RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 ELNP15502 786 aa7.14□□□□□ -1.27
VPS50-217ENST00000485140 SOX18P35713 384 aa7.14□□□□□ -1.27
VPS50-217ENST00000485140 GATA4P43694 442 aa7.14□□□□□ -1.27
VPS50-217ENST00000485140 BAG6P46379 1132 aa7.14□□□□□ -1.27
VPS50-217ENST00000485140 SRPK2P78362 688 aaKnown RBP7.14□□□□□ -1.27
VPS50-217ENST00000485140 FKBP5Q13451 457 aaPredicted RBP7.14□□□□□ -1.27
VPS50-217ENST00000485140 OCLNQ16625 522 aa7.14□□□□□ -1.27
VPS50-217ENST00000485140 TRAPPC3LQ5T215 181 aa7.14□□□□□ -1.27
VPS50-217ENST00000485140 JPH1Q9HDC5 661 aaPredicted RBP7.14□□□□□ -1.27
VPS50-217ENST00000485140 ZMIZ1Q9ULJ6 1067 aa7.14□□□□□ -1.27
VPS50-217ENST00000485140 STARD13Q9Y3M8 1113 aa7.14□□□□□ -1.27
VPS50-217ENST00000485140 C1QTNF9BB2RNN3 333 aa7.13□□□□□ -1.27
VPS50-217ENST00000485140 PSAPP07602 524 aa7.13□□□□□ -1.27
VPS50-217ENST00000485140 HOXD8P13378 290 aaPredicted RBP7.13□□□□□ -1.27
VPS50-217ENST00000485140 NID1P14543 1247 aa7.13□□□□□ -1.27
VPS50-217ENST00000485140 TBC1D8BQ0IIM8 1120 aa7.13□□□□□ -1.27
VPS50-217ENST00000485140 CDCA8Q53HL2 280 aa7.13□□□□□ -1.27
VPS50-217ENST00000485140 DHX32Q7L7V1 743 aaKnown RBP7.13□□□□□ -1.27
VPS50-217ENST00000485140 RAB44Q7Z6P3 723 aaPredicted RBP7.13□□□□□ -1.27
VPS50-217ENST00000485140 TREML1Q86YW5 311 aa7.13□□□□□ -1.27
VPS50-217ENST00000485140 RTCBQ9Y3I0 505 aaKnown RBP7.13□□□□□ -1.27
VPS50-217ENST00000485140 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.12□□□□□ -1.27
VPS50-217ENST00000485140 PRMT3O60678 531 aa7.12□□□□□ -1.27
VPS50-217ENST00000485140 ADAM23O75077 832 aa7.12□□□□□ -1.27
VPS50-217ENST00000485140 XYLBO75191 536 aa7.12□□□□□ -1.27
VPS50-217ENST00000485140 PLAURQ03405 335 aa7.12□□□□□ -1.27
VPS50-217ENST00000485140 FAM69CQ0P6D2 419 aa7.12□□□□□ -1.27
VPS50-217ENST00000485140 COX20Q5RI15 118 aa7.12□□□□□ -1.27
VPS50-217ENST00000485140 PSAPL1Q6NUJ1 521 aa7.12□□□□□ -1.27
VPS50-217ENST00000485140 FAM35AQ86V20 835 aa7.12□□□□□ -1.27
VPS50-217ENST00000485140 CD163Q86VB7 1156 aa7.12□□□□□ -1.27
VPS50-217ENST00000485140 MAP4K3Q8IVH8 894 aa7.12□□□□□ -1.27
VPS50-217ENST00000485140 IGFLR1Q9H665 355 aa7.12□□□□□ -1.27
VPS50-217ENST00000485140 TLR7Q9NYK1 1049 aaKnown RBP7.12□□□□□ -1.27
VPS50-217ENST00000485140 ITGB2P05107 769 aa7.11□□□□□ -1.27
VPS50-217ENST00000485140 PCSK2P16519 638 aa7.11□□□□□ -1.27
VPS50-217ENST00000485140 ELMSAN1Q6PJG2 1045 aa7.11□□□□□ -1.27
VPS50-217ENST00000485140 PRIMPOLQ96LW4 560 aa7.11□□□□□ -1.27
VPS50-217ENST00000485140 MUC3BQ9H195 1237 aa7.11□□□□□ -1.27
VPS50-217ENST00000485140 GHRHP01286 108 aa7.1□□□□□ -1.27
VPS50-217ENST00000485140 TMEM164Q5U3C3 297 aa7.1□□□□□ -1.27
VPS50-217ENST00000485140 B4GALNT3Q6L9W6 998 aa7.1□□□□□ -1.27
VPS50-217ENST00000485140 NLRP13Q86W25 1043 aa7.1□□□□□ -1.27
VPS50-217ENST00000485140 STK32AQ8WU08 396 aa7.1□□□□□ -1.27
VPS50-217ENST00000485140 STIM2Q9P246 746 aa7.1□□□□□ -1.27
VPS50-217ENST00000485140 ATP2B4P23634 1241 aa7.09□□□□□ -1.27
VPS50-217ENST00000485140 WFDC8Q8IUA0 241 aa7.09□□□□□ -1.27
VPS50-217ENST00000485140 RGL4Q8IZJ4 473 aa7.09□□□□□ -1.27
VPS50-217ENST00000485140 CMTR1Q8N1G2 835 aaKnown RBP7.09□□□□□ -1.27
VPS50-217ENST00000485140 LRFN2Q9ULH4 789 aa7.09□□□□□ -1.27
VPS50-217ENST00000485140 A0A0A0MRY4 1105 aa7.08□□□□□ -1.28
VPS50-217ENST00000485140 OPLAHO14841 1288 aa7.08□□□□□ -1.28
VPS50-217ENST00000485140 LGR5O75473 907 aa7.08□□□□□ -1.28
VPS50-217ENST00000485140 CHRNA4P43681 627 aa7.08□□□□□ -1.28
VPS50-217ENST00000485140 AFF1P51825 1210 aaKnown RBP7.08□□□□□ -1.28
VPS50-217ENST00000485140 PDE4CQ08493 712 aa7.08□□□□□ -1.28
VPS50-217ENST00000485140 COL9A3Q14050 684 aaPredicted RBP7.08□□□□□ -1.28
VPS50-217ENST00000485140 TTC16Q8NEE8 873 aa7.08□□□□□ -1.28
VPS50-217ENST00000485140 LENG1Q96BZ8 264 aaPredicted RBP7.08□□□□□ -1.28
VPS50-217ENST00000485140 FAM177BA6PVY3 158 aa7.07□□□□□ -1.28
VPS50-217ENST00000485140 SASH3O75995 380 aa7.07□□□□□ -1.28
VPS50-217ENST00000485140 MSL1Q68DK7 614 aa7.07□□□□□ -1.28
VPS50-217ENST00000485140 ALKBH2Q6NS38 261 aa7.07□□□□□ -1.28
VPS50-217ENST00000485140 NUDT8Q8WV74 236 aa7.07□□□□□ -1.28
VPS50-217ENST00000485140 SPACA7Q96KW9 195 aa7.07□□□□□ -1.28
VPS50-217ENST00000485140 UBAP1LF5GYI3 381 aa7.06□□□□□ -1.28
VPS50-217ENST00000485140 CPB1P15086 417 aa7.06□□□□□ -1.28
VPS50-217ENST00000485140 EIF2AK2P19525 551 aaKnown RBP7.06□□□□□ -1.28
VPS50-217ENST00000485140 TARSP26639 723 aaKnown RBP7.06□□□□□ -1.28
VPS50-217ENST00000485140 PDE12Q6L8Q7 609 aaKnown RBP7.06□□□□□ -1.28
VPS50-217ENST00000485140 KRT25Q7Z3Z0 450 aa7.06□□□□□ -1.28
VPS50-217ENST00000485140 LPIN3Q9BQK8 851 aa7.06□□□□□ -1.28
VPS50-217ENST00000485140 LOC102724428A0A0B4J2F2 783 aa7.05□□□□□ -1.28
VPS50-217ENST00000485140 ZAP70P43403 619 aa7.05□□□□□ -1.28
VPS50-217ENST00000485140 SIK1P57059 783 aa7.05□□□□□ -1.28
VPS50-217ENST00000485140 HYAL2Q12891 473 aa7.05□□□□□ -1.28
VPS50-217ENST00000485140 TTC39BQ5VTQ0 682 aaPredicted RBP7.05□□□□□ -1.28
VPS50-217ENST00000485140 TXNRD3Q86VQ6 643 aa7.05□□□□□ -1.28
VPS50-217ENST00000485140 FMR1NBQ8N0W7 255 aaPredicted RBP7.05□□□□□ -1.28
VPS50-217ENST00000485140 PMEPA1Q969W9 287 aa7.05□□□□□ -1.28
VPS50-217ENST00000485140 ZFATQ9P243 1243 aa7.05□□□□□ -1.28
VPS50-217ENST00000485140 KCNMB2Q9Y691 235 aa7.05□□□□□ -1.28
VPS50-217ENST00000485140 EIF4EBP3O60516 100 aaPredicted RBP7.04□□□□□ -1.28
VPS50-217ENST00000485140 ADGRE1Q14246 886 aa7.04□□□□□ -1.28
VPS50-217ENST00000485140 PERM1Q5SV97 790 aa7.04□□□□□ -1.28
VPS50-217ENST00000485140 IGF2-ASQ6U949 168 aa7.04□□□□□ -1.28
VPS50-217ENST00000485140 FBXO11Q86XK2 927 aa7.04□□□□□ -1.28
VPS50-217ENST00000485140 ETFBKMTQ8IXQ9 262 aa7.04□□□□□ -1.28
VPS50-217ENST00000485140 HELQQ8TDG4 1101 aa7.04□□□□□ -1.28
VPS50-217ENST00000485140 PSMG3-AS1Q96PY0 264 aa7.04□□□□□ -1.28
VPS50-217ENST00000485140 NAGPAQ9UK23 515 aa7.04□□□□□ -1.28
VPS50-217ENST00000485140 TNFRSF10BO14763 440 aa7.03□□□□□ -1.28
VPS50-217ENST00000485140 H2AFB1P0C5Y9 115 aa7.03□□□□□ -1.28
VPS50-217ENST00000485140 H2AFB2P0C5Z0 115 aa7.03□□□□□ -1.28
VPS50-217ENST00000485140 GRNP28799 593 aaKnown RBP7.03□□□□□ -1.28
VPS50-217ENST00000485140 C8orf86Q6ZUL3 223 aa7.03□□□□□ -1.28
VPS50-217ENST00000485140 C14orf37Q86TY3 774 aa7.03□□□□□ -1.28
VPS50-217ENST00000485140 OR13H1Q8NG92 308 aa7.03□□□□□ -1.28
VPS50-217ENST00000485140 PLD4Q96BZ4 506 aa7.03□□□□□ -1.28
VPS50-217ENST00000485140 MKNK1Q9BUB5 465 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms