RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 RGPD2P0DJD1 1756 aa14.45□□□□□ -0.1
COL3A1-206ENST00000487010 JCADQ9P266 1359 aa14.45□□□□□ -0.1
COL3A1-206ENST00000487010 KCNA6P17658 529 aa14.45□□□□□ -0.1
COL3A1-206ENST00000487010 PLEKHO1Q53GL0 409 aaPredicted RBP14.45□□□□□ -0.1
COL3A1-206ENST00000487010 LINS1Q8NG48 757 aa14.45□□□□□ -0.1
COL3A1-206ENST00000487010 BICC1Q9H694 974 aaKnown RBP14.45□□□□□ -0.1
COL3A1-206ENST00000487010 NFAT5O94916 1531 aa14.44□□□□□ -0.1
COL3A1-206ENST00000487010 RNMTO43148 476 aaKnown RBP14.44□□□□□ -0.1
COL3A1-206ENST00000487010 DRC7Q8IY82 874 aa14.44□□□□□ -0.1
COL3A1-206ENST00000487010 THEMISQ8N1K5 641 aaPredicted RBP14.44□□□□□ -0.1
COL3A1-206ENST00000487010 TRIM5Q9C035 493 aa14.44□□□□□ -0.1
COL3A1-206ENST00000487010 HEG1Q9ULI3 1381 aa14.44□□□□□ -0.1
COL3A1-206ENST00000487010 NR1I2O75469 434 aa14.43□□□□□ -0.1
COL3A1-206ENST00000487010 STK3Q13188 491 aa14.43□□□□□ -0.1
COL3A1-206ENST00000487010 PGBD1Q96JS3 809 aa14.43□□□□□ -0.1
COL3A1-206ENST00000487010 NRBP1Q9UHY1 535 aa14.43□□□□□ -0.1
COL3A1-206ENST00000487010 LRMPQ12912 555 aa14.43□□□□□ -0.1
COL3A1-206ENST00000487010 ZSCAN25Q6NSZ9 544 aa14.43□□□□□ -0.1
COL3A1-206ENST00000487010 ZNF589Q86UQ0 364 aaPredicted RBP14.43□□□□□ -0.1
COL3A1-206ENST00000487010 TAF5LO75529 589 aa14.42□□□□□ -0.1
COL3A1-206ENST00000487010 ZNF165P49910 485 aa14.42□□□□□ -0.1
COL3A1-206ENST00000487010 AMOTQ4VCS5 1084 aa14.42□□□□□ -0.1
COL3A1-206ENST00000487010 USPL1Q5W0Q7 1092 aa14.42□□□□□ -0.1
COL3A1-206ENST00000487010 BICD2Q8TD16 824 aa14.42□□□□□ -0.1
COL3A1-206ENST00000487010 PHF8Q9UPP1 1060 aa14.42□□□□□ -0.1
COL3A1-206ENST00000487010 NCAPD2Q15021 1401 aa14.42□□□□□ -0.1
COL3A1-206ENST00000487010 OVOS2A0A0G2JMS6 1433 aa14.42□□□□□ -0.1
COL3A1-206ENST00000487010 PRAMEF22A3QJZ6 481 aa14.42□□□□□ -0.1
COL3A1-206ENST00000487010 RESTQ13127 1097 aa14.42□□□□□ -0.1
COL3A1-206ENST00000487010 KRT32Q14532 448 aa14.42□□□□□ -0.1
COL3A1-206ENST00000487010 GTF3C6Q969F1 213 aa14.42□□□□□ -0.1
COL3A1-206ENST00000487010 LRRC59Q96AG4 307 aaKnown RBP14.42□□□□□ -0.1
COL3A1-206ENST00000487010 SMTNL1A8MU46 457 aa14.41□□□□□ -0.1
COL3A1-206ENST00000487010 JAK2O60674 1132 aa14.41□□□□□ -0.1
COL3A1-206ENST00000487010 DDX58O95786 925 aaKnown RBP14.41□□□□□ -0.1
COL3A1-206ENST00000487010 CAVIN2O95810 425 aa14.41□□□□□ -0.1
COL3A1-206ENST00000487010 C1orf141Q5JVX7 400 aa14.41□□□□□ -0.1
COL3A1-206ENST00000487010 SIL1Q9H173 461 aa14.41□□□□□ -0.1
COL3A1-206ENST00000487010 DNAJC25Q9H1X3 360 aa14.41□□□□□ -0.1
COL3A1-206ENST00000487010 MRC1P22897 1456 aa14.4□□□□□ -0.1
COL3A1-206ENST00000487010 CDC25BP30305 580 aa14.4□□□□□ -0.1
COL3A1-206ENST00000487010 SYCP1Q15431 976 aa14.4□□□□□ -0.1
COL3A1-206ENST00000487010 GTPBP4Q9BZE4 634 aaKnown RBP14.4□□□□□ -0.1
COL3A1-206ENST00000487010 PXDNQ92626 1479 aa14.4□□□□□ -0.1
COL3A1-206ENST00000487010 BRF1Q92994 677 aa14.4□□□□□ -0.1
COL3A1-206ENST00000487010 C16orf45Q96MC5 204 aaPredicted RBP14.4□□□□□ -0.1
COL3A1-206ENST00000487010 NEK1Q96PY6 1258 aa14.4□□□□□ -0.1
COL3A1-206ENST00000487010 ZSCAN16Q9H4T2 348 aaPredicted RBP14.4□□□□□ -0.1
COL3A1-206ENST00000487010 DDX21Q9NR30 783 aaKnown RBP eCLIP14.4□□□□□ -0.1
COL3A1-206ENST00000487010 CLIP2Q9UDT6 1046 aa14.4□□□□□ -0.1
COL3A1-206ENST00000487010 PHRF1Q9P1Y6 1649 aaKnown RBP14.4□□□□□ -0.1
COL3A1-206ENST00000487010 SPDYE4A6NLX3 237 aa14.39□□□□□ -0.11
COL3A1-206ENST00000487010 IGKV5-2P06315 115 aa14.39□□□□□ -0.11
COL3A1-206ENST00000487010 TNNT1P13805 278 aa14.39□□□□□ -0.11
COL3A1-206ENST00000487010 NCBP1Q09161 790 aaKnown RBP14.39□□□□□ -0.11
COL3A1-206ENST00000487010 AIMP1Q12904 312 aaKnown RBP14.39□□□□□ -0.11
COL3A1-206ENST00000487010 KCNH5Q8NCM2 988 aa14.39□□□□□ -0.11
COL3A1-206ENST00000487010 CACTINQ8WUQ7 758 aaKnown RBP14.39□□□□□ -0.11
COL3A1-206ENST00000487010 PAXBP1Q9Y5B6 917 aa14.39□□□□□ -0.11
COL3A1-206ENST00000487010 COL15A1P39059 1388 aa14.39□□□□□ -0.11
COL3A1-206ENST00000487010 U2AF2P26368 475 aaKnown RBP eCLIP14.38□□□□□ -0.11
COL3A1-206ENST00000487010 KLHDC4Q8TBB5 520 aa14.38□□□□□ -0.11
COL3A1-206ENST00000487010 EDC3Q96F86 508 aaKnown RBP14.38□□□□□ -0.11
COL3A1-206ENST00000487010 CFAP45Q9UL16 551 aa14.38□□□□□ -0.11
COL3A1-206ENST00000487010 SIPA1L3O60292 1781 aaPredicted RBP14.38□□□□□ -0.11
COL3A1-206ENST00000487010 H3BQV1 296 aa14.38□□□□□ -0.11
COL3A1-206ENST00000487010 IQCB1Q15051 598 aa14.38□□□□□ -0.11
COL3A1-206ENST00000487010 PDIA6Q15084 440 aa14.38□□□□□ -0.11
COL3A1-206ENST00000487010 CCDC144BQ3MJ40 725 aa14.38□□□□□ -0.11
COL3A1-206ENST00000487010 IFFO2Q5TF58 517 aa14.38□□□□□ -0.11
COL3A1-206ENST00000487010 SARM1Q6SZW1 724 aa14.38□□□□□ -0.11
COL3A1-206ENST00000487010 Q6ZUG5 572 aa14.38□□□□□ -0.11
COL3A1-206ENST00000487010 CCDC144CPQ8IYA2 1237 aa14.38□□□□□ -0.11
COL3A1-206ENST00000487010 ATP5JP18859 108 aa14.37□□□□□ -0.11
COL3A1-206ENST00000487010 DDX11Q96FC9 970 aa14.37□□□□□ -0.11
COL3A1-206ENST00000487010 FEZ1Q99689 392 aa14.37□□□□□ -0.11
COL3A1-206ENST00000487010 ZHX1Q9UKY1 873 aaPredicted RBP14.37□□□□□ -0.11
COL3A1-206ENST00000487010 MYH15Q9Y2K3 1946 aa14.37□□□□□ -0.11
COL3A1-206ENST00000487010 HSP90B1P14625 803 aaKnown RBP14.37□□□□□ -0.11
COL3A1-206ENST00000487010 TPD52L1Q16890 204 aaPredicted RBP14.37□□□□□ -0.11
COL3A1-206ENST00000487010 RIC3Q7Z5B4 369 aa14.37□□□□□ -0.11
COL3A1-206ENST00000487010 U3KPZ7 1027 aaPredicted RBP14.37□□□□□ -0.11
COL3A1-206ENST00000487010 NEURL1BA8MQ27 555 aa14.36□□□□□ -0.11
COL3A1-206ENST00000487010 GOLGA6L19H0YKK7 550 aa14.36□□□□□ -0.11
COL3A1-206ENST00000487010 CTAGE5O15320 804 aa14.36□□□□□ -0.11
COL3A1-206ENST00000487010 SMARCC2Q8TAQ2 1214 aa14.36□□□□□ -0.11
COL3A1-206ENST00000487010 RFX7Q2KHR2 1363 aa14.36□□□□□ -0.11
COL3A1-206ENST00000487010 ADD1P35611 737 aaKnown RBP14.35□□□□□ -0.11
COL3A1-206ENST00000487010 PSME1Q06323 249 aa14.35□□□□□ -0.11
COL3A1-206ENST00000487010 SCRN1Q12765 414 aa14.35□□□□□ -0.11
COL3A1-206ENST00000487010 EPHA10Q5JZY3 1008 aa14.35□□□□□ -0.11
COL3A1-206ENST00000487010 C11orf57Q6ZUT1 292 aaPredicted RBP14.35□□□□□ -0.11
COL3A1-206ENST00000487010 LRRC8AQ8IWT6 810 aa14.35□□□□□ -0.11
COL3A1-206ENST00000487010 CCDC112Q8NEF3 446 aa14.35□□□□□ -0.11
COL3A1-206ENST00000487010 MRFAP1L1Q96HT8 127 aa14.35□□□□□ -0.11
COL3A1-206ENST00000487010 LLPHQ9BRT6 129 aaKnown RBP14.35□□□□□ -0.11
COL3A1-206ENST00000487010 DBNLQ9UJU6 430 aaKnown RBP14.35□□□□□ -0.11
COL3A1-206ENST00000487010 RCOR1Q9UKL0 485 aa14.35□□□□□ -0.11
COL3A1-206ENST00000487010 ZNF609O15014 1411 aa14.35□□□□□ -0.11
COL3A1-206ENST00000487010 FER1L4A9Z1Z3 1794 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms