RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 ZNF417Q8TAU3 575 aa7.89□□□□□ -1.15
VPS41-213ENST00000485955 ZNF587Q96SQ5 575 aaPredicted RBP7.89□□□□□ -1.15
VPS41-213ENST00000485955 DNAJB12Q9NXW2 375 aaKnown RBP7.89□□□□□ -1.15
VPS41-213ENST00000485955 XYLBO75191 536 aa7.88□□□□□ -1.15
VPS41-213ENST00000485955 MAP3K6O95382 1288 aa7.88□□□□□ -1.15
VPS41-213ENST00000485955 EGFRP00533 1210 aa7.88□□□□□ -1.15
VPS41-213ENST00000485955 C11orf16Q9NQ32 467 aa7.88□□□□□ -1.15
VPS41-213ENST00000485955 SLC6A14Q9UN76 642 aa7.88□□□□□ -1.15
VPS41-213ENST00000485955 KRBA1A5PL33 1030 aa7.87□□□□□ -1.15
VPS41-213ENST00000485955 ZAP70P43403 619 aa7.87□□□□□ -1.15
VPS41-213ENST00000485955 TRIP4Q15650 581 aaPredicted RBP7.87□□□□□ -1.15
VPS41-213ENST00000485955 NAGPAQ9UK23 515 aa7.87□□□□□ -1.15
VPS41-213ENST00000485955 RARAP10276 462 aa7.86□□□□□ -1.15
VPS41-213ENST00000485955 DHX32Q7L7V1 743 aaKnown RBP7.86□□□□□ -1.15
VPS41-213ENST00000485955 ATCAYQ86WG3 371 aa7.86□□□□□ -1.15
VPS41-213ENST00000485955 GTF3C2Q8WUA4 911 aaPredicted RBP7.86□□□□□ -1.15
VPS41-213ENST00000485955 PLVAPQ9BX97 442 aa7.86□□□□□ -1.15
VPS41-213ENST00000485955 MLLT1Q03111 559 aaPredicted RBP7.85□□□□□ -1.15
VPS41-213ENST00000485955 MTMR3Q13615 1198 aa7.85□□□□□ -1.15
VPS41-213ENST00000485955 PLA2G4EQ3MJ16 856 aa7.85□□□□□ -1.15
VPS41-213ENST00000485955 GPR152Q8TDT2 470 aa7.85□□□□□ -1.15
VPS41-213ENST00000485955 PRDM6Q9NQX0 595 aa7.85□□□□□ -1.15
VPS41-213ENST00000485955 MMP20O60882 483 aa7.84□□□□□ -1.15
VPS41-213ENST00000485955 GPAT2Q6NUI2 795 aa7.84□□□□□ -1.15
VPS41-213ENST00000485955 FAM35AQ86V20 835 aa7.84□□□□□ -1.15
VPS41-213ENST00000485955 TRPM4Q8TD43 1214 aa7.84□□□□□ -1.15
VPS41-213ENST00000485955 HELQQ8TDG4 1101 aa7.84□□□□□ -1.15
VPS41-213ENST00000485955 NUDT8Q8WV74 236 aa7.84□□□□□ -1.15
VPS41-213ENST00000485955 PIK3R2O00459 728 aa7.83□□□□□ -1.16
VPS41-213ENST00000485955 NID1P14543 1247 aa7.83□□□□□ -1.16
VPS41-213ENST00000485955 CPB1P15086 417 aa7.83□□□□□ -1.16
VPS41-213ENST00000485955 PLAURQ03405 335 aa7.83□□□□□ -1.16
VPS41-213ENST00000485955 PSAPL1Q6NUJ1 521 aa7.83□□□□□ -1.16
VPS41-213ENST00000485955 HFE2Q6ZVN8 426 aa7.83□□□□□ -1.16
VPS41-213ENST00000485955 PIK3R5Q8WYR1 880 aa7.83□□□□□ -1.16
VPS41-213ENST00000485955 TLR7Q9NYK1 1049 aaKnown RBP7.83□□□□□ -1.16
VPS41-213ENST00000485955 UBAP1LF5GYI3 381 aa7.82□□□□□ -1.16
VPS41-213ENST00000485955 LILRB5O75023 590 aa7.82□□□□□ -1.16
VPS41-213ENST00000485955 PERM1Q5SV97 790 aa7.82□□□□□ -1.16
VPS41-213ENST00000485955 ABTB2Q8N961 1025 aa7.82□□□□□ -1.16
VPS41-213ENST00000485955 JPH1Q9HDC5 661 aaPredicted RBP7.82□□□□□ -1.16
VPS41-213ENST00000485955 USTQ9Y2C2 406 aa7.82□□□□□ -1.16
VPS41-213ENST00000485955 MPSTP25325 297 aa7.81□□□□□ -1.16
VPS41-213ENST00000485955 AFF1P51825 1210 aaKnown RBP7.81□□□□□ -1.16
VPS41-213ENST00000485955 NLRP13Q86W25 1043 aa7.81□□□□□ -1.16
VPS41-213ENST00000485955 RETREG2Q8NC44 543 aa7.81□□□□□ -1.16
VPS41-213ENST00000485955 LPIN3Q9BQK8 851 aa7.81□□□□□ -1.16
VPS41-213ENST00000485955 NOP53Q9NZM5 478 aaKnown RBP7.81□□□□□ -1.16
VPS41-213ENST00000485955 FAM229AH3BQW9 127 aa7.8□□□□□ -1.16
VPS41-213ENST00000485955 J3QW42 95 aa7.8□□□□□ -1.16
VPS41-213ENST00000485955 RGS9O75916 674 aaPredicted RBP7.8□□□□□ -1.16
VPS41-213ENST00000485955 NRLP54845 237 aa7.8□□□□□ -1.16
VPS41-213ENST00000485955 GPLD1P80108 840 aa7.8□□□□□ -1.16
VPS41-213ENST00000485955 PCSK7Q16549 785 aa7.8□□□□□ -1.16
VPS41-213ENST00000485955 ALYREFQ86V81 257 aaKnown RBP7.8□□□□□ -1.16
VPS41-213ENST00000485955 NUDT16Q96DE0 195 aaKnown RBP7.8□□□□□ -1.16
VPS41-213ENST00000485955 ANO2Q9NQ90 1003 aa7.8□□□□□ -1.16
VPS41-213ENST00000485955 FAM13BQ9NYF5 915 aa7.8□□□□□ -1.16
VPS41-213ENST00000485955 EIF1AXP47813 144 aaKnown RBP7.79□□□□□ -1.16
VPS41-213ENST00000485955 GRIK5Q16478 980 aa7.79□□□□□ -1.16
VPS41-213ENST00000485955 NOM1Q5C9Z4 860 aaKnown RBP7.79□□□□□ -1.16
VPS41-213ENST00000485955 ILDR2Q71H61 639 aa7.79□□□□□ -1.16
VPS41-213ENST00000485955 LOC102724428A0A0B4J2F2 783 aa7.78□□□□□ -1.16
VPS41-213ENST00000485955 C1QTNF9BB2RNN3 333 aa7.78□□□□□ -1.16
VPS41-213ENST00000485955 PROCP04070 461 aa7.78□□□□□ -1.16
VPS41-213ENST00000485955 PSAPP07602 524 aa7.78□□□□□ -1.16
VPS41-213ENST00000485955 NPR3P17342 541 aa7.78□□□□□ -1.16
VPS41-213ENST00000485955 CHRNA4P43681 627 aa7.78□□□□□ -1.16
VPS41-213ENST00000485955 SIK1P57059 783 aa7.78□□□□□ -1.16
VPS41-213ENST00000485955 DNM1Q05193 864 aaKnown RBP7.78□□□□□ -1.16
VPS41-213ENST00000485955 COL13A1Q5TAT6 717 aaPredicted RBP7.78□□□□□ -1.16
VPS41-213ENST00000485955 CD163Q86VB7 1156 aa7.78□□□□□ -1.16
VPS41-213ENST00000485955 EDEM1Q92611 657 aa7.78□□□□□ -1.16
VPS41-213ENST00000485955 NSUN5Q96P11 429 aaKnown RBP7.78□□□□□ -1.16
VPS41-213ENST00000485955 SPOCK3Q9BQ16 436 aa7.78□□□□□ -1.16
VPS41-213ENST00000485955 GGNBP2Q9H3C7 697 aa7.78□□□□□ -1.16
VPS41-213ENST00000485955 FNDC3AQ9Y2H6 1198 aaKnown RBP7.78□□□□□ -1.16
VPS41-213ENST00000485955 ABL1P00519 1130 aa7.77□□□□□ -1.17
VPS41-213ENST00000485955 TRAPPC3LQ5T215 181 aa7.77□□□□□ -1.17
VPS41-213ENST00000485955 ELMSAN1Q6PJG2 1045 aa7.77□□□□□ -1.17
VPS41-213ENST00000485955 OR13H1Q8NG92 308 aa7.77□□□□□ -1.17
VPS41-213ENST00000485955 SMG9Q9H0W8 520 aaKnown RBP7.77□□□□□ -1.17
VPS41-213ENST00000485955 TMEM63CQ9P1W3 806 aa7.77□□□□□ -1.17
VPS41-213ENST00000485955 LOC100996750A0A140TA64 210 aa7.76□□□□□ -1.17
VPS41-213ENST00000485955 A6NHS1 94 aa7.76□□□□□ -1.17
VPS41-213ENST00000485955 MSTNO14793 375 aa7.76□□□□□ -1.17
VPS41-213ENST00000485955 IGHA1P01876 353 aa7.76□□□□□ -1.17
VPS41-213ENST00000485955 PDGFAP04085 211 aa7.76□□□□□ -1.17
VPS41-213ENST00000485955 CYP2E1P05181 493 aaPredicted RBP7.76□□□□□ -1.17
VPS41-213ENST00000485955 SPATA31C1P0DKV0 1188 aa7.76□□□□□ -1.17
VPS41-213ENST00000485955 HOXD8P13378 290 aaPredicted RBP7.76□□□□□ -1.17
VPS41-213ENST00000485955 EIF2AK2P19525 551 aaKnown RBP7.76□□□□□ -1.17
VPS41-213ENST00000485955 ARID4AP29374 1257 aaPredicted RBP7.76□□□□□ -1.17
VPS41-213ENST00000485955 SOX18P35713 384 aa7.76□□□□□ -1.17
VPS41-213ENST00000485955 FKBP4Q02790 459 aaKnown RBP eCLIP7.76□□□□□ -1.17
VPS41-213ENST00000485955 ZNF211Q13398 564 aaPredicted RBP7.76□□□□□ -1.17
VPS41-213ENST00000485955 DMRTC2Q8IXT2 367 aaPredicted RBP7.76□□□□□ -1.17
VPS41-213ENST00000485955 KRTAP4-6Q9BYQ5 205 aa7.76□□□□□ -1.17
VPS41-213ENST00000485955 ELP3Q9H9T3 547 aa7.76□□□□□ -1.17
VPS41-213ENST00000485955 FRRS1LQ9P0K9 344 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 132.7 ms