RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 SRGAP3O43295 1099 aa10.26□□□□□ -0.77
SYNE1-225ENST00000481502 MMP10P09238 476 aa10.26□□□□□ -0.77
SYNE1-225ENST00000481502 POLD1P28340 1107 aa10.26□□□□□ -0.77
SYNE1-225ENST00000481502 DDR1Q08345 913 aa10.26□□□□□ -0.77
SYNE1-225ENST00000481502 IFIT5Q13325 482 aaKnown RBP10.26□□□□□ -0.77
SYNE1-225ENST00000481502 CCDC57Q2TAC2 916 aa10.26□□□□□ -0.77
SYNE1-225ENST00000481502 CRY2Q49AN0 593 aa10.26□□□□□ -0.77
SYNE1-225ENST00000481502 LMBR1LQ6UX01 489 aa10.26□□□□□ -0.77
SYNE1-225ENST00000481502 BICDL1Q6ZP65 573 aa10.26□□□□□ -0.77
SYNE1-225ENST00000481502 SMIM5Q71RC9 77 aa10.26□□□□□ -0.77
SYNE1-225ENST00000481502 TMC4Q7Z404 712 aa10.26□□□□□ -0.77
SYNE1-225ENST00000481502 ERC1Q8IUD2 1116 aa10.26□□□□□ -0.77
SYNE1-225ENST00000481502 SIRT2Q8IXJ6 389 aa10.26□□□□□ -0.77
SYNE1-225ENST00000481502 SMC5Q8IY18 1101 aa10.26□□□□□ -0.77
SYNE1-225ENST00000481502 NRXN2Q9P2S2 1712 aa10.26□□□□□ -0.77
SYNE1-225ENST00000481502 ANKRD18BA2A2Z9 1011 aa10.25□□□□□ -0.77
SYNE1-225ENST00000481502 CIAO1O76071 339 aa10.25□□□□□ -0.77
SYNE1-225ENST00000481502 HOXA10P31260 410 aaPredicted RBP10.25□□□□□ -0.77
SYNE1-225ENST00000481502 ERFEQ4G0M1 354 aa10.25□□□□□ -0.77
SYNE1-225ENST00000481502 CDC5LQ99459 802 aaKnown RBP10.25□□□□□ -0.77
SYNE1-225ENST00000481502 PNMA6EA0A0J9YXQ4 647 aa10.24□□□□□ -0.77
SYNE1-225ENST00000481502 SOCS7O14512 581 aa10.24□□□□□ -0.77
SYNE1-225ENST00000481502 RFX5P48382 616 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-225ENST00000481502 PTPN12Q05209 780 aaKnown RBP10.24□□□□□ -0.77
SYNE1-225ENST00000481502 R3HDM1Q15032 1099 aaKnown RBP10.24□□□□□ -0.77
SYNE1-225ENST00000481502 EPHA10Q5JZY3 1008 aa10.24□□□□□ -0.77
SYNE1-225ENST00000481502 CRAMP1Q96RY5 1269 aa10.24□□□□□ -0.77
SYNE1-225ENST00000481502 U3KPZ7 1027 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-225ENST00000481502 KDM2BQ8NHM5 1336 aa10.24□□□□□ -0.77
SYNE1-225ENST00000481502 BBOX1O75936 387 aa10.23□□□□□ -0.77
SYNE1-225ENST00000481502 HCLS1P14317 486 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-225ENST00000481502 ALDH1B1P30837 517 aa10.23□□□□□ -0.77
SYNE1-225ENST00000481502 IL15P40933 162 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-225ENST00000481502 TGFB2P61812 414 aa10.23□□□□□ -0.77
SYNE1-225ENST00000481502 G3BP1Q13283 466 aaKnown RBP eCLIP10.23□□□□□ -0.77
SYNE1-225ENST00000481502 GRIPAP1Q4V328 841 aa10.23□□□□□ -0.77
SYNE1-225ENST00000481502 DDX46Q7L014 1031 aaKnown RBP10.23□□□□□ -0.77
SYNE1-225ENST00000481502 NUTM1Q86Y26 1132 aa10.23□□□□□ -0.77
SYNE1-225ENST00000481502 KIF1BPQ96EK5 621 aa10.23□□□□□ -0.77
SYNE1-225ENST00000481502 C1orf115Q9H7X2 142 aa10.23□□□□□ -0.77
SYNE1-225ENST00000481502 GPR108Q9NPR9 543 aa10.23□□□□□ -0.77
SYNE1-225ENST00000481502 LAMB2P55268 1798 aa10.23□□□□□ -0.77
SYNE1-225ENST00000481502 CASZ1Q86V15 1759 aa10.23□□□□□ -0.77
SYNE1-225ENST00000481502 EYA2O00167 538 aa10.22□□□□□ -0.77
SYNE1-225ENST00000481502 SURF6O75683 361 aaKnown RBP10.22□□□□□ -0.77
SYNE1-225ENST00000481502 IGHDP01880 384 aa10.22□□□□□ -0.77
SYNE1-225ENST00000481502 NPR1P16066 1061 aa10.22□□□□□ -0.77
SYNE1-225ENST00000481502 ITGA6P23229 1130 aa10.22□□□□□ -0.77
SYNE1-225ENST00000481502 IGHMBP2P38935 993 aaKnown RBP10.22□□□□□ -0.77
SYNE1-225ENST00000481502 RBM17Q96I25 401 aaKnown RBP10.22□□□□□ -0.77
SYNE1-225ENST00000481502 SGIP1Q9BQI5 828 aa10.22□□□□□ -0.77
SYNE1-225ENST00000481502 SPON1Q9HCB6 807 aa10.22□□□□□ -0.77
SYNE1-225ENST00000481502 BSDC1Q9NW68 430 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-225ENST00000481502 ZBTB47Q9UFB7 747 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-225ENST00000481502 MYH3P11055 1940 aa10.22□□□□□ -0.77
SYNE1-225ENST00000481502 FAM177BA6PVY3 158 aa10.21□□□□□ -0.77
SYNE1-225ENST00000481502 ZBTB22O15209 634 aa10.21□□□□□ -0.77
SYNE1-225ENST00000481502 SRGNP10124 158 aa10.21□□□□□ -0.77
SYNE1-225ENST00000481502 RPS8P62241 208 aaKnown RBP10.21□□□□□ -0.77
SYNE1-225ENST00000481502 GRAPQ13588 217 aa10.21□□□□□ -0.77
SYNE1-225ENST00000481502 RTL5Q5HYW3 569 aaPredicted RBP10.21□□□□□ -0.77
SYNE1-225ENST00000481502 STYK1Q6J9G0 422 aa10.21□□□□□ -0.77
SYNE1-225ENST00000481502 ANKRD18AQ8IVF6 992 aa10.21□□□□□ -0.77
SYNE1-225ENST00000481502 SYNE4Q8N205 404 aa10.21□□□□□ -0.77
SYNE1-225ENST00000481502 GRAPLQ8TC17 118 aaPredicted RBP10.21□□□□□ -0.77
SYNE1-225ENST00000481502 JARID2Q92833 1246 aaPredicted RBP10.21□□□□□ -0.77
SYNE1-225ENST00000481502 MASTLQ96GX5 879 aa10.21□□□□□ -0.77
SYNE1-225ENST00000481502 MPHOSPH8Q99549 860 aa10.21□□□□□ -0.77
SYNE1-225ENST00000481502 LRRCC1Q9C099 1032 aa10.21□□□□□ -0.77
SYNE1-225ENST00000481502 GREM2Q9H772 168 aa10.21□□□□□ -0.77
SYNE1-225ENST00000481502 CD2APQ9Y5K6 639 aa10.21□□□□□ -0.77
SYNE1-225ENST00000481502 MROH5Q6ZUA9 1318 aa10.21□□□□□ -0.78
SYNE1-225ENST00000481502 ABCC12Q96J65 1359 aa10.21□□□□□ -0.78
SYNE1-225ENST00000481502 H0YIN7 160 aa10.2□□□□□ -0.78
SYNE1-225ENST00000481502 NUCB1Q02818 461 aa10.2□□□□□ -0.78
SYNE1-225ENST00000481502 FAM161AQ3B820 660 aa10.2□□□□□ -0.78
SYNE1-225ENST00000481502 TAF7LQ5H9L4 462 aa10.2□□□□□ -0.78
SYNE1-225ENST00000481502 CC2D2BQ6DHV5 1058 aa10.2□□□□□ -0.78
SYNE1-225ENST00000481502 LDHAL6AQ6ZMR3 332 aa10.2□□□□□ -0.78
SYNE1-225ENST00000481502 C10orf71Q711Q0 1435 aa10.2□□□□□ -0.78
SYNE1-225ENST00000481502 DDX60Q8IY21 1712 aaKnown RBP10.2□□□□□ -0.78
SYNE1-225ENST00000481502 RPGRQ92834 1020 aaKnown RBP10.2□□□□□ -0.78
SYNE1-225ENST00000481502 CNKSR1Q969H4 720 aa10.2□□□□□ -0.78
SYNE1-225ENST00000481502 AKAP2Q9Y2D5 859 aa10.2□□□□□ -0.78
SYNE1-225ENST00000481502 CHMP3Q9Y3E7 222 aa10.2□□□□□ -0.78
SYNE1-225ENST00000481502 RIPOR2Q9Y4F9 1068 aa10.2□□□□□ -0.78
SYNE1-225ENST00000481502 MSL1Q68DK7 614 aa10.19□□□□□ -0.78
SYNE1-225ENST00000481502 B4GALNT3Q6L9W6 998 aa10.19□□□□□ -0.78
SYNE1-225ENST00000481502 CLASRPQ8N2M8 674 aaKnown RBP10.19□□□□□ -0.78
SYNE1-225ENST00000481502 RHPN1Q8TCX5 695 aa10.19□□□□□ -0.78
SYNE1-225ENST00000481502 PDGFDQ9GZP0 370 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-225ENST00000481502 ANKRD2Q9GZV1 360 aa10.19□□□□□ -0.78
SYNE1-225ENST00000481502 CEP126Q9P2H0 1117 aa10.19□□□□□ -0.78
SYNE1-225ENST00000481502 ZBTB7AO95365 584 aa10.18□□□□□ -0.78
SYNE1-225ENST00000481502 PTGER2P43116 358 aa10.18□□□□□ -0.78
SYNE1-225ENST00000481502 OS9Q13438 667 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-225ENST00000481502 ATG9AQ7Z3C6 839 aa10.18□□□□□ -0.78
SYNE1-225ENST00000481502 CHD1LQ86WJ1 897 aa10.18□□□□□ -0.78
SYNE1-225ENST00000481502 SP8Q8IXZ3 490 aa10.18□□□□□ -0.78
SYNE1-225ENST00000481502 TMX4Q9H1E5 349 aaPredicted RBP10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms