RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 IDH3AP50213 366 aa6.06□□□□□ -1.44
VPS41-212ENST00000482217 CTBSQ01459 385 aa6.06□□□□□ -1.44
VPS41-212ENST00000482217 TYRO3Q06418 890 aa6.06□□□□□ -1.44
VPS41-212ENST00000482217 PDE3BQ13370 1112 aa6.06□□□□□ -1.44
VPS41-212ENST00000482217 ATCAYQ86WG3 371 aa6.06□□□□□ -1.44
VPS41-212ENST00000482217 RGL4Q8IZJ4 473 aa6.06□□□□□ -1.44
VPS41-212ENST00000482217 PIK3R5Q8WYR1 880 aa6.06□□□□□ -1.44
VPS41-212ENST00000482217 CCDC87Q9NVE4 849 aa6.06□□□□□ -1.44
VPS41-212ENST00000482217 MARK1Q9P0L2 795 aa6.06□□□□□ -1.44
VPS41-212ENST00000482217 C2CD2LO14523 706 aa6.05□□□□□ -1.44
VPS41-212ENST00000482217 OPLAHO14841 1288 aa6.05□□□□□ -1.44
VPS41-212ENST00000482217 PDGFAP04085 211 aa6.05□□□□□ -1.44
VPS41-212ENST00000482217 DNM1Q05193 864 aaKnown RBP6.05□□□□□ -1.44
VPS41-212ENST00000482217 EHHADHQ08426 723 aa6.05□□□□□ -1.44
VPS41-212ENST00000482217 PODNQ7Z5L7 613 aa6.05□□□□□ -1.44
VPS41-212ENST00000482217 GJD3Q8N144 294 aa6.05□□□□□ -1.44
VPS41-212ENST00000482217 NEDD1Q8NHV4 660 aa6.05□□□□□ -1.44
VPS41-212ENST00000482217 EDEM1Q92611 657 aa6.05□□□□□ -1.44
VPS41-212ENST00000482217 DMRTB1Q96MA1 342 aa6.05□□□□□ -1.44
VPS41-212ENST00000482217 CEP63Q96MT8 703 aa6.05□□□□□ -1.44
VPS41-212ENST00000482217 POLIQ9UNA4 740 aa6.05□□□□□ -1.44
VPS41-212ENST00000482217 AMOTL2Q9Y2J4 779 aa6.05□□□□□ -1.44
VPS41-212ENST00000482217 ANKRD33BA6NCL7 494 aa6.04□□□□□ -1.44
VPS41-212ENST00000482217 PHF20L1A8MW92 1017 aa6.04□□□□□ -1.44
VPS41-212ENST00000482217 ADH6P28332 368 aa6.04□□□□□ -1.44
VPS41-212ENST00000482217 KCNQ4P56696 695 aa6.04□□□□□ -1.44
VPS41-212ENST00000482217 COL19A1Q14993 1142 aa6.04□□□□□ -1.44
VPS41-212ENST00000482217 ZNF468Q5VIY5 522 aaPredicted RBP6.04□□□□□ -1.44
VPS41-212ENST00000482217 KANK3Q6NY19 840 aa6.04□□□□□ -1.44
VPS41-212ENST00000482217 BEND7Q8N7W2 519 aaPredicted RBP6.04□□□□□ -1.44
VPS41-212ENST00000482217 GPR152Q8TDT2 470 aa6.04□□□□□ -1.44
VPS41-212ENST00000482217 FAM129BQ96TA1 746 aa6.04□□□□□ -1.44
VPS41-212ENST00000482217 FNDC3AQ9Y2H6 1198 aaKnown RBP6.04□□□□□ -1.44
VPS41-212ENST00000482217 PPM1GO15355 546 aaPredicted RBP6.03□□□□□ -1.44
VPS41-212ENST00000482217 CD33P20138 364 aa6.03□□□□□ -1.44
VPS41-212ENST00000482217 TMC7Q7Z402 723 aa6.03□□□□□ -1.44
VPS41-212ENST00000482217 GALNT6Q8NCL4 622 aa6.03□□□□□ -1.44
VPS41-212ENST00000482217 TTC16Q8NEE8 873 aa6.03□□□□□ -1.44
VPS41-212ENST00000482217 EDARADDQ8WWZ3 215 aa6.03□□□□□ -1.44
VPS41-212ENST00000482217 ALKBH8Q96BT7 664 aaKnown RBP6.03□□□□□ -1.44
VPS41-212ENST00000482217 NUDT16Q96DE0 195 aaKnown RBP6.03□□□□□ -1.44
VPS41-212ENST00000482217 BRD7Q9NPI1 651 aa6.03□□□□□ -1.44
VPS41-212ENST00000482217 GGA1Q9UJY5 639 aa6.03□□□□□ -1.44
VPS41-212ENST00000482217 PRR12Q9ULL5 1215 aa6.03□□□□□ -1.44
VPS41-212ENST00000482217 RTCBQ9Y3I0 505 aaKnown RBP6.03□□□□□ -1.44
VPS41-212ENST00000482217 PIK3R2O00459 728 aa6.02□□□□□ -1.45
VPS41-212ENST00000482217 TREHO43280 583 aa6.02□□□□□ -1.45
VPS41-212ENST00000482217 EPXP11678 715 aa6.02□□□□□ -1.45
VPS41-212ENST00000482217 NEUROD1Q13562 356 aa6.02□□□□□ -1.45
VPS41-212ENST00000482217 CERS3Q8IU89 383 aa6.02□□□□□ -1.45
VPS41-212ENST00000482217 NPAS4Q8IUM7 802 aa6.02□□□□□ -1.45
VPS41-212ENST00000482217 TMC1Q8TDI8 760 aa6.02□□□□□ -1.45
VPS41-212ENST00000482217 EFCC1Q9HA90 598 aa6.02□□□□□ -1.45
VPS41-212ENST00000482217 EGFRP00533 1210 aa6.01□□□□□ -1.45
VPS41-212ENST00000482217 IGHA2P01877 340 aa6.01□□□□□ -1.45
VPS41-212ENST00000482217 NEFLP07196 543 aa6.01□□□□□ -1.45
VPS41-212ENST00000482217 IRX6P78412 446 aaPredicted RBP6.01□□□□□ -1.45
VPS41-212ENST00000482217 PDE12Q6L8Q7 609 aaKnown RBP6.01□□□□□ -1.45
VPS41-212ENST00000482217 TMED8Q6PL24 325 aaPredicted RBP6.01□□□□□ -1.45
VPS41-212ENST00000482217 XKR5Q6UX68 686 aa6.01□□□□□ -1.45
VPS41-212ENST00000482217 CMTR1Q8N1G2 835 aaKnown RBP6.01□□□□□ -1.45
VPS41-212ENST00000482217 HCN2Q9UL51 889 aa6.01□□□□□ -1.45
VPS41-212ENST00000482217 KCNH4Q9UQ05 1017 aa6.01□□□□□ -1.45
VPS41-212ENST00000482217 KCNMB2Q9Y691 235 aa6.01□□□□□ -1.45
VPS41-212ENST00000482217 NEURL1BA8MQ27 555 aa6□□□□□ -1.45
VPS41-212ENST00000482217 SHISA8B8ZZ34 492 aa6□□□□□ -1.45
VPS41-212ENST00000482217 UBAP1LF5GYI3 381 aa6□□□□□ -1.45
VPS41-212ENST00000482217 SIN3BO75182 1162 aa6□□□□□ -1.45
VPS41-212ENST00000482217 GRNP28799 593 aaKnown RBP6□□□□□ -1.45
VPS41-212ENST00000482217 GSK3AP49840 483 aa6□□□□□ -1.45
VPS41-212ENST00000482217 PLCB3Q01970 1234 aa6□□□□□ -1.45
VPS41-212ENST00000482217 RASSF7Q02833 373 aa6□□□□□ -1.45
VPS41-212ENST00000482217 FMR1Q06787 632 aaKnown RBP eCLIP6□□□□□ -1.45
VPS41-212ENST00000482217 DSC3Q14574 896 aa6□□□□□ -1.45
VPS41-212ENST00000482217 C8orf34Q49A92 452 aa6□□□□□ -1.45
VPS41-212ENST00000482217 C1orf229Q6ZS94 237 aaPredicted RBP6□□□□□ -1.45
VPS41-212ENST00000482217 TMEM151AQ8N4L1 468 aa6□□□□□ -1.45
VPS41-212ENST00000482217 GGNBP2Q9H3C7 697 aa6□□□□□ -1.45
VPS41-212ENST00000482217 STRN4Q9NRL3 753 aa6□□□□□ -1.45
VPS41-212ENST00000482217 GPR182O15218 404 aa5.99□□□□□ -1.45
VPS41-212ENST00000482217 XYLBO75191 536 aa5.99□□□□□ -1.45
VPS41-212ENST00000482217 GDF11O95390 407 aa5.99□□□□□ -1.45
VPS41-212ENST00000482217 AMPD1P23109 780 aa5.99□□□□□ -1.45
VPS41-212ENST00000482217 ALYREFQ86V81 257 aaKnown RBP5.99□□□□□ -1.45
VPS41-212ENST00000482217 MKL2Q9ULH7 1088 aa5.99□□□□□ -1.45
VPS41-212ENST00000482217 USP20Q9Y2K6 914 aa5.99□□□□□ -1.45
VPS41-212ENST00000482217 RBM47A0AV96 593 aaKnown RBP5.98□□□□□ -1.45
VPS41-212ENST00000482217 UNCXA6NJT0 531 aa5.98□□□□□ -1.45
VPS41-212ENST00000482217 IRS1P35568 1242 aa5.98□□□□□ -1.45
VPS41-212ENST00000482217 FGD1P98174 961 aa5.98□□□□□ -1.45
VPS41-212ENST00000482217 SPEM2Q0P670 501 aa5.98□□□□□ -1.45
VPS41-212ENST00000482217 SFSWAPQ12872 951 aaKnown RBP5.98□□□□□ -1.45
VPS41-212ENST00000482217 CCINQ13939 588 aa5.98□□□□□ -1.45
VPS41-212ENST00000482217 TRIP4Q15650 581 aaPredicted RBP5.98□□□□□ -1.45
VPS41-212ENST00000482217 ZNF438Q7Z4V0 828 aa5.98□□□□□ -1.45
VPS41-212ENST00000482217 SYT9Q86SS6 491 aa5.98□□□□□ -1.45
VPS41-212ENST00000482217 NLRP13Q86W25 1043 aa5.98□□□□□ -1.45
VPS41-212ENST00000482217 TICAM2Q86XR7 235 aa5.98□□□□□ -1.45
VPS41-212ENST00000482217 BTBD6Q96KE9 485 aa5.98□□□□□ -1.45
VPS41-212ENST00000482217 BCL2L13Q9BXK5 485 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms