RNA–Protein interactions for RNA: ENST00000478658.1

USF3-202, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 8,461 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-202ENST00000478658 RIC8AQ9NPQ8 531 aa6.15□□□□□ -1.43
USF3-202ENST00000478658 ZNF277Q9NRM2 450 aaPredicted RBP6.15□□□□□ -1.43
USF3-202ENST00000478658 OLFML3Q9NRN5 406 aa6.15□□□□□ -1.43
USF3-202ENST00000478658 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.15□□□□□ -1.43
USF3-202ENST00000478658 BAG5Q9UL15 447 aa6.15□□□□□ -1.43
USF3-202ENST00000478658 APBB1O00213 710 aa6.15□□□□□ -1.43
USF3-202ENST00000478658 PHBP35232 272 aa6.15□□□□□ -1.43
USF3-202ENST00000478658 SPTY2D1Q68D10 685 aaPredicted RBP6.15□□□□□ -1.43
USF3-202ENST00000478658 LMNTD2Q8IXW0 634 aa6.15□□□□□ -1.43
USF3-202ENST00000478658 TSPY26PQ9H489 355 aa6.15□□□□□ -1.43
USF3-202ENST00000478658 PPP1R1BQ9UD71 204 aaPredicted RBP6.15□□□□□ -1.43
USF3-202ENST00000478658 FYB2Q5VWT5 728 aa6.15□□□□□ -1.43
USF3-202ENST00000478658 KCNH8Q96L42 1107 aa6.15□□□□□ -1.43
USF3-202ENST00000478658 ARID3AQ99856 593 aa6.15□□□□□ -1.43
USF3-202ENST00000478658 ARHGAP35Q9NRY4 1499 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 RASSF2P50749 326 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 LACTBP83111 547 aaPredicted RBP6.14□□□□□ -1.43
USF3-202ENST00000478658 TSNAXIP1Q2TAA8 658 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 CDAN1Q8IWY9 1227 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 CHMP6Q96FZ7 201 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 NUP85Q9BW27 656 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 HS1BP3Q53T59 392 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 ZNF622Q969S3 477 aaKnown RBP eCLIP6.14□□□□□ -1.43
USF3-202ENST00000478658 CTAGE1Q96RT6 745 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 IPO11Q9UI26 975 aaKnown RBP6.14□□□□□ -1.43
USF3-202ENST00000478658 CD2APQ9Y5K6 639 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 ST13P50502 369 aaKnown RBP6.14□□□□□ -1.43
USF3-202ENST00000478658 USP48Q86UV5 1035 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 TICAM2Q86XR7 235 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 ZNF354CQ86Y25 554 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 PSMA8Q8TAA3 256 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 FAM169AQ9Y6X4 670 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 ZCCHC6Q5VYS8 1495 aaKnown RBP6.14□□□□□ -1.43
USF3-202ENST00000478658 CASQ1P31415 396 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 SKIDA1Q1XH10 827 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 ZNF830Q96NB3 372 aaPredicted RBP6.14□□□□□ -1.43
USF3-202ENST00000478658 BICDL2A1A5D9 508 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 BMP15O95972 392 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 PNISRQ8TF01 805 aaKnown RBP6.14□□□□□ -1.43
USF3-202ENST00000478658 WDR60Q8WVS4 1066 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 RAPGEF4Q8WZA2 1011 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 NRBF2Q96F24 287 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 KIFC3Q9BVG8 833 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 ZNF212Q9UDV6 495 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 CCPG1Q9ULG6 757 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 CTAGE9A4FU28 777 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 YEATS4O95619 227 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 RFC1P35251 1148 aaPredicted RBP6.14□□□□□ -1.43
USF3-202ENST00000478658 CCDC40Q4G0X9 1142 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 TEX28O15482 410 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 BUB1BO60566 1050 aaPredicted RBP6.14□□□□□ -1.43
USF3-202ENST00000478658 MAK16Q9BXY0 300 aaKnown RBP6.14□□□□□ -1.43
USF3-202ENST00000478658 PALMDQ9NP74 551 aa6.14□□□□□ -1.43
USF3-202ENST00000478658 CA8P35219 290 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 FOSBP53539 338 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 NOLC1Q14978 699 aaKnown RBP eCLIP6.13□□□□□ -1.43
USF3-202ENST00000478658 LRRC37BQ96QE4 947 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 UBAC1Q9BSL1 405 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 ZHX3Q9H4I2 956 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 PARVBQ9HBI1 364 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 CHIC2Q9UKJ5 165 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 CCDC18Q5T9S5 1454 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 GPRASP1Q5JY77 1395 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 ZKSCAN2Q63HK3 967 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 E4F1Q66K89 784 aaPredicted RBP6.13□□□□□ -1.43
USF3-202ENST00000478658 MCTP2Q6DN12 878 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 MAATS1Q7Z4T9 603 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 RMND1Q9NWS8 449 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 EFCAB8A8MWE9 144 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 SERPINI2O75830 405 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 GSDMDP57764 484 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 CNGA4Q8IV77 575 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 TTC1Q99614 292 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 SIL1Q9H173 461 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 CTTNBP2NLQ9P2B4 639 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 CDV3Q9UKY7 258 aaKnown RBP6.13□□□□□ -1.43
USF3-202ENST00000478658 INAQ16352 499 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 TRIM42Q8IWZ5 723 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 MTRF1LQ9UGC7 380 aaKnown RBP6.13□□□□□ -1.43
USF3-202ENST00000478658 C4BPBP20851 252 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 CWC27Q6UX04 472 aaKnown RBP6.13□□□□□ -1.43
USF3-202ENST00000478658 HEATR3Q7Z4Q2 680 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 ZSCAN32Q9NX65 697 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 A0A1B0GUA9 196 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 PHACTR2O75167 634 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 SFPQP23246 707 aaKnown RBP eCLIP6.13□□□□□ -1.43
USF3-202ENST00000478658 DEUP1Q05D60 604 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 RGL3Q3MIN7 710 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 CALML4Q96GE6 196 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 TSGA10Q9BZW7 698 aa6.13□□□□□ -1.43
USF3-202ENST00000478658 BIN2Q9UBW5 565 aaPredicted RBP6.13□□□□□ -1.43
USF3-202ENST00000478658 RBM5P52756 815 aaKnown RBP eCLIP6.12□□□□□ -1.43
USF3-202ENST00000478658 ASPHQ12797 758 aa6.12□□□□□ -1.43
USF3-202ENST00000478658 CHMP2BQ9UQN3 213 aa6.12□□□□□ -1.43
USF3-202ENST00000478658 EIF3CLB5ME19 914 aaKnown RBP6.12□□□□□ -1.43
USF3-202ENST00000478658 TTC39AQ5SRH9 613 aa6.12□□□□□ -1.43
USF3-202ENST00000478658 CPLX4Q7Z7G2 160 aa6.12□□□□□ -1.43
USF3-202ENST00000478658 ZGPATQ8N5A5 531 aaKnown RBP6.12□□□□□ -1.43
USF3-202ENST00000478658 SPRYD3Q8NCJ5 442 aa6.12□□□□□ -1.43
USF3-202ENST00000478658 MORC4Q8TE76 937 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms