RNA–Protein interactions for RNA: ENST00000487620.1

ZNF3-215, Transcript of zinc finger protein 3, human

TSL 2

Gene ZNF3, Length 2,660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZNF3-215	ENST00000487620	SPDYE4	A6NLX3	237 aa		11.57	□□□□□ -0.56
ZNF3-215	ENST00000487620	RNMT	O43148	476 aa	Known RBP	11.57	□□□□□ -0.56
ZNF3-215	ENST00000487620	JAK2	O60674	1132 aa		11.57	□□□□□ -0.56
ZNF3-215	ENST00000487620	LINS1	Q8NG48	757 aa		11.57	□□□□□ -0.56
ZNF3-215	ENST00000487620	DDX11	Q96FC9	970 aa		11.57	□□□□□ -0.56
ZNF3-215	ENST00000487620	LMO7	Q8WWI1	1683 aa		11.57	□□□□□ -0.56
ZNF3-215	ENST00000487620	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.57	□□□□□ -0.56
ZNF3-215	ENST00000487620	HSP90B1	P14625	803 aa	Known RBP	11.57	□□□□□ -0.56
ZNF3-215	ENST00000487620	ZNF165	P49910	485 aa		11.57	□□□□□ -0.56
ZNF3-215	ENST00000487620	RBM33	Q96EV2	1170 aa	Known RBP	11.57	□□□□□ -0.56
ZNF3-215	ENST00000487620	CLSTN2	Q9H4D0	955 aa		11.57	□□□□□ -0.56
ZNF3-215	ENST00000487620	PHF8	Q9UPP1	1060 aa		11.57	□□□□□ -0.56
ZNF3-215	ENST00000487620	USP54	Q70EL1	1684 aa		11.57	□□□□□ -0.56
ZNF3-215	ENST00000487620		H3BQV1	296 aa		11.56	□□□□□ -0.56
ZNF3-215	ENST00000487620	CEBPZ	Q03701	1054 aa	Known RBP	11.56	□□□□□ -0.56
ZNF3-215	ENST00000487620	IFFO2	Q5TF58	517 aa		11.56	□□□□□ -0.56
ZNF3-215	ENST00000487620	ZHX1	Q9UKY1	873 aa	Predicted RBP	11.56	□□□□□ -0.56
ZNF3-215	ENST00000487620	DDX58	O95786	925 aa	Known RBP	11.56	□□□□□ -0.56
ZNF3-215	ENST00000487620	ZNF75D	P51815	510 aa		11.56	□□□□□ -0.56
ZNF3-215	ENST00000487620	PGBD1	Q96JS3	809 aa		11.56	□□□□□ -0.56
ZNF3-215	ENST00000487620	NDUFB9	Q9Y6M9	179 aa		11.56	□□□□□ -0.56
ZNF3-215	ENST00000487620	MED23	Q9ULK4	1368 aa		11.56	□□□□□ -0.56
ZNF3-215	ENST00000487620	PXDN	Q92626	1479 aa		11.56	□□□□□ -0.56
ZNF3-215	ENST00000487620	ZSCAN25	Q6NSZ9	544 aa		11.55	□□□□□ -0.56
ZNF3-215	ENST00000487620	RIC3	Q7Z5B4	369 aa		11.55	□□□□□ -0.56
ZNF3-215	ENST00000487620	BRF1	Q92994	677 aa		11.55	□□□□□ -0.56
ZNF3-215	ENST00000487620	HMG20B	Q9P0W2	317 aa		11.55	□□□□□ -0.56
ZNF3-215	ENST00000487620	CLIP2	Q9UDT6	1046 aa		11.55	□□□□□ -0.56
ZNF3-215	ENST00000487620	SLIT1	O75093	1534 aa		11.55	□□□□□ -0.56
ZNF3-215	ENST00000487620	TAF5L	O75529	589 aa		11.55	□□□□□ -0.56
ZNF3-215	ENST00000487620	ZSCAN20	P17040	1043 aa	Predicted RBP	11.55	□□□□□ -0.56
ZNF3-215	ENST00000487620	U2AF2	P26368	475 aa	Known RBP eCLIP	11.55	□□□□□ -0.56
ZNF3-215	ENST00000487620	FOSB	P53539	338 aa		11.55	□□□□□ -0.56
ZNF3-215	ENST00000487620	PSME1	Q06323	249 aa		11.55	□□□□□ -0.56
ZNF3-215	ENST00000487620	PLA2G4D	Q86XP0	818 aa		11.55	□□□□□ -0.56
ZNF3-215	ENST00000487620	SNRK	Q9NRH2	765 aa		11.55	□□□□□ -0.56
ZNF3-215	ENST00000487620	MYL6B	P14649	208 aa		11.54	□□□□□ -0.56
ZNF3-215	ENST00000487620	FGD1	P98174	961 aa		11.54	□□□□□ -0.56
ZNF3-215	ENST00000487620	DMTN	Q08495	405 aa		11.54	□□□□□ -0.56
ZNF3-215	ENST00000487620	THEMIS	Q8N1K5	641 aa	Predicted RBP	11.54	□□□□□ -0.56
ZNF3-215	ENST00000487620	GTF3C6	Q969F1	213 aa		11.54	□□□□□ -0.56
ZNF3-215	ENST00000487620	LRRC2	Q9BYS8	371 aa		11.54	□□□□□ -0.56
ZNF3-215	ENST00000487620	ARHGAP23	Q9P227	1491 aa		11.54	□□□□□ -0.56
ZNF3-215	ENST00000487620	CTIF	O43310	598 aa	Known RBP	11.54	□□□□□ -0.56
ZNF3-215	ENST00000487620	CHGB	P05060	677 aa		11.54	□□□□□ -0.56
ZNF3-215	ENST00000487620	TNNT1	P13805	278 aa		11.54	□□□□□ -0.56
ZNF3-215	ENST00000487620	AMOT	Q4VCS5	1084 aa		11.54	□□□□□ -0.56
ZNF3-215	ENST00000487620	CCDC129	Q6ZRS4	1044 aa		11.54	□□□□□ -0.56
ZNF3-215	ENST00000487620	RBM43	Q6ZSC3	357 aa	Known RBP	11.54	□□□□□ -0.56
ZNF3-215	ENST00000487620		Q6ZUG5	572 aa		11.54	□□□□□ -0.56
ZNF3-215	ENST00000487620	TDRD7	Q8NHU6	1098 aa	Known RBP	11.54	□□□□□ -0.56
ZNF3-215	ENST00000487620	NEK1	Q96PY6	1258 aa		11.54	□□□□□ -0.56
ZNF3-215	ENST00000487620	BCL11B	Q9C0K0	894 aa	Predicted RBP	11.54	□□□□□ -0.56
ZNF3-215	ENST00000487620	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	11.54	□□□□□ -0.56
ZNF3-215	ENST00000487620	NFAT5	O94916	1531 aa		11.54	□□□□□ -0.56
ZNF3-215	ENST00000487620	ADGRL3	Q9HAR2	1447 aa		11.54	□□□□□ -0.56
ZNF3-215	ENST00000487620	IGKV5-2	P06315	115 aa		11.53	□□□□□ -0.56
ZNF3-215	ENST00000487620	KRT32	Q14532	448 aa		11.53	□□□□□ -0.56
ZNF3-215	ENST00000487620	ANKRD7	Q92527	254 aa		11.53	□□□□□ -0.56
ZNF3-215	ENST00000487620	DNAJC2	Q99543	621 aa	Known RBP	11.53	□□□□□ -0.56
ZNF3-215	ENST00000487620	UTY	O14607	1347 aa		11.53	□□□□□ -0.56
ZNF3-215	ENST00000487620	GOLGA6L19	H0YKK7	550 aa		11.53	□□□□□ -0.56
ZNF3-215	ENST00000487620	NEXN	Q0ZGT2	675 aa		11.53	□□□□□ -0.56
ZNF3-215	ENST00000487620	REST	Q13127	1097 aa		11.53	□□□□□ -0.56
ZNF3-215	ENST00000487620	TPD52L1	Q16890	204 aa	Predicted RBP	11.53	□□□□□ -0.56
ZNF3-215	ENST00000487620	ESCO1	Q5FWF5	840 aa		11.53	□□□□□ -0.56
ZNF3-215	ENST00000487620	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	11.53	□□□□□ -0.56
ZNF3-215	ENST00000487620	CACTIN	Q8WUQ7	758 aa	Known RBP	11.53	□□□□□ -0.56
ZNF3-215	ENST00000487620	SEC62	Q99442	399 aa	Known RBP	11.53	□□□□□ -0.56
ZNF3-215	ENST00000487620	DDX21	Q9NR30	783 aa	Known RBP eCLIP	11.53	□□□□□ -0.56
ZNF3-215	ENST00000487620	CCDC9	Q9Y3X0	531 aa	Known RBP	11.53	□□□□□ -0.56
ZNF3-215	ENST00000487620	CCDC144B	Q3MJ40	725 aa		11.53	□□□□□ -0.56
ZNF3-215	ENST00000487620	TSGA10IP	Q3SY00	556 aa		11.53	□□□□□ -0.56
ZNF3-215	ENST00000487620	EPHA10	Q5JZY3	1008 aa		11.53	□□□□□ -0.56
ZNF3-215	ENST00000487620	LMOD2	Q6P5Q4	547 aa		11.53	□□□□□ -0.56
ZNF3-215	ENST00000487620	CCDC144CP	Q8IYA2	1237 aa		11.53	□□□□□ -0.56
ZNF3-215	ENST00000487620	KCNH5	Q8NCM2	988 aa		11.53	□□□□□ -0.56
ZNF3-215	ENST00000487620	ZNF592	Q92610	1267 aa		11.53	□□□□□ -0.56
ZNF3-215	ENST00000487620	COL15A1	P39059	1388 aa		11.52	□□□□□ -0.56
ZNF3-215	ENST00000487620	SLC39A6	Q13433	755 aa		11.52	□□□□□ -0.57
ZNF3-215	ENST00000487620	MYD88	Q99836	296 aa		11.52	□□□□□ -0.57
ZNF3-215	ENST00000487620	DBNL	Q9UJU6	430 aa	Known RBP	11.52	□□□□□ -0.57
ZNF3-215	ENST00000487620	CFAP45	Q9UL16	551 aa		11.52	□□□□□ -0.57
ZNF3-215	ENST00000487620	SMTNL1	A8MU46	457 aa		11.52	□□□□□ -0.57
ZNF3-215	ENST00000487620	NCBP1	Q09161	790 aa	Known RBP	11.52	□□□□□ -0.57
ZNF3-215	ENST00000487620	FTO	Q9C0B1	505 aa	Known RBP eCLIP	11.52	□□□□□ -0.57
ZNF3-215	ENST00000487620	JCAD	Q9P266	1359 aa		11.51	□□□□□ -0.57
ZNF3-215	ENST00000487620	HEG1	Q9ULI3	1381 aa		11.51	□□□□□ -0.57
ZNF3-215	ENST00000487620	NEURL1B	A8MQ27	555 aa		11.51	□□□□□ -0.57
ZNF3-215	ENST00000487620	PPFIA3	O75145	1194 aa		11.51	□□□□□ -0.57
ZNF3-215	ENST00000487620	CYP21A2	P08686	494 aa		11.51	□□□□□ -0.57
ZNF3-215	ENST00000487620	SCRN1	Q12765	414 aa		11.51	□□□□□ -0.57
ZNF3-215	ENST00000487620	TFCP2	Q12800	502 aa		11.51	□□□□□ -0.57
ZNF3-215	ENST00000487620	PDIA6	Q15084	440 aa		11.51	□□□□□ -0.57
ZNF3-215	ENST00000487620	USPL1	Q5W0Q7	1092 aa		11.51	□□□□□ -0.57
ZNF3-215	ENST00000487620	C11orf57	Q6ZUT1	292 aa	Predicted RBP	11.51	□□□□□ -0.57
ZNF3-215	ENST00000487620	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	11.51	□□□□□ -0.57
ZNF3-215	ENST00000487620		A0A087WWV3	80 aa		11.51	□□□□□ -0.57
ZNF3-215	ENST00000487620	GCKR	Q14397	625 aa		11.51	□□□□□ -0.57
ZNF3-215	ENST00000487620	NAA30	Q147X3	362 aa	Predicted RBP	11.51	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms