RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 ZBTB3Q9H5J0 574 aa11.33□□□□□ -0.6
COL12A1-208ENST00000486533 TIAM2Q8IVF5 1701 aa11.33□□□□□ -0.6
COL12A1-208ENST00000486533 ERBB4Q15303 1308 aa11.33□□□□□ -0.6
COL12A1-208ENST00000486533 ZC3H4Q9UPT8 1303 aaKnown RBP11.33□□□□□ -0.6
COL12A1-208ENST00000486533 TNRC6CQ9HCJ0 1690 aaKnown RBP11.33□□□□□ -0.6
COL12A1-208ENST00000486533 ERVV-1B6SEH8 477 aa11.33□□□□□ -0.6
COL12A1-208ENST00000486533 TOMM70O94826 608 aa11.33□□□□□ -0.6
COL12A1-208ENST00000486533 HSPA6P17066 643 aa11.33□□□□□ -0.6
COL12A1-208ENST00000486533 SCUBE2Q9NQ36 999 aa11.33□□□□□ -0.6
COL12A1-208ENST00000486533 BABAM1Q9NWV8 329 aa11.33□□□□□ -0.6
COL12A1-208ENST00000486533 LAS1LQ9Y4W2 734 aaKnown RBP11.33□□□□□ -0.6
COL12A1-208ENST00000486533 FER1L6Q2WGJ9 1857 aa11.32□□□□□ -0.6
COL12A1-208ENST00000486533 ARFGEF2Q9Y6D5 1785 aa11.32□□□□□ -0.6
COL12A1-208ENST00000486533 GPTP24298 496 aa11.32□□□□□ -0.6
COL12A1-208ENST00000486533 PRELPP51888 382 aa11.32□□□□□ -0.6
COL12A1-208ENST00000486533 C20orf194Q5TEA3 1177 aa11.32□□□□□ -0.6
COL12A1-208ENST00000486533 UPF2Q9HAU5 1272 aaKnown RBP11.32□□□□□ -0.6
COL12A1-208ENST00000486533 NPR1P16066 1061 aa11.31□□□□□ -0.6
COL12A1-208ENST00000486533 BECN1Q14457 450 aa11.31□□□□□ -0.6
COL12A1-208ENST00000486533 ZNF467Q7Z7K2 595 aaPredicted RBP11.31□□□□□ -0.6
COL12A1-208ENST00000486533 NUTM1Q86Y26 1132 aa11.31□□□□□ -0.6
COL12A1-208ENST00000486533 WWC1Q8IX03 1113 aa11.31□□□□□ -0.6
COL12A1-208ENST00000486533 NECTIN2Q92692 538 aa11.31□□□□□ -0.6
COL12A1-208ENST00000486533 CLUAP1Q96AJ1 413 aa11.31□□□□□ -0.6
COL12A1-208ENST00000486533 NYXQ9GZU5 481 aa11.31□□□□□ -0.6
COL12A1-208ENST00000486533 TAOK3Q9H2K8 898 aa11.31□□□□□ -0.6
COL12A1-208ENST00000486533 RRAGCQ9HB90 399 aa11.31□□□□□ -0.6
COL12A1-208ENST00000486533 ANXA1P04083 346 aa11.3□□□□□ -0.6
COL12A1-208ENST00000486533 ERFEQ4G0M1 354 aa11.3□□□□□ -0.6
COL12A1-208ENST00000486533 SOGA3Q5TF21 947 aa11.3□□□□□ -0.6
COL12A1-208ENST00000486533 KLRG2A4D1S0 409 aaPredicted RBP11.29□□□□□ -0.6
COL12A1-208ENST00000486533 GLTPD2A6NH11 291 aa11.29□□□□□ -0.6
COL12A1-208ENST00000486533 CHL1O00533 1208 aa11.29□□□□□ -0.6
COL12A1-208ENST00000486533 PROSER3Q2NL68 480 aa11.29□□□□□ -0.6
COL12A1-208ENST00000486533 DICER1Q9UPY3 1922 aaKnown RBP11.29□□□□□ -0.6
COL12A1-208ENST00000486533 ABCC12Q96J65 1359 aa11.29□□□□□ -0.6
COL12A1-208ENST00000486533 UBN2Q6ZU65 1347 aa11.29□□□□□ -0.6
COL12A1-208ENST00000486533 IRX5P78411 483 aaPredicted RBP11.28□□□□□ -0.6
COL12A1-208ENST00000486533 AIMP1Q12904 312 aaKnown RBP11.28□□□□□ -0.6
COL12A1-208ENST00000486533 PDIA6Q15084 440 aa11.28□□□□□ -0.6
COL12A1-208ENST00000486533 KRT24Q2M2I5 525 aa11.28□□□□□ -0.6
COL12A1-208ENST00000486533 CCDC93Q567U6 631 aa11.28□□□□□ -0.6
COL12A1-208ENST00000486533 DPY19L2Q6NUT2 758 aa11.28□□□□□ -0.6
COL12A1-208ENST00000486533 GIGYF2Q6Y7W6 1299 aaKnown RBP11.28□□□□□ -0.6
COL12A1-208ENST00000486533 RBM46Q8TBY0 533 aaKnown RBP11.28□□□□□ -0.6
COL12A1-208ENST00000486533 LTBP3Q9NS15 1303 aa11.28□□□□□ -0.6
COL12A1-208ENST00000486533 ALDH1B1P30837 517 aa11.28□□□□□ -0.6
COL12A1-208ENST00000486533 C8orf34Q49A92 452 aa11.28□□□□□ -0.6
COL12A1-208ENST00000486533 SUSD4Q5VX71 490 aa11.28□□□□□ -0.6
COL12A1-208ENST00000486533 RPGRQ92834 1020 aaKnown RBP11.28□□□□□ -0.6
COL12A1-208ENST00000486533 RWDD1Q9H446 243 aaPredicted RBP11.28□□□□□ -0.6
COL12A1-208ENST00000486533 VEGFAP15692 232 aaPredicted RBP11.27□□□□□ -0.61
COL12A1-208ENST00000486533 APLP1P51693 650 aa11.27□□□□□ -0.61
COL12A1-208ENST00000486533 OLFM4Q6UX06 510 aa11.27□□□□□ -0.61
COL12A1-208ENST00000486533 COPS6Q7L5N1 327 aa11.27□□□□□ -0.61
COL12A1-208ENST00000486533 LRP10Q7Z4F1 713 aa11.27□□□□□ -0.61
COL12A1-208ENST00000486533 PPP1R42Q7Z4L9 355 aa11.27□□□□□ -0.61
COL12A1-208ENST00000486533 ZNF34Q8IZ26 560 aa11.27□□□□□ -0.61
COL12A1-208ENST00000486533 XAGE3Q8WTP9 111 aa11.27□□□□□ -0.61
COL12A1-208ENST00000486533 C7orf43Q8WVR3 580 aa11.27□□□□□ -0.61
COL12A1-208ENST00000486533 IBTKQ9P2D0 1353 aaPredicted RBP11.27□□□□□ -0.61
COL12A1-208ENST00000486533 IL16Q14005 1332 aa11.26□□□□□ -0.61
COL12A1-208ENST00000486533 NTSR2O95665 410 aa11.26□□□□□ -0.61
COL12A1-208ENST00000486533 CRY2Q49AN0 593 aa11.26□□□□□ -0.61
COL12A1-208ENST00000486533 PARP10Q53GL7 1025 aa11.26□□□□□ -0.61
COL12A1-208ENST00000486533 HDGFL1Q5TGJ6 251 aa11.26□□□□□ -0.61
COL12A1-208ENST00000486533 CFAP44Q96MT7 982 aa11.26□□□□□ -0.61
COL12A1-208ENST00000486533 CHMP4BQ9H444 224 aaKnown RBP11.26□□□□□ -0.61
COL12A1-208ENST00000486533 DDX21Q9NR30 783 aaKnown RBP eCLIP11.26□□□□□ -0.61
COL12A1-208ENST00000486533 CHPF2Q9P2E5 772 aa11.26□□□□□ -0.61
COL12A1-208ENST00000486533 PCNTO95613 3336 aa11.26□□□□□ -0.61
COL12A1-208ENST00000486533 ANKRD36CQ5JPF3 1778 aa11.26□□□□□ -0.61
COL12A1-208ENST00000486533 RGS3P49796 1198 aa11.25□□□□□ -0.61
COL12A1-208ENST00000486533 FKBP4Q02790 459 aaKnown RBP eCLIP11.25□□□□□ -0.61
COL12A1-208ENST00000486533 FSTL1Q12841 308 aa11.25□□□□□ -0.61
COL12A1-208ENST00000486533 RTKN2Q8IZC4 609 aa11.25□□□□□ -0.61
COL12A1-208ENST00000486533 UTP14AQ9BVJ6 771 aaKnown RBP11.25□□□□□ -0.61
COL12A1-208ENST00000486533 ZNF277Q9NRM2 450 aaPredicted RBP11.25□□□□□ -0.61
COL12A1-208ENST00000486533 RIC1Q4ADV7 1423 aa11.25□□□□□ -0.61
COL12A1-208ENST00000486533 BCAR3O75815 825 aa11.24□□□□□ -0.61
COL12A1-208ENST00000486533 HOXB7P09629 217 aa11.24□□□□□ -0.61
COL12A1-208ENST00000486533 PLCG2P16885 1265 aa11.24□□□□□ -0.61
COL12A1-208ENST00000486533 RARSP54136 660 aaKnown RBP11.24□□□□□ -0.61
COL12A1-208ENST00000486533 CALD1Q05682 793 aaKnown RBP11.24□□□□□ -0.61
COL12A1-208ENST00000486533 HSP90AB3PQ58FF7 597 aa11.24□□□□□ -0.61
COL12A1-208ENST00000486533 SMC1BQ8NDV3 1235 aa11.24□□□□□ -0.61
COL12A1-208ENST00000486533 RBM17Q96I25 401 aaKnown RBP11.24□□□□□ -0.61
COL12A1-208ENST00000486533 MBIPQ9NS73 344 aa11.24□□□□□ -0.61
COL12A1-208ENST00000486533 WDR90Q96KV7 1748 aa11.24□□□□□ -0.61
COL12A1-208ENST00000486533 NLRP3Q96P20 1036 aa11.24□□□□□ -0.61
COL12A1-208ENST00000486533 DBF4Q9UBU7 674 aaPredicted RBP11.24□□□□□ -0.61
COL12A1-208ENST00000486533 EIF5BO60841 1220 aaKnown RBP11.23□□□□□ -0.61
COL12A1-208ENST00000486533 DDNO94850 711 aaPredicted RBP11.23□□□□□ -0.61
COL12A1-208ENST00000486533 GNAI1P63096 354 aa11.23□□□□□ -0.61
COL12A1-208ENST00000486533 ZKSCAN2Q63HK3 967 aa11.23□□□□□ -0.61
COL12A1-208ENST00000486533 C3orf67Q6ZVT6 689 aa11.23□□□□□ -0.61
COL12A1-208ENST00000486533 ZNF428Q96B54 188 aa11.23□□□□□ -0.61
COL12A1-208ENST00000486533 IFT57Q9NWB7 429 aa11.23□□□□□ -0.61
COL12A1-208ENST00000486533 CIZ1Q9ULV3 898 aaPredicted RBP11.23□□□□□ -0.61
COL12A1-208ENST00000486533 PPEF1O14829 653 aaPredicted RBP11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms