RNA–Protein interactions for RNA: ENST00000484203.5

PTCD3-215, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 928 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-215ENST00000484203 ANKRD26Q9UPS8 1709 aa8.22□□□□□ -1.09
PTCD3-215ENST00000484203 CNTNAP4Q9C0A0 1308 aa8.22□□□□□ -1.09
PTCD3-215ENST00000484203 KAT6BQ8WYB5 2073 aa8.22□□□□□ -1.09
PTCD3-215ENST00000484203 RPS6KA4O75676 772 aa8.21□□□□□ -1.1
PTCD3-215ENST00000484203 HMOX1P09601 288 aa8.21□□□□□ -1.1
PTCD3-215ENST00000484203 FDX1P10109 184 aa8.21□□□□□ -1.1
PTCD3-215ENST00000484203 RFC4P35249 363 aa8.21□□□□□ -1.1
PTCD3-215ENST00000484203 MYSM1Q5VVJ2 828 aa8.21□□□□□ -1.1
PTCD3-215ENST00000484203 RIC3Q7Z5B4 369 aa8.21□□□□□ -1.1
PTCD3-215ENST00000484203 LINC00116Q8NCU8 138 aa8.21□□□□□ -1.1
PTCD3-215ENST00000484203 TEX13AQ9BXU3 409 aaPredicted RBP8.21□□□□□ -1.1
PTCD3-215ENST00000484203 IRX2Q9BZI1 471 aaPredicted RBP8.21□□□□□ -1.1
PTCD3-215ENST00000484203 PNNQ9H307 717 aaKnown RBP8.21□□□□□ -1.1
PTCD3-215ENST00000484203 BTAF1O14981 1849 aa8.21□□□□□ -1.1
PTCD3-215ENST00000484203 GNAT3A8MTJ3 354 aa8.2□□□□□ -1.1
PTCD3-215ENST00000484203 RNMTO43148 476 aaKnown RBP8.2□□□□□ -1.1
PTCD3-215ENST00000484203 PTCD1O75127 700 aaKnown RBP8.2□□□□□ -1.1
PTCD3-215ENST00000484203 TEFQ10587 303 aa8.2□□□□□ -1.1
PTCD3-215ENST00000484203 ITPK1Q13572 414 aa8.2□□□□□ -1.1
PTCD3-215ENST00000484203 Q3C1V9 767 aa8.2□□□□□ -1.1
PTCD3-215ENST00000484203 TTC5Q8N0Z6 440 aa8.2□□□□□ -1.1
PTCD3-215ENST00000484203 POLR3EQ9NVU0 708 aa8.2□□□□□ -1.1
PTCD3-215ENST00000484203 CASZ1Q86V15 1759 aa8.2□□□□□ -1.1
PTCD3-215ENST00000484203 TLL1O43897 1013 aa8.19□□□□□ -1.1
PTCD3-215ENST00000484203 FMNL1O95466 1100 aaPredicted RBP8.19□□□□□ -1.1
PTCD3-215ENST00000484203 STARD3NLO95772 234 aa8.19□□□□□ -1.1
PTCD3-215ENST00000484203 MTHFSDQ2M296 383 aaKnown RBP8.19□□□□□ -1.1
PTCD3-215ENST00000484203 RSBN1LQ6PCB5 846 aaPredicted RBP8.19□□□□□ -1.1
PTCD3-215ENST00000484203 NKX2-3Q8TAU0 364 aa8.19□□□□□ -1.1
PTCD3-215ENST00000484203 RTF1Q92541 710 aaKnown RBP8.19□□□□□ -1.1
PTCD3-215ENST00000484203 PKD1L3Q7Z443 1732 aa8.19□□□□□ -1.1
PTCD3-215ENST00000484203 KDM6AO15550 1401 aaPredicted RBP8.19□□□□□ -1.1
PTCD3-215ENST00000484203 HTATSF1O43719 755 aaKnown RBP8.18□□□□□ -1.1
PTCD3-215ENST00000484203 U2AF1L5P0DN76 240 aaPredicted RBP8.18□□□□□ -1.1
PTCD3-215ENST00000484203 PPP2R1AP30153 589 aa8.18□□□□□ -1.1
PTCD3-215ENST00000484203 CRKLP46109 303 aaKnown RBP8.18□□□□□ -1.1
PTCD3-215ENST00000484203 U2AF1Q01081 240 aaKnown RBP eCLIP8.18□□□□□ -1.1
PTCD3-215ENST00000484203 RALBP1Q15311 655 aa8.18□□□□□ -1.1
PTCD3-215ENST00000484203 MSL1Q68DK7 614 aa8.18□□□□□ -1.1
PTCD3-215ENST00000484203 RNF19BQ6ZMZ0 732 aa8.18□□□□□ -1.1
PTCD3-215ENST00000484203 NPM2Q86SE8 214 aaKnown RBP8.18□□□□□ -1.1
PTCD3-215ENST00000484203 SPSB2Q99619 263 aa8.18□□□□□ -1.1
PTCD3-215ENST00000484203 PCDHGC3Q9UN70 934 aa8.18□□□□□ -1.1
PTCD3-215ENST00000484203 DOT1LQ8TEK3 1739 aa8.17□□□□□ -1.1
PTCD3-215ENST00000484203 A0A087WZG4 1122 aa8.17□□□□□ -1.1
PTCD3-215ENST00000484203 SPTLC1O15269 473 aa8.17□□□□□ -1.1
PTCD3-215ENST00000484203 MMP10P09238 476 aa8.17□□□□□ -1.1
PTCD3-215ENST00000484203 CLK2P49760 499 aaKnown RBP8.17□□□□□ -1.1
PTCD3-215ENST00000484203 TGFB2P61812 414 aa8.17□□□□□ -1.1
PTCD3-215ENST00000484203 SKIV2LQ15477 1246 aaKnown RBP8.17□□□□□ -1.1
PTCD3-215ENST00000484203 CSPP1Q1MSJ5 1256 aa8.17□□□□□ -1.1
PTCD3-215ENST00000484203 SH3D19Q5HYK7 790 aa8.17□□□□□ -1.1
PTCD3-215ENST00000484203 SLC4A9Q96Q91 983 aa8.17□□□□□ -1.1
PTCD3-215ENST00000484203 LGR6Q9HBX8 967 aa8.17□□□□□ -1.1
PTCD3-215ENST00000484203 CCDC87Q9NVE4 849 aa8.17□□□□□ -1.1
PTCD3-215ENST00000484203 LIMD1Q9UGP4 676 aa8.17□□□□□ -1.1
PTCD3-215ENST00000484203 SALL2Q9Y467 1007 aaPredicted RBP8.17□□□□□ -1.1
PTCD3-215ENST00000484203 PARP3Q9Y6F1 533 aa8.17□□□□□ -1.1
PTCD3-215ENST00000484203 C6orf229H3BNL8 230 aa8.16□□□□□ -1.1
PTCD3-215ENST00000484203 ADH1BP00325 375 aa8.16□□□□□ -1.1
PTCD3-215ENST00000484203 PRKAR2BP31323 418 aa8.16□□□□□ -1.1
PTCD3-215ENST00000484203 GJA5P36382 358 aa8.16□□□□□ -1.1
PTCD3-215ENST00000484203 CNGB1Q14028 1251 aaPredicted RBP8.16□□□□□ -1.1
PTCD3-215ENST00000484203 ZNF790Q6PG37 636 aa8.16□□□□□ -1.1
PTCD3-215ENST00000484203 BRICD5Q6PL45 260 aa8.16□□□□□ -1.1
PTCD3-215ENST00000484203 SYMPKQ92797 1274 aaKnown RBP8.16□□□□□ -1.1
PTCD3-215ENST00000484203 THAP11Q96EK4 314 aa8.16□□□□□ -1.1
PTCD3-215ENST00000484203 PCDHB15Q9Y5E8 787 aa8.16□□□□□ -1.1
PTCD3-215ENST00000484203 MAP2P11137 1827 aaKnown RBP8.15□□□□□ -1.1
PTCD3-215ENST00000484203 LY75O60449 1722 aa8.15□□□□□ -1.1
PTCD3-215ENST00000484203 SHANK3Q9BYB0 1731 aa8.15□□□□□ -1.1
PTCD3-215ENST00000484203 CYP19A1P11511 503 aaPredicted RBP8.15□□□□□ -1.1
PTCD3-215ENST00000484203 GYS1P13807 737 aa8.15□□□□□ -1.1
PTCD3-215ENST00000484203 NLGN2Q8NFZ4 835 aa8.15□□□□□ -1.1
PTCD3-215ENST00000484203 PNISRQ8TF01 805 aaKnown RBP8.15□□□□□ -1.1
PTCD3-215ENST00000484203 FMNL2Q96PY5 1086 aa8.15□□□□□ -1.1
PTCD3-215ENST00000484203 UTRNP46939 3433 aa8.15□□□□□ -1.11
PTCD3-215ENST00000484203 CEMIPQ8WUJ3 1361 aa8.14□□□□□ -1.11
PTCD3-215ENST00000484203 USP42Q9H9J4 1324 aaKnown RBP8.14□□□□□ -1.11
PTCD3-215ENST00000484203 BTBD11A6QL63 1104 aa8.14□□□□□ -1.11
PTCD3-215ENST00000484203 ZEB1P37275 1124 aaPredicted RBP8.14□□□□□ -1.11
PTCD3-215ENST00000484203 MTMR2Q13614 643 aa8.14□□□□□ -1.11
PTCD3-215ENST00000484203 INTS5Q6P9B9 1019 aaKnown RBP8.14□□□□□ -1.11
PTCD3-215ENST00000484203 AMIGO3Q86WK7 504 aa8.14□□□□□ -1.11
PTCD3-215ENST00000484203 DNAJC10Q8IXB1 793 aa8.14□□□□□ -1.11
PTCD3-215ENST00000484203 IL17REQ8NFR9 667 aa8.14□□□□□ -1.11
PTCD3-215ENST00000484203 USB1Q9BQ65 265 aaKnown RBP8.14□□□□□ -1.11
PTCD3-215ENST00000484203 RGPD2P0DJD1 1756 aa8.14□□□□□ -1.11
PTCD3-215ENST00000484203 COL3A1P02461 1466 aaPredicted RBP8.13□□□□□ -1.11
PTCD3-215ENST00000484203 MRC1P22897 1456 aa8.13□□□□□ -1.11
PTCD3-215ENST00000484203 SOS1Q07889 1333 aaPredicted RBP8.13□□□□□ -1.11
PTCD3-215ENST00000484203 C4BP0C0L5 1744 aa8.13□□□□□ -1.11
PTCD3-215ENST00000484203 QSER1Q2KHR3 1735 aa8.13□□□□□ -1.11
PTCD3-215ENST00000484203 SLC39A6Q13433 755 aa8.13□□□□□ -1.11
PTCD3-215ENST00000484203 ZNF784Q8NCA9 323 aaPredicted RBP8.13□□□□□ -1.11
PTCD3-215ENST00000484203 PROCA1Q8NCQ7 364 aaPredicted RBP8.13□□□□□ -1.11
PTCD3-215ENST00000484203 PHACTR3Q96KR7 559 aa8.13□□□□□ -1.11
PTCD3-215ENST00000484203 SLC6A16Q9GZN6 736 aa8.13□□□□□ -1.11
PTCD3-215ENST00000484203 ZBTB3Q9H5J0 574 aa8.13□□□□□ -1.11
PTCD3-215ENST00000484203 GOPCQ9HD26 462 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms