RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 PLEKHF1Q96S99 279 aa8.78□□□□□ -1
USP48-208ENST00000479177 PRDM11Q9NQV5 511 aa8.78□□□□□ -1
USP48-208ENST00000479177 MAP10Q9P2G4 905 aa8.78□□□□□ -1
USP48-208ENST00000479177 COL5A2P05997 1499 aaPredicted RBP8.77□□□□□ -1
USP48-208ENST00000479177 NRAPQ86VF7 1730 aa8.77□□□□□ -1
USP48-208ENST00000479177 APAF1O14727 1248 aa8.77□□□□□ -1.01
USP48-208ENST00000479177 HMOX1P09601 288 aa8.77□□□□□ -1.01
USP48-208ENST00000479177 PRKAR2BP31323 418 aa8.77□□□□□ -1.01
USP48-208ENST00000479177 CHRNA2Q15822 529 aa8.77□□□□□ -1.01
USP48-208ENST00000479177 PPP2R2DQ66LE6 453 aa8.77□□□□□ -1.01
USP48-208ENST00000479177 ANKRD24Q8TF21 1146 aa8.77□□□□□ -1.01
USP48-208ENST00000479177 LTV1Q96GA3 475 aaPredicted RBP8.77□□□□□ -1.01
USP48-208ENST00000479177 NXF1Q9UBU9 619 aaKnown RBP8.77□□□□□ -1.01
USP48-208ENST00000479177 DLG5Q8TDM6 1919 aa8.76□□□□□ -1.01
USP48-208ENST00000479177 SENP3-EIF4A1A0A087X0R7 540 aa8.76□□□□□ -1.01
USP48-208ENST00000479177 CENPBP07199 599 aaPredicted RBP8.76□□□□□ -1.01
USP48-208ENST00000479177 BMP1P13497 986 aa8.76□□□□□ -1.01
USP48-208ENST00000479177 SULT6B1Q6IMI4 303 aa8.76□□□□□ -1.01
USP48-208ENST00000479177 TRIM46Q7Z4K8 759 aa8.76□□□□□ -1.01
USP48-208ENST00000479177 ZSCAN1Q8NBB4 408 aa8.76□□□□□ -1.01
USP48-208ENST00000479177 LRRN4Q8WUT4 740 aa8.76□□□□□ -1.01
USP48-208ENST00000479177 PNNQ9H307 717 aaKnown RBP8.76□□□□□ -1.01
USP48-208ENST00000479177 EVA1BQ9NVM1 165 aa8.76□□□□□ -1.01
USP48-208ENST00000479177 ZNF521Q96K83 1311 aa8.76□□□□□ -1.01
USP48-208ENST00000479177 MAPK8IP3Q9UPT6 1336 aa8.76□□□□□ -1.01
USP48-208ENST00000479177 NWD2Q9ULI1 1742 aa8.75□□□□□ -1.01
USP48-208ENST00000479177 AP1G2O75843 785 aa8.75□□□□□ -1.01
USP48-208ENST00000479177 F12P00748 615 aaPredicted RBP8.75□□□□□ -1.01
USP48-208ENST00000479177 CTHP32929 405 aa8.75□□□□□ -1.01
USP48-208ENST00000479177 RFC5P40937 340 aa8.75□□□□□ -1.01
USP48-208ENST00000479177 NBPF6Q5VWK0 638 aa8.75□□□□□ -1.01
USP48-208ENST00000479177 TCP11L2Q8N4U5 519 aa8.75□□□□□ -1.01
USP48-208ENST00000479177 NGEFQ8N5V2 710 aa8.75□□□□□ -1.01
USP48-208ENST00000479177 SLC16A10Q8TF71 515 aa8.75□□□□□ -1.01
USP48-208ENST00000479177 NBPF4Q96M43 638 aa8.75□□□□□ -1.01
USP48-208ENST00000479177 LRP6O75581 1613 aa8.75□□□□□ -1.01
USP48-208ENST00000479177 ALDH1A1P00352 501 aa8.74□□□□□ -1.01
USP48-208ENST00000479177 HSPA1LP34931 641 aa8.74□□□□□ -1.01
USP48-208ENST00000479177 KCNH2Q12809 1159 aa8.74□□□□□ -1.01
USP48-208ENST00000479177 USHBP1Q8N6Y0 703 aa8.74□□□□□ -1.01
USP48-208ENST00000479177 HELBQ8NG08 1087 aaPredicted RBP8.74□□□□□ -1.01
USP48-208ENST00000479177 PHACTR3Q96KR7 559 aa8.74□□□□□ -1.01
USP48-208ENST00000479177 UNC93B1Q9H1C4 597 aa8.74□□□□□ -1.01
USP48-208ENST00000479177 WNK3Q9BYP7 1800 aa8.74□□□□□ -1.01
USP48-208ENST00000479177 ERBB4Q15303 1308 aa8.74□□□□□ -1.01
USP48-208ENST00000479177 WDR17Q8IZU2 1322 aa8.74□□□□□ -1.01
USP48-208ENST00000479177 PKD1L3Q7Z443 1732 aa8.74□□□□□ -1.01
USP48-208ENST00000479177 PARP4Q9UKK3 1724 aaKnown RBP8.74□□□□□ -1.01
USP48-208ENST00000479177 PLEKHG2Q9H7P9 1386 aa8.73□□□□□ -1.01
USP48-208ENST00000479177 LRRC37A3O60309 1634 aa8.73□□□□□ -1.01
USP48-208ENST00000479177 FAM83GA6ND36 823 aa8.73□□□□□ -1.01
USP48-208ENST00000479177 TMPOP42166 694 aaKnown RBP8.73□□□□□ -1.01
USP48-208ENST00000479177 NFE2L2Q16236 605 aa8.73□□□□□ -1.01
USP48-208ENST00000479177 LINC01559Q495D7 138 aa8.73□□□□□ -1.01
USP48-208ENST00000479177 RRP7AQ9Y3A4 280 aaKnown RBP8.73□□□□□ -1.01
USP48-208ENST00000479177 MEGF6O75095 1541 aa8.73□□□□□ -1.01
USP48-208ENST00000479177 SLIT2O94813 1529 aa8.73□□□□□ -1.01
USP48-208ENST00000479177 SPATA31A6Q5VVP1 1343 aa8.73□□□□□ -1.01
USP48-208ENST00000479177 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.72□□□□□ -1.01
USP48-208ENST00000479177 NEFMP07197 916 aa8.72□□□□□ -1.01
USP48-208ENST00000479177 CSB-PGBD3P0DP91 1061 aa8.72□□□□□ -1.01
USP48-208ENST00000479177 CCDC27Q2M243 656 aa8.72□□□□□ -1.01
USP48-208ENST00000479177 NLRP2Q9NX02 1062 aa8.72□□□□□ -1.01
USP48-208ENST00000479177 CRB1P82279 1406 aa8.71□□□□□ -1.01
USP48-208ENST00000479177 FAM181BA6NEQ2 426 aa8.71□□□□□ -1.02
USP48-208ENST00000479177 ADAMTS2O95450 1211 aa8.71□□□□□ -1.02
USP48-208ENST00000479177 WNT7BP56706 349 aa8.71□□□□□ -1.02
USP48-208ENST00000479177 PDE3BQ13370 1112 aa8.71□□□□□ -1.02
USP48-208ENST00000479177 WWC1Q8IX03 1113 aa8.71□□□□□ -1.02
USP48-208ENST00000479177 EPS8L1Q8TE68 723 aa8.71□□□□□ -1.02
USP48-208ENST00000479177 BAP1Q92560 729 aa8.71□□□□□ -1.02
USP48-208ENST00000479177 IRF7Q92985 503 aa8.71□□□□□ -1.02
USP48-208ENST00000479177 HMX1Q9NP08 348 aaPredicted RBP8.71□□□□□ -1.02
USP48-208ENST00000479177 OVOS2A0A0G2JMS6 1433 aa8.71□□□□□ -1.02
USP48-208ENST00000479177 ADAMTS7Q9UKP4 1686 aa8.7□□□□□ -1.02
USP48-208ENST00000479177 SIAH2O43255 324 aa8.7□□□□□ -1.02
USP48-208ENST00000479177 RIPK4P57078 832 aa8.7□□□□□ -1.02
USP48-208ENST00000479177 SH3BP2P78314 561 aa8.7□□□□□ -1.02
USP48-208ENST00000479177 GAS2L2Q8NHY3 880 aa8.7□□□□□ -1.02
USP48-208ENST00000479177 BTG4Q9NY30 223 aa8.7□□□□□ -1.02
USP48-208ENST00000479177 SHANK3Q9BYB0 1731 aa8.7□□□□□ -1.02
USP48-208ENST00000479177 DISP2A7MBM2 1401 aa8.7□□□□□ -1.02
USP48-208ENST00000479177 VIRMAQ69YN4 1812 aaKnown RBP8.69□□□□□ -1.02
USP48-208ENST00000479177 H3BM21 787 aa8.69□□□□□ -1.02
USP48-208ENST00000479177 USP17L8P0C7I0 530 aa8.69□□□□□ -1.02
USP48-208ENST00000479177 LMOD3Q0VAK6 560 aa8.69□□□□□ -1.02
USP48-208ENST00000479177 MTHFSDQ2M296 383 aaKnown RBP8.69□□□□□ -1.02
USP48-208ENST00000479177 LARP1Q6PKG0 1096 aaKnown RBP8.69□□□□□ -1.02
USP48-208ENST00000479177 CARD10Q9BWT7 1032 aa8.69□□□□□ -1.02
USP48-208ENST00000479177 STRN4Q9NRL3 753 aa8.69□□□□□ -1.02
USP48-208ENST00000479177 MAP3K5Q99683 1374 aa8.69□□□□□ -1.02
USP48-208ENST00000479177 CAPN5O15484 640 aaPredicted RBP8.68□□□□□ -1.02
USP48-208ENST00000479177 NR6A1Q15406 480 aa8.68□□□□□ -1.02
USP48-208ENST00000479177 TOM1L2Q6ZVM7 507 aa8.68□□□□□ -1.02
USP48-208ENST00000479177 WDR63Q8IWG1 891 aa8.68□□□□□ -1.02
USP48-208ENST00000479177 RAPGEF4Q8WZA2 1011 aa8.68□□□□□ -1.02
USP48-208ENST00000479177 IL16Q14005 1332 aa8.68□□□□□ -1.02
USP48-208ENST00000479177 E9PSI1 815 aa8.67□□□□□ -1.02
USP48-208ENST00000479177 TATP17735 454 aaPredicted RBP8.67□□□□□ -1.02
USP48-208ENST00000479177 EVA1CP58658 441 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms