.81
COL9A1-209ENST00000489861 UBE2Q2LH0YL09 131 aa9.96□□□□□ -0.82
COL9A1-209ENST00000489861 PSMD14O00487 310 aa9.96□□□□□ -0.82
COL9A1-209ENST00000489861 KCNQ3O43525 872 aa9.96□□□□□ -0.82
COL9A1-209ENST00000489861 IL13P35225 146 aa9.96□□□□□ -0.82
COL9A1-209ENST00000489861 CAP1Q01518 475 aa9.96□□□□□ -0.82
COL9A1-209ENST00000489861 MKRN3Q13064 507 aaKnown RBP9.96□□□□□ -0.82
COL9A1-209ENST00000489861 DPF2Q92785 391 aa9.96□□□□□ -0.82
COL9A1-209ENST00000489861 GGA3Q9NZ52 723 aa9.96□□□□□ -0.82
COL9A1-209ENST00000489861 ATP6V0A2Q9Y487 856 aa9.96□□□□□ -0.82
COL9A1-209ENST00000489861 LAMB4A4D0S4 1761 aa9.96□□□□□ -0.82
COL9A1-209ENST00000489861 KDM3BQ7LBC6 1761 aa9.96□□□□□ -0.82
COL9A1-209ENST00000489861 SULF1Q8IWU6 871 aa9.95□□□□□ -0.82
COL9A1-209ENST00000489861 RBM17Q96I25 401 aaKnown RBP9.95□□□□□ -0.82
COL9A1-209ENST00000489861 LAMB2P55268 1798 aa9.94□□□□□ -0.82
COL9A1-209ENST00000489861 DUOX1Q9NRD9 1551 aa9.94□□□□□ -0.82
COL9A1-209ENST00000489861 NBPF26B4DH59 902 aa9.94□□□□□ -0.82
COL9A1-209ENST00000489861 FKBP1BP68106 108 aa9.94□□□□□ -0.82
COL9A1-209ENST00000489861 NBPF10Q6P3W6 841 aaKnown RBP9.94□□□□□ -0.82
COL9A1-209ENST00000489861 SUPT20HQ8NEM7 779 aa9.94□□□□□ -0.82
COL9A1-209ENST00000489861 IL17REQ8NFR9 667 aa9.94□□□□□ -0.82
COL9A1-209ENST00000489861 ZNF333Q96JL9 665 aa9.94□□□□□ -0.82
COL9A1-209ENST00000489861 FMNL2Q96PY5 1086 aa9.94□□□□□ -0.82
COL9A1-209ENST00000489861 TMEM106CQ9BVX2 250 aa9.94□□□□□ -0.82
COL9A1-209ENST00000489861 RGL2O15211 777 aa9.93□□□□□ -0.82
COL9A1-209ENST00000489861 KIF4BQ2VIQ3 1234 aa9.93□□□□□ -0.82
COL9A1-209ENST00000489861 DPP8Q6V1X1 898 aaPredicted RBP9.93□□□□□ -0.82
COL9A1-209ENST00000489861 KCNQ5Q9NR82 932 aa9.93□□□□□ -0.82
COL9A1-209ENST00000489861 SCAF8Q9UPN6 1271 aaKnown RBP9.93□□□□□ -0.82
COL9A1-209ENST00000489861 ZNF609O15014 1411 aa9.92□□□□□ -0.82
COL9A1-209ENST00000489861 WTIPA6NIX2 430 aaPredicted RBP9.92□□□□□ -0.82
COL9A1-209ENST00000489861 HMOX1P09601 288 aa9.92□□□□□ -0.82
COL9A1-209ENST00000489861 CD99L2Q8TCZ2 262 aa9.92□□□□□ -0.82
COL9A1-209ENST00000489861 NYXQ9GZU5 481 aa9.92□□□□□ -0.82
COL9A1-209ENST00000489861 PRDM6Q9NQX0 595 aa9.92□□□□□ -0.82
COL9A1-209ENST00000489861 LAMB1P07942 1786 aa9.91□□□□□ -0.82
COL9A1-209ENST00000489861 RTL9Q8NET4 1388 aa9.91□□□□□ -0.82
COL9A1-209ENST00000489861 ABCC4O15439 1325 aa9.91□□□□□ -0.82
COL9A1-209ENST00000489861 UBN2Q6ZU65 1347 aa9.91□□□□□ -0.82
COL9A1-209ENST00000489861 TEFQ10587 303 aa9.91□□□□□ -0.82
COL9A1-209ENST00000489861 SREBF2Q12772 1141 aa9.91□□□□□ -0.82
COL9A1-209ENST00000489861 TRIM26Q12899 539 aaPredicted RBP9.91□□□□□ -0.82
COL9A1-209ENST00000489861 ANGEL2Q5VTE6 544 aaKnown RBP9.91□□□□□ -0.82
COL9A1-209ENST00000489861 PRAMEF18Q5VWM3 479 aa9.91□□□□□ -0.82
COL9A1-209ENST00000489861 MPNDQ8N594 471 aa9.91□□□□□ -0.82
COL9A1-209ENST00000489861 DPF3Q92784 378 aa9.91□□□□□ -0.82
COL9A1-209ENST00000489861 ANKRD36CQ5JPF3 1778 aa9.91□□□□□ -0.82
COL9A1-209ENST00000489861 MYCP01106 439 aaPredicted RBP9.9□□□□□ -0.82
COL9A1-209ENST00000489861 SCARF1Q14162 830 aa9.9□□□□□ -0.82
COL9A1-209ENST00000489861 CDCA8Q53HL2 280 aa9.9□□□□□ -0.82
COL9A1-209ENST00000489861 SUSD4Q5VX71 490 aa9.9□□□□□ -0.82
COL9A1-209ENST00000489861 Q7L0L9 218 aa9.9□□□□□ -0.82
COL9A1-209ENST00000489861 SP8Q8IXZ3 490 aa9.9□□□□□ -0.82
COL9A1-209ENST00000489861 TMX4Q9H1E5 349 aaPredicted RBP9.9□□□□□ -0.82
COL9A1-209ENST00000489861 DBNDD1Q9H9R9 158 aa9.9□□□□□ -0.82
COL9A1-209ENST00000489861 STXBP5LQ9Y2K9 1186 aa9.9□□□□□ -0.82
COL9A1-209ENST00000489861 ERBB4Q15303 1308 aa9.89□□□□□ -0.83
COL9A1-209ENST00000489861 GPTP24298 496 aa9.89□□□□□ -0.83
COL9A1-209ENST00000489861 RPS12P25398 132 aaKnown RBP9.89□□□□□ -0.83
COL9A1-209ENST00000489861 SLC4A8Q2Y0W8 1093 aa9.89□□□□□ -0.83
COL9A1-209ENST00000489861 ERO1AQ96HE7 468 aa9.89□□□□□ -0.83
COL9A1-209ENST00000489861 EFCC1Q9HA90 598 aa9.89□□□□□ -0.83
COL9A1-209ENST00000489861 LRRC37AA6NMS7 1700 aa9.89□□□□□ -0.83
COL9A1-209ENST00000489861 DDX60Q8IY21 1712 aaKnown RBP9.89□□□□□ -0.83
COL9A1-209ENST00000489861 ZSWIM8A7E2V4 1837 aa9.89□□□□□ -0.83
COL9A1-209ENST00000489861 PRUNE2Q8WUY3 3088 aa9.88□□□□□ -0.83
COL9A1-209ENST00000489861 IBTKQ9P2D0 1353 aaPredicted RBP9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms